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Heatmap: Cluster_172 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-0.01 -1.35 -0.77 -0.04 0.76 0.71 -0.43 -0.17 0.3 0.38 0.06 -0.94 -0.05 -0.36 -0.16 0.44
-0.65 -0.86 -0.71 -0.47 0.93 0.22 0.04 -0.41 -0.06 0.01 -0.15 -0.38 0.38 0.37 0.16 0.35
-2.78 - - -0.64 1.62 -1.0 - -2.63 -1.39 -0.33 - - -0.06 0.85 2.92 -
0.07 0.15 -0.68 -0.79 0.25 1.06 -0.3 -0.28 0.65 0.42 0.35 0.61 -0.79 -1.05 -1.28 -0.85
0.31 -1.27 -1.33 -0.26 0.39 0.73 -0.78 -0.78 0.45 -0.64 -0.67 -0.26 0.1 0.23 0.87 0.53
-0.66 -0.62 -0.17 -0.42 0.51 0.24 0.38 -0.0 -0.04 0.01 0.04 -0.13 0.26 -0.01 0.07 0.0
- -5.75 - - -4.05 -2.24 -7.09 -5.06 -3.23 -3.35 -5.37 -6.85 2.12 2.05 1.7 1.88
-5.01 -3.81 -0.8 -0.99 1.23 1.01 -0.59 0.0 1.1 1.17 1.18 0.79 -3.63 -4.5 -2.24 -4.01
0.77 0.19 0.0 -0.04 0.76 0.56 -2.8 -2.42 0.6 -2.1 -1.01 -1.58 0.49 0.55 -0.24 0.47
- - - - - 0.11 - -3.02 0.39 0.43 - - 2.66 - - 2.54
-2.55 -0.73 -2.7 - 1.95 1.67 -2.37 0.82 1.6 1.13 - - -0.79 -1.88 - -
-4.86 - -4.37 -1.72 0.22 0.65 -1.52 -1.36 -0.34 1.33 0.39 -0.95 1.42 0.4 -0.48 1.2
-1.05 -2.55 -2.4 -3.5 1.32 1.49 -5.82 -4.89 0.47 1.61 1.15 1.57 -5.24 -5.75 -5.26 -6.36
0.16 0.01 -1.36 -1.62 -0.06 0.52 0.38 -0.5 -0.19 -0.27 -0.29 -0.15 0.34 0.22 0.62 0.45
0.06 -1.38 -0.49 -0.43 -0.05 0.46 -2.09 -1.06 0.97 1.74 -0.35 -0.59 0.01 -0.19 -0.82 -0.19
-3.25 -3.61 -0.48 - 0.88 0.74 0.19 -0.9 1.2 0.31 0.57 -1.76 -2.03 0.19 -0.06 1.16
- - - - 0.99 0.21 0.56 -0.17 -0.88 -1.5 -0.15 -1.46 1.83 1.06 0.34 0.52
-0.18 -0.74 -1.3 -2.32 -1.15 -0.08 -0.99 -0.8 -0.46 -0.55 -0.44 -1.05 1.38 1.3 0.61 1.15
-1.17 -7.51 -2.6 -1.86 1.08 0.23 -2.2 0.99 -0.9 -0.91 -0.67 -0.24 1.35 1.24 0.25 -0.03
- - -5.4 - 1.17 1.21 1.19 -0.36 -0.46 -0.99 0.44 -0.45 0.59 0.32 -0.59 0.69
- - -4.98 -8.74 0.72 1.19 0.22 -0.8 0.97 1.41 0.99 0.32 -0.11 -1.2 -1.71 -0.35
0.05 -1.48 -1.11 -1.25 -1.05 0.23 -0.65 -0.64 -1.09 -0.76 -0.05 -0.11 1.54 0.63 -1.03 1.53
0.17 0.58 -1.08 -0.6 0.09 0.4 0.75 -0.16 0.46 -0.26 0.6 0.42 -0.63 -1.1 -1.23 -0.54
0.07 - -0.68 -0.34 -0.55 2.1 - 0.36 -0.09 0.97 - -0.1 1.23 0.14 - -
0.63 - - - -0.23 1.41 - -0.56 0.22 - - - 2.13 -0.55 - 2.01
-4.78 - -2.11 -0.43 0.39 1.97 1.41 -3.64 -0.36 1.72 0.55 0.23 -3.66 -4.76 - -2.2
-3.81 -3.55 -4.05 -0.4 1.7 0.72 0.89 -0.29 0.79 1.21 1.3 -0.5 -2.13 - - -
- 0.33 -0.28 -0.4 0.17 1.67 1.52 -0.07 - - -0.78 0.99 -0.2 - - 0.67
-0.18 -0.43 -0.14 0.14 0.68 0.6 0.32 -0.3 0.47 0.5 0.7 0.3 -1.22 -1.46 -1.84 -1.15
-2.21 -2.4 -2.62 -2.81 1.38 0.95 -4.3 -3.95 2.08 1.18 1.08 0.99 -4.03 - - -
-0.06 -0.01 -3.03 -3.92 0.29 0.3 -1.23 0.68 0.58 0.19 -2.24 -2.93 0.42 0.55 0.36 1.21
-1.5 -0.53 -0.9 -1.29 1.36 0.44 0.15 -0.77 0.67 1.23 1.06 0.69 -2.75 -3.18 -2.73 -1.6
-6.66 -8.65 -3.88 -2.89 1.43 1.0 -1.49 -1.39 0.72 1.67 1.7 1.13 - -7.39 -3.73 -6.42
0.06 0.03 -3.24 -9.3 0.26 0.3 0.87 -0.37 -0.15 -0.59 0.56 0.41 0.27 -0.1 0.02 0.35
-1.12 -1.83 -0.55 0.05 -0.09 1.48 -0.21 -0.16 1.03 0.5 0.55 -0.29 -0.47 -0.87 -1.96 -0.35
-5.38 -2.25 -3.46 -5.45 1.63 1.74 0.68 1.14 0.57 -0.62 -0.94 -2.05 -0.4 -1.37 -1.3 -0.05
-0.46 -1.44 -1.5 -1.46 -1.2 1.06 -2.6 -0.11 1.28 1.96 -0.28 -0.9 -0.33 -0.3 -0.72 -0.58
-0.81 -0.68 -0.76 0.02 0.35 1.17 -0.03 -1.58 -0.16 0.96 1.13 0.71 -1.1 -1.4 -2.14 -0.66
-5.4 -6.48 -1.81 -2.7 0.98 1.06 -0.48 -1.8 1.1 1.18 1.76 -0.15 -0.27 -2.31 -2.46 -0.9
- -1.85 - - 0.03 -0.14 -0.12 -2.39 -0.76 0.04 -1.25 -1.35 -0.01 1.56 - 2.66
0.53 -0.61 -1.68 -1.67 -0.56 0.66 -0.35 -0.21 -0.14 -0.48 0.1 -0.44 0.57 0.71 0.43 0.55
-0.25 -0.13 -0.37 -0.72 0.09 0.12 -0.62 -0.85 -0.53 0.35 0.15 0.39 0.43 0.44 -0.09 0.57
- - - - - 2.63 - - 2.25 1.3 1.36 - - - - -
-1.99 - -1.13 -0.79 0.58 2.55 -1.8 -0.63 1.47 -0.47 1.56 - - - - -
-0.04 -0.08 -0.37 -0.77 0.12 0.44 0.35 -0.07 0.12 0.34 -0.03 -0.15 -0.1 0.13 0.11 -0.47
-1.65 -1.3 -1.09 -3.34 1.24 1.65 -0.02 0.68 0.48 0.86 0.45 -1.31 -0.44 -3.85 -1.78 -0.88
- - - -5.44 0.74 0.96 0.42 -1.82 -0.25 0.28 0.15 -0.9 1.29 0.8 -0.43 1.08
-9.77 -4.59 -2.49 -3.31 1.19 1.47 1.93 0.67 -0.11 0.93 0.21 0.21 - - -3.97 -
- - - - 1.58 1.92 1.84 - -2.55 1.75 0.13 0.02 - - - -
-2.02 -0.86 - -5.04 1.02 0.58 0.26 1.26 0.7 -0.83 -1.53 -4.81 0.34 -0.56 -0.9 1.58
- - -0.44 - 2.28 2.14 -0.41 1.96 - - 0.43 - - - - -
-5.37 -5.25 -2.25 -1.52 0.85 1.67 -0.05 -2.12 -0.28 1.9 1.3 0.51 -1.83 -2.49 -4.0 -1.96
- - 0.43 0.22 1.98 1.87 -2.26 -0.86 -0.9 -1.28 0.85 0.79 - - -0.63 -
-1.18 -2.61 -1.79 -1.46 1.55 1.39 -1.47 1.85 -0.02 -0.64 - - 0.63 -0.79 -0.72 -0.23
-0.29 -1.99 -3.58 -1.36 -2.99 1.95 -5.42 -3.94 2.45 1.86 -1.47 -4.33 -2.61 -4.93 -2.64 -0.84
-0.79 -1.2 -0.49 -0.01 0.21 0.99 0.31 0.05 0.43 0.91 0.57 0.37 -1.7 -1.2 -0.82 -0.87
-8.92 -5.67 -1.17 -0.57 0.28 2.0 1.11 -0.35 0.91 1.41 0.37 -0.24 -8.22 -7.73 -7.25 -6.02
-0.06 0.22 -0.63 -0.51 -0.29 0.63 -0.02 -0.08 0.26 0.4 -0.24 -1.14 0.49 0.06 -0.38 0.27
-0.24 -0.17 -0.09 0.14 0.71 0.82 0.21 -0.06 0.28 0.41 0.46 0.39 -1.36 -1.18 -1.82 -1.49
-0.02 0.23 - -2.19 -0.38 0.89 0.34 -0.74 0.54 -1.88 -0.86 -0.82 -0.47 - 1.42 1.54
-0.77 -1.83 -1.09 -1.72 1.54 1.3 -1.45 0.22 0.29 0.35 -1.45 -1.38 0.36 -0.18 0.25 -0.21
-1.63 0.07 -2.53 -1.42 0.97 1.1 0.98 -0.39 1.26 0.88 0.0 0.03 -1.61 -1.61 -2.75 -2.53
-1.56 -2.59 -0.98 -0.97 -0.35 -0.16 -1.07 -1.03 -1.11 -0.72 -0.9 -0.59 1.3 1.03 1.18 1.48
-0.05 0.01 -1.32 -1.73 0.24 0.26 0.06 -0.51 -0.12 0.05 0.33 0.23 0.45 0.31 -0.6 0.64
- - -3.32 - 1.37 2.55 - -1.76 2.21 1.01 - -2.76 - - -1.43 -
- - 0.31 -0.35 -1.15 2.37 -0.14 0.16 0.55 1.95 -0.52 -1.74 - - - -
-0.21 -0.57 -1.07 -0.63 -0.34 -0.11 0.28 -0.36 -0.35 -0.42 -0.16 -0.44 0.91 0.65 0.16 0.92
-1.07 -0.02 -0.68 -1.36 -0.04 0.61 0.4 0.24 -0.47 -0.5 -0.06 -0.03 0.63 0.44 -0.23 0.5
-13.15 - -0.95 -1.08 2.12 1.17 -2.74 1.6 1.5 0.83 -1.64 -2.03 -5.88 -7.32 -4.79 -9.59
- - - - 1.58 0.96 0.4 -0.37 -2.32 -0.94 -0.05 -3.33 1.78 0.58 - 1.17
-4.28 -2.36 -0.15 -1.31 0.71 1.74 -1.19 -1.57 1.06 1.16 0.6 1.38 - - -1.93 -
-0.6 0.17 -1.75 -0.59 0.83 0.82 -0.83 -1.97 0.4 1.12 -0.32 -0.36 -2.95 0.41 0.96 -1.34
-0.23 -0.55 -1.5 -1.35 0.74 0.89 -0.39 -0.08 0.81 0.41 0.75 0.5 -1.08 -0.93 -0.61 -0.63
-2.98 -3.88 -3.14 -3.91 2.32 1.12 -4.02 2.23 0.82 0.62 -2.8 -2.49 - -6.23 -4.16 -
-5.0 -7.11 -1.07 -0.23 1.79 2.08 0.09 0.73 0.39 -0.44 -0.4 -1.02 -2.48 -2.21 -1.55 -2.52
-1.0 -5.17 -1.67 -2.28 -0.32 -0.62 -2.18 -0.86 -0.13 -0.3 -0.56 -1.21 1.68 0.97 1.08 1.38
- -0.71 - -2.1 -1.87 1.1 -0.87 0.21 1.88 1.88 -5.35 -5.46 0.15 -2.87 -3.12 1.18
-2.1 -0.38 -1.59 -1.19 -0.21 1.88 -0.68 -0.98 0.54 0.99 1.04 0.21 -0.98 -1.59 -2.91 -0.1
-1.55 0.65 -4.67 -2.76 1.67 0.75 -3.02 -0.29 1.68 0.6 1.2 0.13 - - - -
-4.16 -6.02 -2.06 -2.14 -0.65 1.45 -0.65 0.03 0.12 0.91 1.1 1.11 0.13 -0.1 -2.63 -0.03
-4.35 -2.78 -2.55 -2.63 -1.25 1.85 -0.57 -2.35 2.07 0.9 -2.29 -2.4 0.54 1.03 -1.66 -1.76
0.22 -0.52 -1.5 -2.17 -1.38 0.37 0.3 0.29 0.48 -0.85 -0.0 -0.95 0.46 0.71 0.08 0.93
- -0.64 0.21 -2.78 -0.66 1.98 -0.98 - 1.54 1.1 0.13 0.25 - - -0.22 -0.32
-1.48 -1.23 -0.79 0.83 2.23 0.46 0.41 -1.46 -1.57 1.0 0.43 0.44 - -5.87 -4.8 -
0.29 -0.34 -0.6 -0.45 -0.19 0.78 -0.73 -1.08 0.47 -0.83 -0.35 -0.46 0.46 0.35 0.2 0.73
0.28 -0.49 -3.14 -3.1 1.09 1.79 -2.88 -2.5 0.62 0.25 1.47 0.75 -2.06 -3.5 - -1.23
-3.1 -2.94 -3.04 -2.94 1.63 1.4 -0.62 -1.83 -0.03 1.09 0.87 0.26 -0.09 -0.67 -2.0 -0.16
- - -0.2 -0.4 0.47 2.49 -0.49 -0.46 -0.51 1.38 -0.64 0.57 - - -1.02 -
- - - 0.07 2.19 0.7 - - - 1.37 - - - - 2.63 -
-1.61 -1.39 -1.13 -0.91 1.02 0.98 -1.04 0.33 0.54 0.07 0.8 -0.38 -0.28 -0.21 -0.73 0.34
0.72 0.1 0.03 -0.31 0.69 0.82 -1.1 -0.5 0.43 -1.08 -0.0 -0.26 -0.19 -0.37 -0.78 0.0
-0.62 -1.59 -2.84 -1.84 -1.03 -0.05 -0.64 -0.28 -0.58 -0.51 -0.3 -0.92 1.67 0.52 0.56 1.52
-4.06 - -2.48 -1.71 0.21 0.17 0.06 -1.5 -1.11 -0.58 -0.17 -1.45 2.0 1.43 -0.2 0.87
- - - - 0.5 1.58 - - 1.41 1.05 1.83 1.72 - - - -
0.2 -0.88 -0.25 -0.65 0.54 0.98 -1.99 -0.77 0.79 -1.12 -1.73 -1.83 1.2 0.29 0.13 0.22
-1.64 -1.39 -0.64 -1.18 1.26 0.31 -0.26 -0.92 0.3 0.89 0.27 0.93 -1.16 -0.08 -0.41 -0.17
-7.37 -4.12 -0.19 -2.66 1.57 1.7 -3.25 -1.66 0.7 1.33 1.11 0.93 - - - -3.79
-1.11 -1.45 -3.01 -3.0 -0.03 0.83 0.13 -0.42 -0.16 -0.55 -0.11 -1.27 1.41 1.05 0.37 0.46
-2.2 -0.14 -1.39 0.53 - 2.43 -0.74 -0.05 1.65 1.42 - -1.82 - - - -
-7.31 - -2.07 -1.15 -0.64 2.32 -1.5 -1.78 1.09 1.87 1.12 0.08 - - - -
2.0 -4.79 -3.21 - 1.44 2.0 -2.64 0.15 1.18 -0.25 -1.33 - - -2.4 - -2.42

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.