Heatmap: Cluster_56 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	stage A1 (Dhaka et al., 2020)	stage A3 (Dhaka et al., 2020)	M-81E strain-control (Sun et al., 2020)	M-81E strain-salt (Sun et al., 2020)	Roma strain-control (Sun et al., 2020)	Roma strain-salt (Sun et al., 2020)	root (Murray et al., 2022)	shoot system (Murray et al., 2022)	119 days old-Postflowering drought stress (Varoquaux et al., 2019)	84 days old-control (Varoquaux et al., 2019)	84 days old-Preflowering drought stress (Varoquaux et al., 2019)	35 days old-control (Varoquaux et al., 2019)	Dev Stage 3 (Leiboff et al., 2019)	Dev Stage 2 (Leiboff et al., 2019)	Dev Stage 1 (Leiboff et al., 2019)	Dev Stage 4 (Leiboff et al., 2019)
Sobic.001G085450.1	-	-	-0.45	3.37	-0.36	1.55	-	-	-	-	0.28	-	-	-	-	-
Sobic.001G101000.1	0.47	-	0.68	0.67	1.45	0.95	-0.13	0.24	-	-0.52	-	-	1.99	-	-	-
Sobic.001G140101.1	-4.44	-4.26	-	-3.8	-2.53	-4.16	-	-	-	-	-	-	1.6	2.73	1.67	1.48
Sobic.001G145050.1	-2.53	-2.55	-1.74	-1.65	-0.09	-0.42	-1.31	-0.88	-2.11	-2.64	-3.01	-3.7	2.27	1.7	0.54	1.2
Sobic.001G195400.1	-	-	-	-	-0.68	-	-	-	-	-	-	-	1.11	-0.99	3.67	-
Sobic.001G243400.1	-	-	1.24	2.38	2.17	-	-1.02	-3.01	-	-	-	1.73	-	-	-	-
Sobic.001G427600.1	-0.37	-5.67	-0.8	-4.08	-0.53	-2.68	-0.32	0.08	-	-	-2.75	-0.03	1.14	1.9	0.96	1.52
Sobic.002G112850.1	-	-	0.17	1.5	1.89	-	-	-	-	-	-	-	-	-	3.06	-
Sobic.002G194700.1	-1.29	0.56	0.85	0.74	1.55	-0.17	-1.77	-2.4	-2.31	-1.79	-0.2	0.87	0.07	-0.64	-1.06	0.0
Sobic.002G211400.1	0.14	-	-	3.27	2.39	-	-	-	-	-	-	-	-	-	-	-
Sobic.002G285375.1	-	-	-	-	3.22	-	-	2.74	-	-	-	-	-	-	-	-
Sobic.002G358450.1	-	-	-	0.13	-1.11	-	-	-	-	-	-	-	1.68	1.16	1.65	2.55
Sobic.002G360400.1	-0.81	-	-	1.41	1.72	-	0.39	-1.03	-	-	-	-	-	-	2.94	-
Sobic.003G038300.1	-	-	-	-3.52	-1.76	-	-	-	-	-	-	-3.25	2.61	2.02	1.81	0.9
Sobic.003G076001.1	-	-	0.55	2.98	2.57	-0.48	-	-	-	-	-	-	-	-	-	-
Sobic.003G128850.1	1.2	1.44	-	1.03	1.33	0.67	1.03	-	-	-	-	-	-	-	-	1.49
Sobic.003G159850.1	-0.47	-	0.3	-	3.02	-	-	2.57	-	-	-	-	-	-	-	-
Sobic.003G160400.1	-	-	-	0.93	0.73	0.56	-	-	-	-	-	-	2.51	-	-	2.39
Sobic.003G203833.1	-	-	-	-0.81	-2.08	-	-	-	-	-	-	-	1.57	2.24	2.25	1.46
Sobic.003G427550.1	-	-	-0.72	-0.39	1.28	-0.76	0.19	0.43	-	0.33	-0.64	-1.74	2.55	0.1	-	-
Sobic.003G436750.1	-	-	-	3.45	1.76	0.75	-	-	-	-	-	-	-	-	-	-
Sobic.004G043301.1	-	-	-	3.28	0.97	0.92	0.71	-0.35	-	-	-	-	-	-	-	-
Sobic.004G078900.1	0.85	-1.05	-0.06	-0.73	0.74	-1.36	-0.16	0.05	-2.55	-1.8	-0.4	0.65	0.67	-0.38	0.77	0.4
Sobic.004G150650.1	-	-	-	-	3.63	1.87	-	-	-	-	-	-	-	-	-	-
Sobic.004G217300.1	-	-	0.53	1.89	3.44	-	-	-	-	-	-	-	-	-	-	-
Sobic.004G247650.1	-	-	1.29	-	3.22	0.26	1.61	-	-	-	-	-	-	-	-	-
Sobic.004G299700.1	1.12	1.45	-	1.64	-0.36	0.64	1.59	-0.62	-	-	-	-	-0.58	-	0.39	-
Sobic.004G309100.1	-	-	-	2.82	3.16	-	-	-	-	-	-	-	-	-	-	-
Sobic.004G333900.1	-6.98	-3.73	-0.0	1.47	2.81	-2.79	-	-	-4.07	-1.78	-0.8	1.78	-4.3	-	-1.32	-2.42
Sobic.005G038100.1	-	-	-0.06	1.08	2.92	0.23	1.79	-	-	-	-1.37	-1.48	-	-	-	-
Sobic.005G077300.1	-	-	-	2.17	2.97	1.73	-	-1.44	-	-	-	-	-	-	-	-
Sobic.005G109101.1	-	-	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-
Sobic.005G109201.1	-	-	0.68	2.02	2.14	-	-	-	-	-	-	-	-	-	2.57	-
Sobic.005G119250.1	1.11	0.04	-	1.92	2.3	1.55	-	-	-	-	0.25	-	-	-	-	-
Sobic.005G120466.1	-	-	-	-	2.82	-	-	2.02	-	-	-	2.29	-	-	-	-
Sobic.005G126401.1	-4.37	-	-	-	-4.01	-	-	-5.47	-	-	-	-4.56	1.42	2.65	2.21	1.18
Sobic.005G139750.1	-	-	-	1.68	2.17	-	-	-	-	-	0.46	1.35	-	2.13	-	-
Sobic.005G205550.1	-	-	-	-1.0	0.79	-	-	-	-	-	-	-	1.57	-0.53	3.13	0.45
Sobic.005G221300.1	-	-	-	2.86	-	-	-1.23	-	-	-	-	1.69	-	-	2.35	-
Sobic.006G077800.1	-	-	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-
Sobic.006G140050.1	-	-	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-
Sobic.006G147101.1	0.33	-	-	1.9	2.6	-	-	-	-	-	-	-	-	2.3	-	-
Sobic.006G153550.1	-	-	-1.16	-0.8	-0.06	-	-	-1.31	-	-	-	-	2.32	1.22	1.71	1.61
Sobic.006G181150.1	-	-	-3.67	-	-1.74	-	-	-	-	-4.02	-	-	3.12	2.0	1.02	-0.3
Sobic.007G034550.1	-	-	0.89	1.31	3.42	-0.09	-	-	-	-	-	-	-	-	-	-
Sobic.007G094300.1	-	-	-1.4	2.26	2.3	-0.43	0.73	-	-	-	0.3	1.19	-	-	-	-
Sobic.007G143250.1	-	-	-2.91	-3.49	-1.25	-2.88	-3.37	-3.2	-3.61	-3.57	-	-2.01	2.66	0.98	0.73	2.22
Sobic.007G219000.1	0.02	-1.73	-0.68	0.04	0.84	-0.94	0.48	-0.94	-0.81	-2.25	-0.53	0.02	0.56	0.13	-0.13	1.5
Sobic.008G023200.1	-	-	-	-	3.51	-	-	-	-	-	-	-	-	2.2	-	-
Sobic.008G031800.1	-	-	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-
Sobic.008G157700.1	-	-	-	-	2.8	2.64	-0.32	1.01	-	-	-	-	-	-	-	-
Sobic.008G161500.1	-	-	-	1.87	2.35	-0.82	-	-0.85	1.37	0.84	-0.12	-0.23	-	-	-	-
Sobic.009G028700.2	1.05	-	0.26	2.59	2.39	-	0.58	-	-	-	-	-	-	-	-	-
Sobic.009G072600.1	-	1.62	-	2.87	1.5	-0.66	-1.3	-0.48	-	0.0	-	-	-	-	-	-
Sobic.009G080150.1	-	-	-	1.18	2.09	-	-	-	-	-	-	-	-	-	3.24	-
Sobic.009G216100.2	1.48	-4.76	-0.12	0.68	1.69	-0.65	1.55	-0.58	-1.99	-3.54	-1.12	0.15	-1.48	-2.23	-3.54	-0.67
Sobic.010G003600.1	-	-0.27	0.8	1.15	2.83	-	0.45	-	-	-	0.5	0.4	-	-	-	-
Sobic.010G031400.1	-	-	-1.21	2.95	1.71	-	-	-	-	-	-1.49	1.4	-	-	0.66	-
Sobic.010G166201.1	-	-	-	1.19	1.98	-	-	0.99	-	-	0.54	0.43	1.76	0.67	-	-
Sobic.010G245601.1	-0.68	-0.45	-	-	0.91	0.19	-	-	-	-	-	-	-	1.64	3.09	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.