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Heatmap: Cluster_50 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
3.59 - - - - - - - - - - - - - 1.98 -
3.61 -3.63 -5.07 -5.88 -4.41 -6.05 -6.16 -3.87 -6.91 -8.31 -7.46 -5.92 -0.41 -1.28 -1.02 0.85
3.38 -5.84 -3.86 -3.39 -4.95 -3.63 -3.07 -1.68 -2.44 -4.15 -3.32 -3.54 0.77 0.06 -0.92 0.24
3.46 - - - - - - - - - - - - - 2.32 -
3.83 -2.0 -2.76 -2.27 -3.13 -2.64 -5.2 -5.25 -2.82 -2.05 -6.18 -5.29 -3.94 -4.03 -2.96 -2.74
3.75 - - - - -2.53 - -1.15 -0.92 0.46 - - - - - -
2.78 - -3.64 -5.63 -3.82 -5.99 -5.63 -4.8 - -5.33 - - 1.48 1.34 0.39 1.16
4.0 -9.09 - -11.6 - - - -5.99 - - - - - - -9.06 -10.16
3.7 -3.07 - -3.78 -2.98 -1.82 -3.78 -4.76 -2.54 - - - - -0.29 0.36 -
3.96 - -4.52 - -3.39 -2.56 - - - - - - - -3.71 - -3.73
3.98 - - -2.43 - -4.12 - - - - - -5.52 - - - -
3.97 -4.44 - -5.59 - -4.37 -6.59 -5.98 - - - -5.36 - - -3.03 -
2.91 -5.42 - - - - -8.38 -3.25 - - - -6.15 1.32 1.29 -0.65 1.47
0.53 - - - - - - - - - - - - - 3.86 -
3.99 - - - - - - -3.44 - - - - - - - -
3.35 -2.64 -3.43 -4.32 -5.11 -0.79 -2.37 -4.39 - - - - 0.84 -0.27 -4.94 1.01
2.78 - - - - - -2.75 - -1.45 - - - - 0.73 2.8 -
4.0 - - - - - - - - - - - - - - -
3.98 - - - - - - - - - -2.34 - - - - -
3.45 - - - - - - - - - - - - - 2.34 -
3.69 -3.92 -3.37 -2.04 - - -1.24 0.12 -2.8 -2.74 - - -1.46 -2.56 - -1.58
3.96 -5.59 - - - -5.12 -3.75 -5.72 -4.52 - -4.42 -4.53 - -2.73 - -
4.0 - - - - - - - - - - - - - - -
3.93 -3.98 -2.0 -3.78 -4.58 - - - - - - - - - -1.82 -3.92
3.99 -3.16 - - - - - - - - - - - - - -
3.95 -1.65 - - -5.3 - -7.32 - - - - - -7.33 -5.25 -3.03 -
4.0 - - - - - - - - - - - - - - -
3.99 - - - - - - - - - - - - -2.82 - -
3.51 - - - - - - - - - - - 0.69 - - 1.57
3.43 - - - - -1.93 -1.98 -0.74 - - -3.22 - 0.02 -1.49 -1.0 1.07
0.3 -5.6 - -6.7 -6.9 - -5.7 -6.88 - - - -6.46 1.63 2.15 2.39 0.93
4.0 - - - - - - - - - - - - - - -
2.84 -2.0 -1.34 -1.36 -1.44 -1.63 -1.73 -3.18 -2.52 -2.47 -1.33 -1.7 0.62 -0.33 0.5 0.91
3.96 -2.75 - - -3.53 - -4.32 - - -2.98 - - - - - -
3.63 -1.33 -6.06 -6.31 -4.93 -4.35 -5.15 -4.18 -1.38 -2.09 -4.64 - -2.03 -1.4 0.24 -0.86
3.9 -2.0 -7.55 -9.21 -9.42 -8.58 -10.22 -12.21 -3.76 -4.45 - - -1.64 -2.21 -3.66 -3.3
3.91 - - - - - - - - - - - - - -0.6 -1.7
-2.4 - - - - - - -7.02 - - - - 1.93 2.92 1.27 1.02
3.91 -1.03 -5.22 - - - -3.47 -3.56 -6.22 - - - -2.89 -5.99 -3.92 -
2.97 -2.13 -2.16 - -1.44 -1.19 - - - - - - 1.92 0.98 - 0.22
3.96 -1.34 - - - - - -6.02 - - - - - - - -
3.94 -4.92 -5.75 -5.42 - -5.2 -1.25 -4.3 - - - - - - -3.86 -
4.0 - - - - - - - - - - - - - - -
3.57 -2.22 -4.15 -3.5 -3.7 -2.86 -2.73 -2.42 -1.06 -1.94 -5.49 -3.27 -0.65 -0.33 -1.26 -1.04
3.94 - -5.35 - - -4.38 - -4.42 -3.77 -3.13 - - - - -1.46 -
3.93 -0.95 - - - - - -7.44 - - - - -1.87 - - -
4.0 -7.78 - - - - - - - - - - - - - -
1.8 -5.57 - - - - -4.51 -3.63 - - - - 1.59 1.06 0.04 2.64
4.0 - - - - - - - - - - - - - - -
3.93 - -1.44 -3.43 -2.64 -2.8 - - - - - - - - - -
3.95 - -3.71 -6.18 -4.8 -2.74 -4.86 - - - - -5.95 - - -2.04 -
3.59 - - - - - - -4.59 - - - - - - 1.98 -
4.0 - - - - - - - - - - - - - - -
4.0 - - - - - - - - - - - - - - -
3.99 - - - - - - - - -3.06 - - - - - -
3.94 -8.37 -4.43 -3.64 -3.4 -3.45 -3.51 -3.95 -6.71 -5.78 -3.98 -4.9 -6.73 -8.08 -6.91 -5.37
3.24 -8.37 -4.53 -5.64 -6.33 -5.49 -7.45 - -8.2 - -8.1 - -0.48 -0.36 2.24 -2.04
3.89 -3.5 - - -2.74 -0.08 - - - - - - - - - -
4.0 - - - - - - - - - - - -5.94 - - -
3.78 -2.22 - - - -0.5 - -2.12 -1.71 -1.65 -2.61 - - -1.46 - -
3.93 -3.54 -7.5 -7.16 -5.06 -4.0 -5.37 -5.13 -7.9 - -6.22 -4.75 -5.59 -3.99 -1.3 -6.72
3.99 - -8.37 - -9.24 - -6.59 - - - - -7.22 -5.88 -7.56 -6.49 -6.59
4.0 - - - - - - - - - - - - - - -
-1.87 - - - - - - - - - - - 1.34 2.56 2.31 1.21
3.63 -3.95 -6.35 -6.01 -5.22 - -5.02 -2.17 -5.76 -4.12 -3.67 -4.77 -0.12 -0.37 -0.3 -0.98
3.55 - -3.91 - - - -3.93 -5.41 - - - - 0.41 0.89 -0.62 -1.72
4.0 - - - - - - - - - - - -9.66 -9.18 -8.69 -
4.0 - - - - - - - - - - - - - - -
3.97 - - - - - - - - - - - - - -1.43 -
4.0 - - - - - - - - - - - - - - -
3.92 -1.77 -2.46 -2.71 -4.65 -4.07 - -3.12 - - - - - - - -
4.0 - - - - - - - - - - - - - - -
3.99 -2.78 - - - - - - - - - - - - - -
3.0 - - - - - - - - - - - 2.45 - - 1.33
3.52 - - - - - - - - -0.34 - - - - 1.91 -
0.33 - - - - - - - - - - - 3.88 - - -
4.0 - - - - - - - - - - - - - - -
3.77 -4.07 -3.05 -5.42 -1.44 -3.47 -1.74 -4.8 -2.28 -0.46 -2.77 -3.61 -3.83 - -3.85 -3.37
2.57 -3.82 -5.92 -5.91 -7.1 -6.28 -5.52 -2.9 -5.35 -4.22 -4.06 -4.29 1.4 0.81 0.69 1.84
3.99 - -5.93 -4.79 - -7.97 - - - - - - - - - -
3.94 - - - - - - -0.59 - - - - - - - -
2.26 -3.48 - - - -5.14 -3.96 -5.43 - - -5.43 - 1.81 1.72 0.49 1.47
3.38 -2.29 -6.01 -4.68 -3.87 -1.72 -3.68 -0.87 -1.35 -2.21 -5.34 -4.45 -0.39 0.43 0.34 -1.89
3.96 - - -3.68 - -1.73 - - - - - - - -3.2 - -
3.88 -6.04 -6.5 - -3.79 -5.54 - -8.15 -5.93 - - - - -3.69 0.05 -
4.0 - - - - - - - - - - - - - - -
3.99 - - - - - - -4.92 - - - - - -3.03 - -
3.67 - -3.82 - - - - - - - - - -0.9 -0.32 0.72 -2.11
3.72 -5.36 - - -6.62 -5.55 -5.42 -4.51 - -5.1 -5.32 -4.58 -0.31 -1.04 -3.13 0.21
3.78 -5.23 - - -8.81 - - -8.61 -6.76 -6.28 -4.16 -5.18 -1.33 -0.95 -0.73 -0.78
3.8 -4.0 -8.27 -7.19 -6.27 -6.07 -6.36 -7.67 -2.88 -3.29 -6.16 -7.69 -1.57 -1.56 -0.84 -1.13
3.96 -5.31 - -6.54 -6.75 -5.1 -7.55 -3.86 - - - - -2.65 -4.75 - -4.09
3.65 -0.75 - - - - - -1.85 - - - -2.06 - - 1.24 -
3.86 - - - - - -0.42 -4.02 - -0.67 - - - - - -
3.79 -0.09 - - - - - - - 0.34 - - - - - -
2.89 - - - - - - - - - - - 1.24 1.01 1.93 -1.34
3.98 - -3.49 -5.48 -3.68 - - - - - - - -3.9 - - -
2.56 - - - - - - - - - - -2.29 0.6 1.82 1.57 0.91

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.