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Heatmap: Cluster_105 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.96 -2.61 0.09 -0.64 0.26 0.39 2.18 -1.27 -2.2 -2.73 0.56 1.53 - - - -
-4.67 -2.0 0.82 0.83 0.45 0.4 1.5 0.1 -2.51 -1.81 2.0 0.02 -4.75 -6.65 -7.17 -4.37
-5.27 -7.72 1.06 1.14 1.81 1.9 1.18 -2.78 -4.63 -1.34 -0.23 -0.71 -6.28 -5.79 -4.31 -4.08
0.45 -0.36 -0.25 -0.12 -0.4 0.23 0.64 0.16 0.35 0.35 0.63 -0.18 -0.33 -0.63 -1.56 -0.44
0.48 -1.2 -0.77 0.04 -0.46 0.25 0.01 -0.76 0.26 0.9 0.54 -0.42 0.1 -0.26 -0.97 0.44
-6.98 0.01 0.44 0.43 0.69 1.22 1.11 1.94 -5.99 - -0.2 0.55 - - - -
0.46 -0.94 -0.41 0.14 -0.2 -0.21 1.13 -0.07 -0.12 0.13 1.42 0.34 -1.28 -1.56 -1.94 -1.32
0.15 -0.75 -1.46 -1.27 -0.99 -0.77 -0.23 -0.52 -0.39 -0.26 0.13 -0.02 1.18 0.94 0.65 0.54
-2.75 -0.74 -2.2 -2.08 -0.8 0.04 -0.1 0.56 -1.77 -2.45 -1.25 -1.3 1.48 1.81 -0.6 1.34
0.72 -0.92 -0.26 0.19 -0.41 -0.36 0.49 -0.03 0.05 0.3 0.52 0.12 -0.23 -0.4 -0.69 -0.12
0.79 0.01 -1.07 -0.65 -0.38 -0.18 0.63 -0.69 0.65 0.55 0.82 0.55 -1.1 -1.27 -1.07 -0.52
-3.29 - -4.09 - - -5.72 -6.35 -3.37 - - 3.24 2.49 -3.76 - - -0.72
-0.36 0.4 0.64 0.63 1.41 1.0 2.0 -3.04 -3.29 -4.08 -1.14 -0.03 -3.02 -3.81 -5.74 -2.38
- - 0.74 0.38 1.29 2.21 0.44 0.86 -7.29 -7.23 0.16 0.64 - - -3.38 -
-0.17 -3.1 -2.34 -2.08 -1.0 -1.03 0.59 -0.13 - -9.02 -4.46 -2.72 1.59 1.56 0.78 1.72
0.46 -1.01 -0.21 0.29 -0.29 -0.11 0.35 -0.18 0.45 0.42 0.62 0.09 -0.37 -0.72 -1.01 -0.08
-1.05 0.01 - - -2.72 -2.31 -0.67 -0.33 - -2.64 -0.92 -1.49 2.64 1.21 -0.97 1.39
-0.18 -0.25 -0.49 -0.22 -0.29 -0.07 1.41 0.26 -0.57 -0.52 0.36 -0.49 -0.11 0.15 -0.79 0.11
-0.15 -2.27 0.47 0.59 1.98 1.61 -0.3 -1.6 -2.63 - -1.54 -5.23 -0.32 0.39 -0.34 -1.22
0.68 -0.51 -1.06 -0.84 -0.16 -0.37 0.7 -0.35 0.2 0.44 0.91 0.83 -0.7 -0.76 -1.12 -0.39
0.21 -0.65 -1.02 -0.89 -0.69 -0.5 -0.42 -0.69 -0.1 0.29 0.37 0.12 0.79 0.38 0.04 0.91
0.0 -0.82 -0.8 -0.38 -0.2 -0.53 0.05 -0.12 -0.11 -0.3 -0.06 -0.26 0.89 0.57 0.15 0.67
0.15 -1.18 -1.61 -1.06 -1.02 -0.43 0.11 -0.14 0.02 0.21 0.73 -0.1 0.72 0.26 0.01 0.85
0.89 0.46 -1.04 -0.52 -0.57 -0.16 0.38 -0.31 0.08 0.4 0.69 0.33 -0.4 -1.04 -1.28 0.01
-1.03 -0.76 1.48 0.76 1.96 1.62 -0.94 -1.42 -0.59 -1.44 -3.11 -5.42 -1.04 -2.97 -1.43 -1.28
1.18 0.39 -0.87 -0.36 -0.2 0.18 -0.61 -1.19 0.11 0.44 0.97 0.67 -0.93 -1.1 -1.75 -0.48
0.58 -0.27 -0.88 -1.44 -0.51 -0.11 -0.06 -0.2 -0.53 -0.29 0.83 -0.15 0.62 0.08 -0.02 0.62
0.7 -0.53 -0.68 -0.41 -0.18 -0.3 -0.03 -0.63 0.29 0.66 0.53 -0.11 -0.07 -0.46 -0.36 0.43
0.69 -0.7 -0.5 -0.6 -0.48 0.01 -0.1 -1.06 -0.55 -0.25 0.46 0.15 0.5 0.43 0.22 0.41
0.47 -1.29 -1.31 -0.76 0.01 0.04 0.79 -0.06 0.02 0.39 1.04 0.84 -0.62 -0.71 -1.38 -0.6
0.24 -0.55 -0.09 0.14 -0.13 -0.04 0.04 -0.19 0.13 0.47 0.59 0.25 -0.25 -0.3 -0.78 -0.17
1.66 -1.7 -0.26 -0.45 -0.68 -0.56 0.18 0.15 -0.48 -1.42 1.08 1.11 -0.78 -1.04 -0.89 -1.16
0.87 -1.01 -0.45 -0.24 -0.11 0.09 0.67 -0.43 -0.23 0.32 0.92 0.18 -0.19 -0.88 -1.48 -0.2
-1.35 -6.25 -3.6 -6.85 -7.07 -4.89 -4.54 -3.82 -5.0 -3.95 -2.1 -1.39 2.52 1.9 -0.61 2.17
0.21 -1.32 -0.73 -0.33 -0.74 -0.32 -0.02 -0.37 -0.34 0.02 0.03 -1.02 1.03 0.66 0.16 0.88
- - - - 0.99 - 1.78 0.21 - - - 1.43 - - 2.75 -
-1.33 -0.88 0.08 0.83 0.64 1.15 0.4 -1.74 -0.44 0.18 1.31 0.67 -1.8 -2.53 -2.85 -1.82
0.36 -0.49 -0.34 -0.17 -0.2 0.08 0.15 -0.17 0.26 0.48 0.61 -0.37 0.01 -0.4 -0.82 0.23
2.03 - -0.14 0.14 0.89 -0.17 - - - - 0.44 2.54 - - - -
0.69 -0.17 -0.3 -0.83 -0.7 -0.55 0.33 -0.19 -1.01 0.08 0.24 0.31 0.17 0.1 0.04 0.57
1.62 -1.15 -0.57 -0.04 0.07 0.71 -0.45 -1.33 -1.64 -1.0 0.33 -0.14 0.4 -0.11 -0.62 0.18
-0.84 -1.1 -0.06 0.32 0.64 0.0 1.02 -0.97 -1.41 -1.03 1.13 0.24 0.21 -0.55 -0.93 0.08
0.23 -0.43 -0.03 -0.17 0.44 -0.26 0.95 1.02 -0.95 -1.26 1.0 0.68 -1.52 -1.54 -1.64 -0.93
- -1.51 2.54 1.42 2.02 1.64 - - - - - - - - - -
-0.39 -1.6 -0.11 0.35 -0.48 0.22 0.19 -0.21 -0.23 -0.45 0.49 -0.5 0.44 -0.31 0.67 0.45
-1.16 -1.2 -2.83 -2.49 -1.13 -0.53 1.19 -1.0 -0.22 -2.16 0.18 0.22 1.07 0.13 1.24 0.95
0.49 -0.41 -0.03 0.33 -0.41 -0.31 0.11 0.05 0.27 0.45 0.33 -0.35 0.0 -0.53 -1.07 0.2
0.79 -0.36 -1.14 -0.84 -0.31 -1.0 0.3 -0.06 -0.48 -0.43 0.1 -0.95 0.95 0.28 0.14 0.76
0.24 -0.88 -0.77 -0.37 -0.88 -0.43 0.02 -0.28 -0.3 0.01 0.11 -0.77 0.74 0.38 0.31 1.08
0.41 -0.33 -1.25 -1.03 -0.53 -0.02 0.07 0.05 0.02 0.61 0.44 -0.07 0.48 -0.01 -0.49 0.32
- - - - - - 4.0 - - - - - - - - -
0.33 -0.43 -0.28 0.26 0.26 0.05 0.74 0.03 -0.57 -0.51 0.74 -0.1 -0.12 -0.56 -0.71 -0.18
1.65 -0.59 -1.3 -0.67 -0.83 -0.39 0.24 -1.08 -0.01 0.76 0.94 0.04 -0.21 -0.9 -1.36 -0.36
-0.65 -0.66 0.93 0.09 1.76 0.93 0.38 -1.38 -0.04 -0.55 -0.99 -3.06 -1.6 -1.45 0.56 -1.68
-0.28 -0.48 0.29 0.58 1.36 0.72 1.03 -0.24 -1.48 -1.66 -1.42 0.39 -0.42 -1.42 -1.4 -0.33
0.88 -0.04 -1.0 -0.96 -0.96 -0.64 0.64 -0.32 -0.75 -0.17 0.89 0.68 0.14 -0.16 -1.13 0.34
0.28 -0.5 -0.55 -0.29 0.12 0.18 0.01 -0.92 0.44 0.65 0.21 0.14 0.06 -0.62 -0.84 0.46
1.24 -1.08 -1.66 -1.84 -0.7 -1.16 0.36 -0.28 0.23 0.14 0.63 -0.03 0.59 0.2 - 0.97
-0.17 - -1.09 -2.34 -1.24 -0.07 -0.18 0.16 - -1.43 0.19 -0.09 1.81 0.59 0.79 0.91
0.49 -0.56 -0.9 -0.73 -0.5 -0.35 0.77 -0.25 0.73 1.02 0.74 0.43 -1.0 -1.21 -1.67 -0.35
0.76 -2.51 -1.34 -0.14 -0.75 -2.62 -1.88 0.18 -1.75 -1.89 -0.29 -0.09 1.79 0.32 0.06 1.38
1.63 0.17 -0.81 -0.73 -0.62 -0.69 -0.14 -0.73 0.22 0.21 0.96 0.95 -1.53 -1.35 -1.6 -0.83
- - - - - - -1.39 - - - - - - 1.1 3.75 -
2.37 -0.01 -2.37 -1.28 -0.28 0.64 -3.2 -4.64 -1.43 -0.58 1.23 0.92 -2.78 -1.88 -0.35 -2.1
0.19 -0.44 -1.43 -1.36 -0.42 -0.83 0.76 -0.29 -0.38 -0.16 0.99 0.21 0.67 -0.28 -0.76 0.79
1.88 -1.35 -0.07 -0.39 -0.36 -0.66 0.01 -0.46 -1.7 -2.61 0.44 1.11 -0.42 -0.35 -0.46 -0.29
- - - - - - 1.31 - - - - - - - - 3.76
-2.53 0.26 -3.14 - -2.03 -1.15 0.7 0.29 - -2.46 - - 1.92 1.24 - 2.21
0.53 -0.1 -0.47 -0.08 -0.37 -0.07 0.19 -0.44 0.05 0.4 0.45 -0.28 0.39 -0.22 -1.02 0.2
0.05 -0.58 -0.93 -0.33 -0.35 0.38 0.58 -0.31 0.76 0.5 0.97 0.22 -0.6 -0.79 -1.92 -0.19
0.23 -3.96 -0.21 0.01 0.6 0.23 0.31 -1.29 0.01 0.99 1.55 1.21 -3.58 -3.78 -4.44 -3.18
0.86 -0.95 -1.64 -1.87 -1.17 -0.5 -0.31 -1.33 -1.62 -0.97 0.44 0.11 1.09 0.98 0.29 1.09
0.89 -1.32 -0.68 -0.47 -0.36 -0.46 0.81 -0.43 -0.3 0.01 1.09 0.7 -0.42 -0.61 -0.85 -0.21
0.05 -1.94 -0.77 -0.8 -1.46 -1.05 0.13 -0.04 -0.46 -0.69 -0.33 -0.1 1.1 0.97 0.79 0.79
-0.28 -2.87 -1.32 -1.61 -0.97 -0.96 0.62 -0.54 -1.26 -1.11 0.46 -0.22 1.09 0.95 0.87 1.04
0.58 -2.03 -0.74 -0.64 0.06 0.08 -0.28 -0.44 0.6 0.8 0.26 0.26 0.25 -0.41 -1.0 0.33
0.66 -0.49 -1.94 -3.42 -1.16 -0.61 0.55 -0.14 -1.34 -1.31 -0.62 -2.6 1.75 1.15 - 1.42
0.72 -1.89 -3.89 -2.09 -4.92 -0.79 -0.91 -0.7 -1.29 -0.91 0.86 0.91 0.95 1.17 0.79 0.57
- -7.95 1.59 1.91 1.69 1.79 1.1 -7.69 - - -2.76 -2.38 - - -4.46 -
0.1 -0.53 -0.45 0.0 0.33 0.27 -0.07 0.05 0.86 0.8 0.58 0.14 -0.85 -1.31 -2.54 -0.37
0.81 -0.44 -0.54 -0.5 -0.44 -0.43 0.38 -0.65 -0.39 0.13 0.61 0.35 0.04 -0.02 -0.05 0.08
0.01 -0.5 -1.15 -0.69 -0.79 -0.66 1.14 -0.3 0.54 0.66 1.09 0.04 -0.36 -0.75 -1.79 0.18
2.25 1.17 -0.91 0.93 -3.37 - - - - -2.85 0.51 1.67 - -2.68 -0.61 -0.12
0.19 -1.16 -0.32 0.11 -0.1 0.18 -0.29 -0.56 0.27 0.33 0.64 -0.06 0.08 -0.14 -0.72 0.49
0.63 -0.94 -1.55 -1.6 -1.58 -0.95 0.4 -0.47 -0.17 -0.28 0.22 0.36 0.71 0.68 0.53 0.62
-0.16 -0.38 -1.4 -1.39 -0.19 -0.86 0.99 -0.25 0.58 0.01 -0.52 -1.12 0.19 0.44 1.09 0.04
0.72 -0.39 -0.26 0.2 -0.19 0.05 0.03 -0.45 0.27 0.34 0.61 0.19 -0.31 -0.64 -0.75 -0.38
0.2 -1.0 -0.39 -0.06 -0.41 0.21 0.17 0.01 -0.11 -0.0 0.76 0.28 0.58 -0.57 -0.98 0.11
1.04 -0.86 -2.4 -1.47 -2.68 -0.55 -2.08 -3.87 0.24 1.43 1.24 -1.67 0.97 0.28 -1.05 0.57
-0.21 -1.32 -1.65 -0.76 -0.26 -0.4 0.5 -0.64 0.43 -0.28 0.74 0.01 0.29 -0.45 0.43 1.01
1.22 0.96 -1.68 -0.47 -2.54 -1.3 -2.61 -5.91 0.56 0.54 0.79 -0.9 -0.02 0.02 -1.37 1.23
-0.29 -1.27 - - - 0.68 - - 2.29 -0.65 2.47 -0.72 - - 0.6 -
0.47 -0.82 -0.25 0.14 -0.03 -0.15 0.23 -0.04 0.35 0.13 0.46 -0.04 0.09 -0.6 -0.9 0.15
-3.42 -2.88 0.57 0.22 0.45 -0.15 -2.38 -1.58 - - - -3.92 1.84 1.09 0.09 1.81
0.81 0.44 -0.72 -0.5 0.13 -0.44 0.9 -0.63 -0.01 0.54 0.96 0.27 -1.25 -1.47 -2.24 -0.66
-0.19 -0.98 -0.89 -0.78 -0.81 -0.51 1.18 -0.33 -0.76 -1.4 -0.7 -1.36 1.11 1.0 0.68 0.5
0.15 -1.13 -0.08 0.16 0.18 0.29 0.16 -0.12 0.13 0.25 0.71 -0.02 0.1 -0.77 -1.15 -0.04
0.99 -1.45 -1.15 -0.69 -0.71 -0.93 1.26 -0.11 0.38 0.13 0.13 0.37 -0.02 -0.45 -1.24 0.26
1.21 -0.7 -0.64 -0.39 -0.67 -0.62 0.29 -0.55 -0.18 0.17 0.17 -0.22 -0.21 0.15 0.1 0.52
1.35 -0.4 -1.35 -0.76 -0.69 -0.04 -0.51 -0.68 -2.95 -3.17 0.96 0.93 0.57 0.37 -1.07 0.53
0.03 0.04 -1.73 -1.47 -0.99 -0.64 -0.79 -1.26 -0.14 0.02 0.23 -0.87 1.48 0.82 -0.36 1.11
-0.39 -2.81 0.74 0.32 0.28 0.6 1.18 -0.54 0.59 0.33 0.02 -2.87 -0.37 -1.18 -0.1 -1.2
- - - - - - -4.41 - - - - - 1.22 1.54 3.42 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.