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Heatmap: Cluster_276 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
2.04 -1.66 -1.66 -0.74 - 0.63 -2.33 - 2.09 0.57 0.82 0.5 - - - -
1.48 -3.0 -1.14 - -2.62 -3.77 -2.15 -1.64 0.88 0.92 - - 1.34 0.56 1.34 0.67
2.81 -2.68 -3.75 -5.73 -2.62 -3.29 -5.16 -0.82 2.01 1.87 -3.38 - - -5.26 - -3.29
0.71 0.33 -0.43 -0.44 -0.16 0.06 -0.06 -0.29 0.05 0.16 -0.65 -1.03 0.2 0.09 0.14 0.39
0.91 -5.94 -2.4 -3.04 -1.88 -2.44 -5.23 -3.92 -0.35 -1.17 -6.36 -6.47 2.62 1.7 -0.13 0.76
1.63 0.79 -3.89 -4.37 -3.33 -2.8 -4.04 0.56 1.14 0.9 -2.42 -3.15 0.49 0.42 -0.41 0.48
2.99 - - - - - - - 3.01 - - - - - - -
0.89 -0.12 -1.33 -2.24 -0.68 -0.34 -0.56 -1.29 0.0 0.3 -0.62 -1.11 0.8 0.76 0.69 0.78
1.17 -0.82 -1.1 -1.18 -0.85 -0.15 -0.13 -0.31 0.71 -0.35 0.42 -0.03 -0.16 0.25 0.02 0.34
-0.12 -2.98 -0.89 -2.28 -1.18 -1.5 -1.34 -1.98 0.46 -0.54 -0.45 -1.37 1.62 0.78 0.76 1.64
1.13 -0.04 -0.76 -1.09 -0.89 -0.39 -0.58 -0.3 0.96 1.04 -0.5 -0.15 -0.58 -0.43 -0.09 0.05
1.01 -0.98 -0.61 -0.35 0.91 0.08 -1.43 -5.99 1.9 0.94 0.59 0.15 - -2.11 - -2.14
1.83 1.04 - - - - - - 3.38 - - - - - - -
0.74 -1.58 -0.16 -0.16 -5.13 -3.65 -4.49 0.49 0.93 1.55 -0.19 -2.76 0.63 -0.2 -1.18 0.95
1.68 -0.09 -1.34 -1.32 -1.17 -1.69 -6.6 -1.25 0.2 0.54 -1.29 -0.4 0.78 -0.17 -0.05 1.34
2.44 -0.38 -2.76 - -0.82 -0.63 -1.35 -0.6 0.97 0.56 -0.78 -1.62 - -1.36 0.71 0.03
2.03 -0.25 -1.07 - -0.35 -0.69 - - 2.01 0.89 -0.4 -3.09 -0.15 -1.25 -0.76 -0.86
0.57 -1.08 -0.98 -1.14 -1.29 -0.73 -0.13 -0.27 0.31 -0.19 -0.01 -0.15 0.92 0.72 0.65 0.26
0.74 -1.17 -1.97 -2.49 -3.53 -1.4 -1.77 0.09 0.79 0.02 -1.57 -3.26 1.46 0.97 0.38 1.28
1.59 -0.4 -2.89 -1.7 -0.94 -1.26 -1.17 0.84 1.6 1.02 -1.44 -1.47 -1.23 -0.61 -0.26 -0.12
2.2 - - - - 0.99 - -1.64 3.18 - - - - - - -
1.12 -0.17 -6.19 -4.21 -3.49 -3.17 -3.71 -2.94 0.96 -0.04 -3.65 -5.05 1.65 0.94 -0.23 1.81
1.25 -1.48 -1.94 -5.31 -1.52 -3.09 0.11 -0.04 0.64 -1.3 -1.16 -4.07 1.48 0.95 0.24 1.05
1.02 -1.4 -1.55 -1.36 -1.83 0.11 -1.63 0.53 1.31 0.49 0.07 -0.15 0.13 -0.04 -0.58 0.22
2.53 -0.65 -1.91 -0.51 -0.24 -1.16 -0.48 -1.21 2.07 0.58 -3.71 -2.23 -2.45 - - -
-4.16 - - - - - - - -3.37 - - - 2.01 -3.13 - 3.55
0.51 -0.19 -0.82 -0.75 -0.33 -0.38 -0.2 -0.2 0.09 -0.04 -0.48 -0.66 0.64 -0.31 0.66 0.93
0.99 0.16 -2.51 -2.12 -2.43 -1.82 -2.44 0.08 0.88 0.38 -1.48 -1.78 0.93 0.68 -0.21 1.39
2.52 -0.3 - - - -0.81 - - 1.0 1.34 -2.08 -1.19 0.12 -0.85 0.09 -0.01
0.07 -0.9 -3.51 -4.76 -6.29 -6.45 -1.8 -0.52 0.06 -0.83 -1.89 -3.15 1.89 1.47 1.03 1.48
2.31 - 1.48 - - - - - 3.05 - - - - - - -
1.61 - -0.07 -0.74 - - - 0.28 1.5 1.15 -0.4 - - -0.25 1.82 -
-0.12 -0.8 -0.71 -0.89 -0.79 -0.67 -0.25 -0.5 -0.23 -0.46 -0.31 -0.38 1.05 1.1 0.48 0.88
1.49 - - 0.78 -0.46 - - -0.68 2.37 - - - - - 2.3 -
1.32 0.54 -1.83 -2.21 -1.23 -2.13 0.29 0.35 1.68 0.78 0.09 -0.31 -1.78 -1.4 -1.06 -1.13
1.45 0.23 -2.71 -2.53 -2.24 -1.58 -0.05 0.77 1.52 0.96 -0.72 -1.27 -0.47 -0.68 -0.72 -0.38
2.92 - - -3.23 -2.57 -0.92 -5.55 -0.11 2.23 -1.56 -0.98 -1.52 -1.64 -4.06 -1.99 -2.5
1.46 -2.73 -0.14 -2.81 -3.01 -0.85 0.65 -0.1 1.25 0.67 0.96 0.6 -0.23 -2.33 - -1.35
1.15 0.36 0.02 -0.69 -0.04 -0.51 -0.25 0.2 0.68 0.5 -0.1 -0.34 -0.52 -0.63 -1.24 -0.56
1.05 -0.23 -1.61 -1.53 -1.48 -2.22 -2.86 -0.54 0.71 -1.97 -3.52 -1.62 1.42 1.53 0.7 0.6
-0.32 -2.82 -3.63 -2.67 -3.5 -1.57 -2.3 0.45 1.08 -0.73 -0.31 -0.22 1.15 0.5 -0.11 1.96
2.66 -1.26 - - - - - -2.37 1.43 0.91 - - - - 2.17 -
2.22 -0.71 -1.13 - - - - - 2.26 1.09 - - - - 1.75 -
2.79 -0.23 -2.22 - -7.21 - -8.02 -3.87 1.86 0.75 -1.36 -4.46 -0.48 -0.75 -1.0 -1.56
2.29 0.4 -2.46 -2.13 -0.01 0.42 -0.75 -0.13 1.29 0.8 -3.43 -3.16 -2.5 -1.79 -1.36 -1.72
0.19 - - - - 0.97 - -0.07 2.59 - - -0.01 - - 2.31 -
2.33 0.36 - -2.35 - -0.13 -0.18 -1.75 1.48 -0.46 -1.01 - 0.23 -0.87 0.2 -0.89
1.61 -3.21 -0.53 0.58 -2.74 -2.02 -6.54 -2.98 1.88 2.46 -2.06 -1.06 - -6.64 -3.57 -3.08
1.79 0.64 -2.8 -2.46 -2.67 - -0.3 0.04 1.1 -1.16 -0.13 -2.23 0.11 -1.98 1.09 0.58

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.