Heatmap: Cluster_171 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
2.59 1.5 -0.81 -2.27 - -2.05 - -3.16 - - - - 0.6 0.99 -0.75 0.96
-0.24 1.06 - - - - -0.17 -3.82 -3.99 - -2.27 -1.66 - -2.91 3.41 -0.35
-0.94 -1.25 - -0.82 - - -4.21 -5.69 -2.27 -2.81 - - 1.09 1.11 2.87 1.29
- - - - - - -1.03 - - - - - - 1.49 3.23 1.72
- 0.48 - - - -1.84 - -3.45 - - -1.14 - - 3.54 1.09 -
-2.04 -3.17 - 1.62 - - -3.1 -1.39 0.66 0.63 -2.62 -3.17 -1.25 -0.54 2.63 0.43
0.28 0.78 - - - - 1.12 -4.23 - - -2.81 -1.91 -0.04 - 3.05 0.25
-0.19 - - - - - - - - - - -0.41 - - 3.85 -
-1.36 -1.15 - - - - -2.55 -2.11 -1.24 -0.87 -2.15 -2.26 -1.97 -0.74 3.59 -1.09
3.85 -0.79 - - - - - - - - - - - -0.94 - -0.97
-3.21 3.23 -0.85 - 0.02 - - - -1.87 - - - - -0.62 1.45 0.35
0.85 0.67 -2.48 -2.04 -0.92 -1.66 0.52 0.44 0.35 0.01 -1.23 -1.67 0.93 0.04 0.22 0.52
-0.4 0.47 - - - - - - - - - - - - 3.79 -
-2.42 - 0.69 2.5 -1.5 -1.67 - -2.29 -1.07 - - - 1.28 - 2.25 -
0.17 -0.42 0.72 -0.02 0.47 0.3 -0.08 -2.29 -2.08 -4.02 -2.98 -2.87 0.49 1.03 1.61 -0.63
-2.53 -3.36 - 1.41 - - -4.52 -0.57 0.93 1.69 -2.04 - - -1.22 2.59 -0.84
-0.67 -0.5 - 2.59 - - -2.7 -1.52 -1.34 0.16 -1.62 - 0.04 -0.06 1.75 -0.09
1.62 - - - - - - - - - - - - - 3.69 -
-1.16 -2.14 - -1.4 - - -4.23 -0.57 0.5 -0.07 -4.84 -3.36 -0.38 1.06 2.78 0.98
-2.01 -2.96 - -2.67 - - -2.76 -2.33 -1.21 -1.65 -4.27 -3.52 -0.53 0.96 3.32 0.71
- 0.17 - - - - - - - - - - - 1.27 3.34 1.24
-1.77 -0.82 - -2.02 - - 0.27 0.3 -0.0 0.19 -1.64 -3.34 - 0.75 2.92 -0.6
3.44 - - - - - 2.37 - - - - - - - - -
-3.91 -5.06 - - - - -5.31 -4.16 -2.75 -4.28 -4.25 -4.94 0.96 1.34 3.13 1.22
- -2.58 - - - - - - - -2.42 - - - -0.01 3.87 -
-0.23 -1.95 - -1.37 - - -1.37 -0.19 0.99 0.75 -4.12 -2.9 -2.29 -0.8 3.01 -0.83
-0.52 -0.36 - - - - -0.21 -2.49 -4.25 -5.78 -1.94 -1.6 -0.49 0.93 3.15 0.38
-0.63 -1.71 - - - - -0.9 -1.63 -1.23 -1.91 -1.46 -3.57 -1.23 -1.0 3.5 -0.35
- 4.0 - - - - - - - - - - - - - -
-1.77 -2.43 - - - - -3.62 -2.93 -3.17 -2.11 -4.08 -4.19 0.6 0.79 3.28 0.92
0.82 1.51 - - - - 1.55 -1.51 -2.75 -3.45 -2.15 -0.75 -1.65 -1.84 2.45 -0.02
- - - - - - - - - 4.0 - - - - - -
-2.57 - - - - - -2.13 -3.19 0.22 -0.74 - - 1.5 - 3.06 1.37
0.43 1.92 - - - -3.46 -0.64 -1.51 - -2.78 -2.74 -2.85 1.07 -1.03 2.46 0.36
-1.24 -0.71 - - - - -0.0 -3.63 -5.04 -3.99 -4.9 -3.03 -0.73 -1.09 3.47 0.56
-2.25 2.66 0.6 -0.31 0.87 0.88 -4.18 -2.36 -2.95 -1.3 -2.44 -2.96 -2.18 -2.26 0.79 -2.3
-1.5 1.18 0.09 0.14 0.9 1.21 - - - - - - -2.42 -4.52 2.46 0.36
4.0 - - - - - - - - - - - - - - -
0.5 1.39 - - - - 1.12 -1.28 -3.59 -3.54 -3.49 -0.28 -1.33 - 2.73 0.35
-2.76 - - - - - - -1.15 -0.72 0.91 - - - 0.82 3.48 -
-2.61 -1.95 - - - - -1.39 -7.33 -3.98 -2.93 -3.88 -1.4 0.28 1.4 2.9 1.68
-4.38 -4.95 - - - - -3.67 -3.51 -3.21 -2.5 -4.38 -3.81 1.07 1.96 2.47 1.93
-4.93 -4.09 - - - - - -4.34 -2.65 -5.19 -4.11 - 1.07 1.94 2.96 0.94
2.36 1.89 0.25 -1.32 -1.52 -1.24 -2.05 -7.55 - - - -3.35 0.26 0.41 -0.01 -0.11
-2.78 - - - - - - -6.18 - - - -2.91 - -1.1 3.84 -0.13
-0.05 - - - - - - - - - - - - - 3.91 -
-4.78 - - -5.47 - - -5.62 -4.83 -3.47 -4.64 -6.16 -4.28 0.67 2.41 2.15 2.12
-2.83 1.02 1.22 1.39 1.35 1.72 1.02 -2.25 - - -2.41 -2.52 - - -1.18 -
0.13 1.6 - - - - 0.22 -2.5 - -3.47 - -2.73 -1.62 0.36 2.89 0.35
-2.67 -2.95 - - - - -2.83 -5.03 -4.54 - - - 0.47 1.86 3.12 0.83
0.84 - - - - - - - - - - - - - - 3.83
3.49 -0.25 -2.69 -3.36 -2.24 0.85 -1.66 -2.38 -1.13 -4.07 -2.03 -4.14 - - -1.77 -
-2.19 - - 1.75 - - -0.24 -1.07 -1.08 -0.44 -1.97 - - -1.91 2.96 0.64
-5.25 -5.08 - - - - -3.98 -3.19 -3.4 -4.36 -4.85 -4.98 1.2 1.5 2.76 1.87
0.32 1.09 - - - - -0.2 -2.47 -3.87 -3.81 -3.77 -2.56 - -1.16 3.3 -0.2
0.79 2.29 - - - - 1.43 -1.74 -6.09 -4.44 -3.41 -2.29 -3.76 -3.85 2.31 -0.07
0.81 1.72 - - - - -0.38 -3.64 - - - -2.88 -2.19 -1.12 2.83 1.14
-1.13 -0.06 - - - - -1.6 -4.58 -5.18 - - -4.19 -1.24 -0.75 3.64 -0.63
-2.79 - - - - - -3.57 - - - - - -0.99 - 3.89 -1.12
-2.82 -1.71 - - - - -3.16 -4.35 -4.39 - - - 0.91 2.32 2.47 1.55

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.