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Heatmap: Cluster_201 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-0.44 0.75 -1.61 -1.36 -1.7 -0.67 0.11 0.12 1.52 0.52 0.81 0.46 -0.44 -1.13 -1.67 -0.28
-0.04 0.89 -0.22 0.02 -0.48 -0.48 -0.37 -0.68 0.85 0.34 0.47 0.59 -0.53 -0.91 -0.73 -0.53
-1.89 1.04 -0.1 -0.63 -1.39 -2.25 -0.24 -0.07 0.97 0.79 -1.37 -1.68 -0.03 0.36 1.48 -1.87
-0.18 0.86 -0.01 0.25 -0.26 -0.08 0.55 -0.26 0.17 0.2 0.46 0.37 -0.75 -1.36 -2.09 -0.18
-0.24 0.29 -3.15 -2.55 -1.88 -0.6 0.36 -0.45 1.08 0.58 -0.26 0.18 0.33 0.5 -0.03 0.55
-3.85 1.9 -0.08 1.16 - -2.12 -3.75 -0.4 1.94 1.25 0.39 - - -1.26 - -
-0.53 0.69 -0.13 0.41 -0.83 -0.44 0.08 -0.63 1.43 0.63 -0.15 0.11 -0.58 -0.96 -1.89 -0.37
-0.94 0.94 -2.11 -1.54 -1.52 -0.98 -0.29 0.23 1.56 1.08 1.03 1.35 -2.87 -3.05 -3.78 -2.49
-1.53 1.09 -1.26 -0.12 -1.5 -0.78 0.18 -0.89 1.69 0.82 0.65 0.05 -1.09 -1.39 -1.06 -0.6
-0.33 0.39 -0.11 0.37 -0.22 -0.29 0.37 -0.99 0.14 0.38 0.72 1.08 -1.23 -1.15 -0.83 -0.73
-0.08 0.73 -0.75 -0.53 -0.84 -0.71 0.68 -1.09 0.55 0.5 0.85 0.92 -0.51 -0.74 -1.75 -0.51
-0.51 0.76 -0.24 -0.13 -0.47 -0.45 0.18 -0.59 0.69 0.65 0.81 0.62 -1.09 -1.36 -1.16 -0.31
-0.16 0.86 -0.17 -0.16 0.12 -0.04 0.31 -0.75 0.7 0.36 0.38 0.03 -0.7 -1.02 -1.25 -0.21
-1.61 1.91 -1.89 -5.36 -0.98 -0.44 0.4 -0.55 1.12 0.85 0.37 -1.22 -0.78 -0.49 -0.81 -0.32
-0.14 0.35 -0.21 0.28 -0.51 -0.83 -0.13 -0.76 0.74 0.51 0.88 0.55 -0.38 -1.17 -1.33 -0.06
-0.94 1.24 0.92 0.19 -0.58 -0.95 0.0 -0.48 0.96 1.3 -0.83 -0.56 -1.17 -1.72 -2.68 -0.71
-5.02 1.42 -1.02 0.05 -0.27 0.1 -0.39 0.19 1.87 1.41 -0.32 -0.23 -9.44 -8.54 - -
-2.71 1.36 -1.32 -0.32 -0.68 -0.83 0.77 -1.02 1.49 1.19 0.93 0.72 -6.15 - -6.17 -5.69
-6.13 2.0 0.28 0.29 -0.37 -1.44 -1.36 -1.62 1.79 1.51 -0.53 -0.66 - -5.53 - -4.14
-0.32 1.21 -0.9 -0.62 -0.74 -0.69 0.35 0.73 0.64 0.58 0.16 0.63 -1.29 -1.4 -1.01 -0.87
-0.53 0.77 -0.64 0.47 -0.38 0.21 0.75 -0.66 0.62 -0.07 1.17 1.07 -3.03 -2.7 -3.86 -2.64
-0.12 0.02 -0.35 -0.17 -0.23 -0.36 0.31 -0.41 0.46 0.52 0.06 0.15 -0.07 -0.07 -0.27 0.08
-1.93 1.56 - - -1.99 -2.15 - -3.19 1.78 1.1 0.88 -0.55 - - 0.77 1.25
-0.6 0.96 0.36 0.08 0.37 -0.7 0.03 -0.12 0.11 0.49 -0.21 0.34 -0.53 -0.49 -1.18 -0.46
-1.23 1.73 -1.51 -0.88 -0.77 -0.02 0.95 -1.32 1.03 0.73 0.9 0.38 -2.6 -3.53 -4.43 -1.77
0.07 0.87 -0.59 -0.09 -0.18 -0.02 0.54 -0.76 0.41 0.72 0.45 -0.05 -0.64 -0.85 -1.66 -0.33
-0.26 0.86 -1.12 -1.14 -0.9 -0.44 0.64 -0.33 1.03 0.3 0.51 0.52 -0.51 -0.67 -1.08 -0.18
0.16 0.58 -0.86 -0.21 -1.02 -0.38 0.45 -0.44 0.29 0.54 0.04 -0.14 -0.01 -0.01 -0.55 0.4
-0.89 -0.35 -2.11 -2.12 -2.61 -1.74 0.05 -0.87 0.52 0.01 -0.91 -0.48 1.21 1.06 0.74 1.27
-0.12 0.39 -0.38 -0.13 -0.54 -0.12 0.2 -0.69 -0.12 0.25 -0.05 0.27 -0.18 -0.22 0.14 0.67
-1.32 1.53 0.17 -0.03 -0.27 0.27 -1.85 -0.26 1.58 0.77 0.31 0.03 -3.79 -3.88 -2.4 -2.5
-0.46 0.81 -0.73 -0.28 -0.78 -0.65 0.83 0.16 0.13 0.66 0.65 0.84 -1.15 -1.22 -1.13 -0.73
- 1.7 -0.62 -0.5 -3.13 - -1.0 -2.74 2.16 2.1 - -1.78 - - 0.65 -
-0.2 0.43 -1.93 -1.68 -1.84 -0.45 -0.62 -1.13 1.4 0.39 0.81 0.61 0.2 -0.06 -0.69 0.19
-0.3 0.17 -0.67 -0.92 -0.93 -0.79 0.34 -0.42 0.33 -0.0 -0.12 0.15 0.34 0.12 0.52 0.78
0.2 0.69 0.06 0.56 -0.14 -0.29 0.57 -0.29 0.2 0.18 0.25 0.61 -1.38 -1.57 -1.38 -0.76
-1.21 0.63 -0.6 -0.3 -0.41 -0.67 -0.59 -0.65 0.91 0.8 -0.68 -0.18 0.26 0.2 -0.01 0.48
-0.29 0.74 -0.02 0.39 -0.14 -0.11 0.69 0.04 0.67 0.35 0.54 0.7 -2.4 -2.75 -2.55 -1.83
-0.04 0.69 -0.21 0.13 -0.81 -1.21 -0.98 -0.07 1.39 0.94 -0.1 -0.47 -0.39 -0.84 -1.08 -0.01
-0.51 0.57 -1.49 -1.4 -1.25 -0.19 -0.56 -0.52 1.18 0.51 0.15 0.59 -0.16 0.27 -0.01 0.01
-1.37 0.55 -1.66 -1.57 -1.91 -0.61 0.41 -0.46 1.41 -0.08 0.79 0.38 0.03 0.37 -0.74 -0.04
-0.15 0.3 -0.24 0.25 -0.09 -0.39 0.39 -0.33 0.2 0.23 0.34 0.44 -0.25 -0.39 -0.86 -0.11
-0.65 0.62 -0.2 0.04 -0.59 -0.36 0.27 -0.68 1.34 0.78 0.82 0.73 -2.05 -2.03 -2.35 -1.72
-0.96 -0.03 0.49 -0.6 - - 1.27 -1.58 0.37 -1.89 0.95 1.21 0.99 - 0.38 -0.72
-1.77 0.62 -0.84 -0.58 -1.36 -1.75 -0.34 -0.18 1.55 1.15 1.29 1.08 -2.04 -2.53 -2.79 -1.68
-1.63 -0.07 -0.88 -0.47 -2.45 -2.44 0.4 -0.87 -0.28 -1.03 0.28 0.37 0.92 0.58 0.19 1.53
- -0.27 -1.22 -0.88 -1.1 - -0.31 - - - -0.53 -0.63 1.69 -0.41 1.66 2.15
-2.34 1.61 -4.21 -2.76 -2.45 -0.18 -0.3 -2.82 1.47 1.46 1.22 1.01 -2.8 -2.9 -3.15 -1.93
-1.59 1.05 -0.53 -0.33 -0.87 -0.53 0.18 0.44 0.74 0.64 -0.04 0.39 -0.11 -0.39 -1.1 -0.47
-0.63 0.28 -0.67 -0.53 -1.16 -0.96 0.84 -0.11 1.34 0.59 0.81 0.26 -0.93 -1.14 -1.42 -0.32
-0.29 0.97 -1.22 -1.25 -0.93 -1.01 0.48 0.36 0.73 0.3 0.13 0.56 -0.45 -0.38 -0.49 0.0
-0.4 1.12 -0.29 0.2 -0.04 -0.68 -0.08 -0.58 1.2 0.82 -0.32 0.52 -1.22 -1.45 -1.53 -1.12
-0.52 0.97 0.05 0.15 -0.04 -0.99 0.42 -0.31 0.3 0.29 0.58 0.39 -0.48 -1.03 -1.18 -0.58
-0.44 0.98 -0.96 -0.19 -0.5 -0.77 1.0 -0.34 0.78 0.56 0.7 0.89 -1.71 -2.16 -2.67 -1.12
-0.5 0.88 -0.04 0.49 -0.08 -0.55 0.67 -0.74 0.31 0.23 0.43 0.77 -1.13 -1.33 -1.2 -0.99
-0.34 0.53 -0.53 -0.07 -1.56 -1.66 -4.71 -4.1 1.87 1.63 -1.28 -1.38 0.05 0.45 -1.18 -0.04
-1.0 0.52 -1.2 -1.82 -0.93 -0.85 0.61 -0.83 1.08 0.7 0.12 0.19 0.11 0.14 -0.2 0.22
-1.23 -0.92 -1.58 -1.68 -2.82 -2.59 -0.92 -1.15 -0.88 -1.07 -1.14 -0.66 1.1 1.42 1.68 1.58
-0.57 0.16 -0.46 -0.07 -0.38 -0.27 0.54 -0.38 0.63 -0.14 0.48 1.05 -0.21 -0.98 -1.13 -0.08
-0.94 0.79 -0.38 -0.07 -1.19 -0.37 0.41 -0.35 0.19 0.4 0.36 1.44 -1.03 -1.07 -0.38 -0.96
-0.81 0.76 -1.75 -1.67 -1.32 -0.11 0.16 -1.1 1.17 0.44 0.87 -0.14 0.31 -0.37 -0.83 0.38
-1.38 1.56 -2.17 -2.42 -1.42 -1.5 -0.6 -1.12 1.43 1.47 0.76 0.65 -0.99 -1.37 -1.4 -1.25
0.3 0.62 -0.37 -0.04 -0.52 -0.62 0.67 -0.42 0.57 0.31 0.63 1.0 -1.18 -1.52 -2.09 -0.98
-2.11 1.64 -3.34 -2.36 -4.1 -3.99 0.01 0.6 1.47 1.29 0.14 1.1 -2.14 -2.6 -2.24 -0.61
-1.65 0.93 -3.72 -4.8 -2.77 -3.29 -1.01 -0.51 1.08 1.0 1.1 1.06 -0.1 0.01 -0.02 -0.07
-6.52 -0.49 - - -5.58 -6.75 -3.48 -3.01 -0.58 -1.49 -1.46 -2.34 1.54 1.78 2.03 1.6
- 0.38 -1.99 -1.65 -6.68 - -1.43 -3.05 2.35 1.41 1.65 1.44 - - - -
0.2 0.16 -0.7 0.01 -0.34 -0.58 0.06 -1.01 0.56 0.0 0.21 -0.69 0.24 -0.11 -0.57 1.06
-1.45 1.12 -1.13 -0.63 -0.13 -0.49 0.87 0.39 0.07 0.95 0.66 1.17 -1.95 -2.3 -3.41 -2.13
-1.15 1.12 -0.64 -0.44 -0.58 -0.6 0.15 -0.27 1.22 1.01 0.83 0.93 -2.71 -2.82 -2.52 -2.14
-1.46 0.37 -0.4 -1.15 -0.98 0.0 0.73 -1.27 1.56 0.99 0.34 0.41 -0.66 -0.92 -1.81 -0.77
-1.27 0.95 -0.97 -0.09 -0.82 -0.85 0.44 -0.6 0.51 0.59 -0.28 -0.09 -0.07 0.55 -0.04 -0.03
-1.13 0.58 -0.88 -1.0 -1.0 -1.14 -0.49 -0.8 0.35 -0.02 0.19 -0.21 0.47 1.0 0.44 0.81
-0.71 0.58 -0.35 -0.15 -0.5 0.03 0.04 -0.49 1.22 0.88 0.68 0.34 -1.26 -1.37 -2.16 -0.55
-0.45 0.49 -1.15 -1.13 -0.87 -0.66 0.72 -0.09 0.77 0.59 -0.22 -0.29 0.21 -0.06 -0.4 0.52
-3.23 0.83 0.1 0.33 -1.43 -0.01 0.19 -1.78 1.09 0.68 1.18 1.37 -3.47 -2.88 -3.31 -3.81
-1.52 1.35 -2.46 -1.68 -2.14 -1.4 -3.33 -0.76 1.7 1.72 0.84 0.79 -1.78 -2.0 -2.28 -0.91
-0.16 0.35 -0.17 -0.22 0.23 -0.3 0.8 -0.5 0.45 -0.06 1.01 0.65 -1.14 -1.35 -1.23 -1.06
0.03 0.66 -0.62 -0.01 -0.81 -0.49 0.64 -0.83 0.35 0.85 0.82 0.99 -1.68 -1.51 -1.61 -0.92
-1.11 0.92 -0.88 0.34 -0.86 0.45 0.32 -0.83 0.25 0.84 0.28 -0.07 -0.34 -0.89 -1.08 0.22
-1.24 1.57 -1.57 -0.93 -1.13 -0.43 -0.03 -1.39 1.64 1.45 0.32 0.0 -1.55 -2.51 -3.54 -1.02
-2.51 1.81 -1.05 -0.63 -1.74 -0.15 0.82 -0.85 1.56 -0.15 1.23 0.09 - -1.73 - -3.08
-1.02 0.91 -1.42 -1.01 -1.41 -0.92 0.85 -0.25 0.81 1.38 0.7 1.23 -2.35 -2.21 -2.91 -1.49
0.36 0.63 -0.3 0.39 -0.28 -0.37 0.59 -0.25 0.49 0.06 0.32 0.18 -0.87 -1.08 -1.12 -0.32
-0.29 0.87 -1.33 -1.13 -0.56 -0.68 0.1 -0.68 1.07 1.11 0.77 1.17 -1.66 -1.73 -3.1 -0.87
-0.95 1.43 -2.75 -2.35 -0.69 -1.46 -0.1 -0.8 1.69 1.07 0.62 0.85 -1.41 -2.24 -2.63 -0.93
-2.35 1.06 -2.1 -2.02 -1.22 -2.07 0.69 0.18 1.57 1.39 0.42 1.46 -4.57 -5.67 -6.6 -3.7
-2.48 1.24 -0.37 -0.78 -0.32 -0.12 -1.48 0.0 1.86 1.67 -1.32 -0.92 -0.86 - -1.69 -1.21
-0.12 0.47 -0.26 -0.11 -0.26 -0.26 0.43 -0.01 0.27 0.32 0.21 0.16 0.05 -0.42 -0.85 -0.24

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.