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Heatmap: Cluster_316 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
190.7 271.58 198.25 201.51 191.43 214.62 203.09 116.58 155.01 135.56 113.45 172.6 123.14 150.35 188.94 170.27
91.58 118.41 87.53 85.7 95.7 96.02 59.79 35.3 17.92 20.78 136.48 152.23 43.9 43.38 36.52 52.5
8.28 8.69 12.59 14.67 18.19 14.83 11.44 8.69 3.31 7.41 17.0 18.45 22.71 19.13 12.03 18.48
13.55 15.9 9.24 11.91 21.28 18.89 19.2 5.08 9.24 12.0 19.12 21.63 7.8 11.12 8.96 7.6
22.09 43.58 30.13 33.68 37.32 43.11 34.74 12.39 10.27 6.8 32.99 55.36 17.52 18.03 10.78 17.34
0.0 0.52 0.23 0.24 0.42 0.68 0.32 0.03 0.0 0.0 0.62 0.57 0.0 0.0 0.0 0.0
4.16 4.77 5.06 3.63 6.51 6.16 8.09 3.77 3.42 3.95 5.31 8.66 8.6 9.74 5.09 13.03
0.03 0.13 0.09 0.0 0.1 0.18 0.38 0.0 0.0 0.0 0.08 0.21 0.0 0.0 0.35 0.0
0.0 0.22 0.28 0.41 0.56 0.32 0.41 0.07 0.07 0.07 0.07 0.41 0.35 0.16 0.0 0.32
0.12 0.0 59.2 46.13 203.17 58.25 138.77 1.85 0.0 0.18 10.15 174.73 0.0 0.0 0.0 0.0
0.0 0.0 174.84 22.54 135.07 104.66 172.57 41.68 0.12 0.43 83.31 219.89 0.0 0.0 0.29 0.0
28.67 33.89 26.17 28.67 32.2 40.69 25.63 16.77 22.85 19.44 29.42 31.53 16.14 11.29 17.03 13.88
1.54 21.93 33.2 42.17 24.89 32.23 5.35 15.07 24.95 9.95 40.34 29.21 0.74 0.29 0.0 1.59
275.67 274.35 227.15 197.77 257.73 260.9 204.41 107.36 172.24 136.05 218.57 317.17 104.97 99.26 125.91 104.47
0.44 1.2 0.99 1.12 1.16 1.32 2.53 1.22 0.2 0.05 0.73 2.0 0.12 0.0 0.0 0.46
41.51 49.02 43.1 32.88 54.25 64.88 40.05 17.85 17.79 12.23 52.76 69.97 92.91 64.73 39.82 69.28
0.0 0.0 1.6 0.69 5.96 3.73 7.28 0.11 0.0 0.0 0.25 5.4 0.0 0.0 0.12 0.0
0.0 0.0 0.09 0.0 0.45 0.83 1.29 0.02 0.0 0.0 0.17 0.9 0.16 0.04 0.0 0.08
76.78 73.43 60.12 36.59 58.99 78.98 49.31 25.36 15.24 9.17 41.06 61.62 110.75 142.12 150.05 124.36
3.41 0.01 1.79 0.38 0.5 0.0 0.06 2.22 0.68 0.61 1.19 5.75 3.45 3.27 1.62 3.72
0.82 3.29 2.44 1.98 1.55 2.67 3.49 1.53 0.0 0.0 0.33 3.97 9.67 12.98 10.01 11.45
1.36 0.33 2.13 0.96 2.72 1.31 1.54 0.98 0.81 0.2 2.07 3.29 11.04 15.1 14.86 11.24
935.62 291.4 360.72 317.91 446.14 204.96 215.16 312.16 388.04 211.69 417.72 1208.9 430.9 366.78 647.52 724.43
867.61 283.67 694.12 622.88 732.76 636.56 683.36 475.77 411.62 331.25 739.12 1255.3 368.89 335.71 409.29 519.55
23.53 33.75 20.88 16.48 22.83 31.4 12.61 8.12 10.56 13.41 15.85 29.29 28.05 38.83 33.28 23.31
168.25 174.35 172.05 111.38 175.88 165.21 200.08 86.7 93.85 80.01 190.82 274.41 107.18 140.43 144.29 115.7
252.55 219.12 191.17 133.22 201.36 219.52 212.11 114.09 128.87 104.82 212.01 266.17 216.27 189.1 191.89 180.77
11.55 24.31 23.79 20.68 38.07 24.54 18.3 8.72 9.08 10.54 33.32 35.68 35.93 29.54 31.76 46.06
12.33 6.42 8.21 11.97 10.92 6.49 0.63 0.64 0.77 0.65 9.84 29.41 8.07 10.01 3.36 6.84
460.81 168.86 347.04 341.95 496.55 342.19 295.54 133.33 268.13 195.57 568.87 696.9 112.91 114.66 84.35 119.91
564.47 461.26 268.41 280.86 349.7 338.43 364.53 195.21 173.53 135.19 519.88 598.54 189.34 211.24 154.75 231.82
57.52 43.05 28.51 32.23 30.52 35.65 42.23 18.84 30.7 33.31 50.8 41.1 21.88 18.42 13.17 36.9
110.15 129.71 118.17 140.19 113.56 132.57 130.66 64.42 74.49 49.23 92.0 117.13 68.22 69.93 69.47 61.82
77.02 232.03 103.68 170.6 125.39 110.4 101.54 54.52 81.83 38.79 43.85 100.19 191.0 185.6 288.79 229.27
1584.74 622.7 999.46 866.11 930.78 410.19 1038.28 256.1 113.09 202.73 784.93 3268.91 622.61 786.89 1560.75 1727.06
74.72 158.03 79.74 129.65 78.93 245.33 200.05 66.08 65.86 10.89 174.03 208.73 33.3 16.73 4.5 29.75
1314.22 1082.75 1319.07 948.58 1270.05 1049.91 991.66 391.81 714.88 654.12 1189.94 1599.36 337.32 394.83 547.91 444.36
44.62 99.63 74.32 42.97 109.68 96.47 86.16 59.33 52.99 39.86 82.38 117.17 42.37 37.5 43.3 39.2
0.16 7.24 3.87 2.32 9.6 5.83 6.2 4.52 0.08 0.0 1.83 7.17 0.0 0.0 0.0 0.0
169.45 249.9 292.64 364.79 191.59 256.36 188.31 106.2 65.85 76.49 420.91 344.47 24.7 32.95 65.08 64.16
68.89 92.5 42.26 54.84 52.41 64.22 58.2 24.97 29.42 24.81 49.6 41.97 54.59 42.61 55.95 43.96
42.66 94.03 53.35 82.11 98.93 97.38 46.29 33.84 36.13 38.4 61.79 83.84 38.2 30.08 30.03 26.34
32.58 31.18 20.73 16.96 25.29 31.57 32.5 13.32 13.96 13.74 24.03 24.76 49.65 44.48 44.32 50.96
22.57 15.34 47.86 40.87 37.3 4.87 3.46 3.21 0.0 0.33 50.82 68.29 379.39 34.91 120.28 111.27
23.71 14.8 25.25 14.27 33.1 14.17 10.94 1.05 3.86 1.42 22.51 21.41 0.0 0.11 0.0 0.56
33.55 54.45 29.04 36.54 33.08 38.48 27.91 15.31 20.73 15.62 32.07 33.34 35.97 26.88 31.57 47.66
96.27 102.35 103.51 122.23 85.61 113.61 87.46 68.63 26.29 11.8 146.71 126.69 73.48 55.15 39.93 71.98
1.3 3.91 1.36 1.01 4.19 3.56 1.92 0.82 1.05 0.36 5.04 6.06 2.12 1.39 1.66 3.11
25.72 34.8 29.39 36.44 24.75 28.47 26.43 16.24 26.58 15.86 24.27 27.08 14.13 11.31 9.5 19.46
9.52 4.67 3.47 1.84 2.17 2.95 4.71 2.47 2.89 3.29 7.28 15.85 10.72 10.4 10.28 10.2
0.0 0.0 0.33 0.11 0.53 0.24 0.0 0.1 0.0 0.0 0.4 0.52 0.0 0.0 0.0 0.22
332.13 850.03 1067.5 1041.03 955.68 904.0 586.82 599.37 659.33 619.49 1105.86 1148.03 134.61 105.57 160.26 251.57
10.3 0.12 68.67 20.37 55.77 41.56 65.43 3.96 2.73 1.53 30.33 98.71 0.17 0.7 0.99 0.31
19.31 23.55 17.97 19.07 24.89 25.26 12.84 10.11 3.03 2.31 13.57 23.52 18.61 20.49 16.82 18.73
0.84 5.51 8.67 6.6 8.49 8.36 4.76 1.27 0.15 0.15 11.49 7.89 5.76 1.35 0.0 3.96
301.38 330.09 471.96 369.0 511.95 479.99 356.74 208.9 249.98 208.53 390.75 552.23 213.35 227.29 224.08 225.53
463.08 376.3 285.32 319.98 334.2 241.8 254.17 69.04 43.94 74.85 419.16 763.68 120.34 114.15 137.65 141.44
12.0 8.93 5.5 6.84 7.86 8.31 7.26 3.25 5.81 6.64 10.26 12.18 8.69 9.94 7.76 10.79
0.48 14.54 2.32 3.84 15.72 7.82 1.77 0.26 2.58 2.16 6.3 5.27 0.36 0.61 1.28 0.6
43.35 42.85 27.48 21.15 34.47 45.97 38.26 23.47 14.71 17.32 37.49 39.92 49.54 48.27 55.3 61.58
12.12 19.36 18.08 20.56 17.79 23.21 28.44 11.03 19.2 12.2 23.7 25.61 17.28 15.76 9.63 18.11
15.69 88.0 95.19 132.72 125.26 113.97 70.72 34.91 49.03 31.6 113.73 156.3 42.84 50.87 49.03 32.6
1.81 23.1 15.66 16.59 21.59 22.25 14.52 1.26 0.35 1.7 20.4 19.71 2.5 1.86 1.16 2.02
188.16 430.07 228.75 340.97 273.71 374.79 281.21 93.29 99.67 125.26 245.5 431.2 90.24 72.81 61.87 137.19

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)