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Heatmap: Cluster_133 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
2.33 -2.52 0.01 0.24 0.74 0.87 0.39 -0.73 -0.41 -0.19 -0.41 -0.34 - - -6.13 -
1.2 -0.16 -0.69 -1.08 0.44 0.75 -0.36 -1.45 -0.22 0.37 0.18 -0.08 0.08 -0.37 -1.47 0.18
1.83 -3.01 -0.2 -0.32 0.51 0.31 -0.11 -0.07 -0.02 -0.46 0.03 -0.4 -0.3 -0.6 -1.0 -0.64
0.98 -1.92 -1.71 -1.48 0.14 0.4 -0.87 -1.72 -0.55 -1.18 -0.14 -1.63 1.72 0.05 -0.31 1.22
1.71 -0.24 -1.02 -0.38 -0.21 -0.29 -0.75 -0.42 -3.46 -3.22 -1.39 -1.98 0.41 1.38 0.85 0.03
3.12 - -1.31 -1.7 1.69 -1.69 1.53 -5.46 - - -3.44 -4.55 - - - -
0.52 0.35 -0.12 0.3 0.01 0.2 -0.29 -1.71 -0.88 -0.67 -0.14 -0.24 0.46 -0.04 -0.09 0.72
2.78 1.44 1.0 - 1.13 - -0.67 - - - 0.67 - - - - -
2.22 -3.77 0.88 -0.56 0.45 -0.17 -2.99 1.11 -1.89 -0.55 -1.38 -0.0 -0.23 -2.22 -3.95 -0.47
2.34 1.12 -0.29 1.05 1.42 0.68 - -2.95 - - - - - 0.53 - -
1.06 -0.85 -0.49 -0.64 -0.14 -0.11 -0.65 -0.53 -0.69 0.18 -0.22 -0.41 0.54 0.4 0.46 0.42
2.6 -1.02 0.59 0.42 0.45 0.64 -0.74 0.39 -1.16 -1.39 -2.31 -1.4 -2.88 -3.52 -5.14 -3.58
1.89 -0.59 -1.37 -1.68 -0.92 -0.06 -0.75 -1.79 -2.63 -2.38 -2.02 -1.13 0.81 1.06 0.79 0.95
1.68 0.1 -2.64 -3.56 -0.11 -0.09 -0.93 -0.75 0.14 -1.08 -1.48 -1.34 1.02 0.43 -0.47 1.05
3.17 - -2.98 0.35 0.48 1.38 -3.65 -1.39 -0.41 - -1.32 - - - - -
1.33 -0.23 -0.49 -1.44 0.42 0.57 -0.35 -1.32 -0.21 -0.28 -0.08 -0.04 -0.41 0.03 -0.33 0.44
0.96 0.31 0.16 0.31 0.87 -0.06 0.06 -1.07 -1.04 -1.23 -0.43 -0.77 -0.15 -0.05 -0.97 0.62
0.59 -0.08 -0.94 -1.22 -0.1 -0.01 -0.41 -1.43 -0.83 -0.53 0.19 0.39 0.69 0.43 0.79 0.21
1.58 0.46 -0.96 -1.31 -0.33 -0.73 -1.36 -1.27 -0.9 0.28 -0.81 -3.0 0.89 0.03 0.66 0.7
1.56 -0.61 -0.36 -1.44 -0.05 0.33 -1.06 -0.91 -1.66 -1.88 -0.85 -0.95 0.94 1.02 -0.79 0.87
2.15 0.4 - - 0.1 -0.06 1.3 -1.69 - - - - 1.89 0.79 - -
0.7 -0.2 -1.19 -1.28 -0.18 -1.22 -3.01 -0.52 -7.84 -6.27 -3.07 -2.37 1.64 1.57 0.11 1.59
0.59 -0.3 -1.16 -1.92 -0.28 -0.15 -0.22 -0.95 -0.39 -0.73 -0.25 0.01 0.9 0.68 0.82 0.51
1.21 -0.28 -1.99 -2.46 0.35 0.05 -0.82 -0.45 -2.28 -2.58 -0.81 -2.54 1.15 1.15 0.26 1.06
0.9 -0.81 -0.67 -0.62 0.01 0.37 -1.01 -0.79 -1.76 0.18 -0.2 -0.31 0.78 0.44 -0.26 0.92
1.38 0.15 -1.91 -2.72 0.19 0.18 -1.52 -0.7 -0.9 -1.29 -1.13 0.09 0.13 0.26 0.84 1.06
1.4 0.75 -0.51 -0.27 0.37 0.36 -0.4 -1.47 -0.33 -0.65 0.37 0.74 -0.89 -1.25 -1.05 -0.73
0.52 -0.56 -0.68 -1.17 0.06 0.3 -0.53 -1.43 -0.39 0.24 0.32 -0.43 0.84 0.66 0.12 0.13
0.39 -0.99 -1.36 -1.19 0.27 -0.3 -0.57 -1.0 -1.95 -1.92 -0.74 -1.39 1.41 0.57 0.84 1.44
-0.55 - - - -2.18 - - -2.97 - - - - 2.41 0.09 1.58 2.48
2.56 - 0.34 - 0.79 1.31 -0.74 -3.32 - - - - - 1.96 - -
1.66 1.04 -1.01 0.33 0.13 0.77 - -0.96 - - - - - -1.19 0.88 1.78
0.76 -1.16 -1.0 -1.06 -0.25 -0.62 -0.89 -1.54 -1.82 -1.59 -1.14 -1.37 1.7 0.6 0.09 1.69
1.38 -0.78 -1.01 -1.87 -0.53 -0.39 -1.06 -2.23 -3.31 -1.8 -0.97 -0.47 1.12 1.08 0.77 1.19
2.93 -2.48 - - 1.65 1.86 - -6.58 - - - - -0.39 -1.67 - -1.4
0.89 -1.12 -0.58 -0.73 0.48 0.24 -0.92 -1.47 -0.99 -0.08 0.37 -0.79 0.86 0.76 -0.39 0.45
0.51 -2.2 -0.71 -0.63 -1.32 -1.23 -4.49 -3.38 - - -3.03 -3.14 1.33 2.42 1.31 0.62
0.79 -0.78 -0.51 -2.18 0.23 0.34 -0.53 -1.37 -0.87 -0.07 0.42 0.15 1.25 0.2 0.06 -0.46
1.65 0.22 0.52 0.17 0.54 0.18 -1.8 -1.17 -5.79 -5.89 -2.97 -0.87 0.57 -0.15 -0.43 0.98
1.58 - - - 1.34 1.24 - -1.51 - 1.33 - 0.28 - 0.45 - 1.42
2.18 0.18 0.1 -0.2 0.32 1.08 -0.47 -1.1 -3.54 -4.03 0.28 -0.6 -0.71 -0.92 -1.75 -1.28
1.52 -1.09 0.22 -0.86 0.45 0.25 0.06 -0.48 -1.84 -2.17 -0.88 -0.09 0.28 0.26 0.17 0.15
1.31 -3.06 -0.33 -0.28 1.33 0.75 -0.35 -0.82 -2.66 -4.66 -0.82 -0.05 0.48 0.06 -0.46 0.43
0.91 -0.48 -0.09 -0.25 0.28 -0.19 -0.04 -0.73 -0.62 -0.31 -0.21 -0.3 0.47 0.3 -0.28 0.46
1.2 0.33 -0.43 -0.99 -0.14 0.26 -0.08 -0.43 0.25 0.65 0.05 -0.36 -0.29 -0.9 -0.96 -0.06
1.53 0.28 -0.19 -1.01 0.54 -0.02 -0.59 -1.46 -2.32 -2.4 -0.19 -0.58 0.43 0.5 0.25 0.25
0.55 -0.41 -0.49 -0.21 0.18 0.2 -0.04 -0.25 -0.05 -0.14 0.11 0.07 0.52 -0.3 -0.5 0.2
0.9 -0.37 -0.41 -0.78 0.39 0.7 -0.34 -0.46 -0.11 0.34 0.06 -0.9 0.12 -0.26 -0.31 0.1
2.62 -2.27 0.49 0.47 -0.52 0.55 -2.4 -2.8 - -2.69 -2.65 - - -1.5 1.57 -0.53
3.52 - - - - 2.18 - - - - - - - - - -
0.78 -0.45 -1.4 -1.65 0.09 0.38 -0.11 -0.13 -1.05 -1.7 -0.81 -0.43 0.77 0.7 0.42 0.9
-0.66 -2.99 -5.48 -5.15 -2.54 -1.61 -1.53 -2.42 - - - -4.93 2.24 1.78 1.0 1.98

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.