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Heatmap: Cluster_245 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-0.15 -0.8 0.15 0.29 -0.33 -0.08 0.47 -0.18 0.22 -0.06 0.54 0.61 -0.33 -0.32 -0.41 -0.48
-0.43 -0.4 0.27 0.66 -0.12 -0.4 0.28 -0.25 0.32 0.22 0.47 -0.04 -0.05 -0.65 -1.07 0.18
-0.17 -0.75 -0.4 -0.02 -0.76 -0.54 0.55 0.09 0.13 0.24 0.69 -0.04 0.2 0.09 -0.46 0.2
-2.46 -0.03 -0.08 0.42 -0.29 -0.08 1.18 0.64 1.15 1.12 -0.15 -1.09 -1.59 -1.64 -2.72 -1.34
-0.3 -0.23 -0.19 0.35 -0.38 -0.14 0.49 0.19 0.7 0.79 0.29 0.01 -0.53 -1.02 -1.08 -0.47
-0.7 -1.77 -0.69 -0.22 -0.76 -0.3 0.74 0.38 0.59 0.49 0.69 -0.1 0.42 -0.31 -0.93 0.15
-6.49 - -0.99 0.75 -0.71 -1.33 1.3 -3.46 1.88 1.62 1.22 0.22 - - - -
-2.1 -5.13 0.31 1.0 -3.18 -2.86 -0.64 0.25 0.83 1.71 0.73 -0.24 0.01 -2.04 -2.03 0.46
-1.67 -1.77 -0.11 0.24 -0.48 -0.34 0.91 0.44 0.5 0.72 1.01 0.25 -0.52 -1.08 -1.31 -0.48
-0.77 -0.03 -0.5 -0.13 -0.68 -0.53 1.0 0.04 0.56 0.92 0.35 0.59 -0.92 -0.84 -1.19 -0.37
-5.43 -6.77 -0.84 0.24 1.16 -0.58 1.82 -2.48 -1.3 -2.39 1.78 1.84 - - - -
-3.27 -1.28 0.54 0.87 -0.86 0.39 0.64 -0.03 0.7 0.6 1.44 0.08 -1.93 -2.86 -2.77 -1.57
-0.61 -0.5 -0.66 -0.18 -1.06 -0.08 0.79 0.48 0.62 0.58 -0.16 -0.43 0.01 0.1 -0.19 -0.11
-0.19 -0.05 0.18 0.24 -0.76 -0.34 1.41 0.06 0.99 0.59 -0.91 -1.38 -1.12 -1.54 -0.06 -0.74
-2.28 -0.43 0.4 0.68 0.32 -0.65 0.78 -0.21 0.23 0.33 0.9 0.97 -1.74 -2.31 -0.9 -1.41
-0.95 -0.17 0.52 0.12 -0.3 -0.6 0.32 -0.19 0.48 0.22 0.43 -0.03 0.09 -0.01 -0.85 -0.02
-3.27 -3.57 0.13 0.51 -0.91 -0.89 0.8 0.4 -0.87 0.2 1.32 -0.34 -0.93 -1.15 -0.07 1.17
-2.75 -2.67 -2.97 -2.51 -3.23 -4.54 -2.42 -2.2 -1.49 -1.41 -2.06 -2.61 1.75 1.73 1.0 2.33
-0.56 -0.72 -0.09 -0.25 -1.14 -1.29 0.54 -0.22 0.37 0.36 0.52 0.35 0.51 -0.12 -0.31 0.42
0.2 -0.27 0.16 0.78 0.14 -0.38 0.61 -0.28 0.71 0.32 0.56 -0.01 -1.13 -1.59 -1.99 -0.8
-0.46 -1.28 -0.48 0.07 -0.63 -0.33 0.84 0.37 0.58 0.48 0.68 -0.38 0.22 -0.4 -1.3 -0.04
-0.0 -0.57 0.18 0.56 0.01 -0.33 0.64 0.03 0.75 0.91 0.26 -0.14 -0.83 -1.56 -1.76 -1.09
-1.34 -3.42 0.35 0.19 -0.29 -0.06 -0.89 0.46 0.92 1.31 0.38 0.07 -0.11 -0.59 -1.4 -0.48
-2.67 -0.49 0.02 0.47 -0.13 0.42 0.92 0.81 0.61 0.98 0.44 -0.24 -2.01 -2.26 -1.26 -2.05
-7.55 -7.31 0.22 0.37 -3.41 -2.65 2.21 0.28 0.6 0.24 0.72 1.63 - - - -
-3.88 -2.21 0.12 0.23 -1.71 -3.0 1.0 1.74 0.74 0.06 -0.34 -1.11 -0.51 -0.52 -0.95 0.84
-4.14 -3.09 0.91 0.66 -0.02 -0.34 -0.37 1.34 1.09 1.66 -0.32 -1.84 -1.6 -1.69 -3.43 -2.53
-3.65 0.05 0.74 0.79 0.31 -1.06 0.53 0.85 0.66 1.6 -0.12 -0.98 -3.07 -3.06 -3.99 -2.57
0.02 -7.38 -0.08 0.83 -4.0 -3.29 -1.42 -0.02 0.45 1.71 -0.47 -0.13 1.01 0.19 -0.68 -0.55
0.2 -1.0 0.31 0.73 0.01 -0.18 0.33 0.64 0.75 0.48 0.55 -0.22 -1.45 -1.58 -2.05 -1.29
-1.43 -1.66 -0.09 0.26 -0.45 -0.4 0.41 0.11 0.55 0.48 0.48 0.4 0.14 -0.31 -0.44 0.09
-0.5 -1.67 -0.85 -0.29 -2.3 -3.47 0.4 1.4 -0.12 -0.92 -2.02 -2.87 1.36 0.84 -0.13 1.16
-0.55 -1.22 -0.24 0.17 -0.44 -0.15 0.92 0.47 0.35 0.57 0.8 -0.33 -0.12 -0.88 -1.46 -0.18
-1.74 -1.85 0.48 0.53 -0.62 -0.04 1.04 -0.07 0.37 0.18 1.14 1.04 -1.89 -2.5 -1.91 -0.85
0.04 -0.04 -0.21 0.07 -0.5 -0.53 0.62 -0.1 0.32 0.56 0.34 0.41 -0.47 -0.52 -0.69 -0.21
-0.15 -0.47 -0.21 0.2 -0.15 0.04 0.46 -0.03 0.85 0.69 0.54 -0.09 -0.81 -0.87 -1.18 -0.51
-6.49 -5.82 0.52 0.53 -1.9 -0.06 1.42 -2.43 0.69 0.9 0.79 1.57 -2.47 -2.27 -2.23 -2.15
- - 0.15 -2.97 - - -1.4 -1.75 -0.7 -2.65 -1.61 -0.39 1.17 1.49 1.89 1.79
-9.3 - 0.2 -0.29 - - 0.39 -0.27 -0.14 -0.18 0.42 -1.19 1.03 1.37 0.96 0.81
- -3.53 -0.83 -0.86 -3.87 -3.04 0.82 0.38 2.03 1.58 1.57 -1.44 -0.5 - - -1.21
0.08 -0.8 0.23 0.52 -0.37 -0.27 0.61 0.05 0.63 0.28 0.73 -0.34 -0.41 -1.08 -0.57 -1.03
-0.98 -0.21 -0.11 0.24 0.12 -0.16 0.57 0.3 0.23 -0.06 0.57 0.53 -0.41 -0.71 -1.0 -0.13
-1.7 -2.71 0.12 -1.06 -2.0 -1.01 0.58 0.98 0.02 -0.25 -0.16 -1.48 2.08 -1.12 - 0.98
-0.33 -0.78 -0.69 -0.0 -0.76 0.37 0.28 -0.46 1.09 0.7 0.46 -0.06 -0.43 -0.47 -1.05 0.18
-1.31 -1.4 0.02 0.42 0.2 0.19 0.66 0.86 0.51 0.67 0.84 0.04 -0.99 -1.84 -2.41 -1.35
-1.68 -0.58 0.14 0.33 -0.89 -0.32 0.82 -0.06 0.64 0.41 0.69 0.89 -0.85 -1.15 -1.24 -0.31
-0.0 0.32 -0.35 -0.16 0.0 0.15 0.66 -0.62 0.45 0.52 0.62 0.53 -1.8 -0.78 -0.82 -0.92
-2.17 -0.64 0.51 0.28 -0.52 -0.58 0.95 0.29 1.01 1.07 0.25 -0.67 -1.46 -2.38 -1.89 0.29
0.02 -1.33 -0.27 -0.12 -0.39 -0.09 0.33 0.06 0.72 0.5 0.36 -0.47 0.02 -0.15 -0.54 0.23
-2.99 -3.22 -0.01 0.36 0.1 0.24 0.35 0.06 1.34 0.93 1.32 0.57 -2.72 -3.25 -3.96 -2.57
-1.14 -0.12 0.15 0.32 -0.35 -0.33 0.37 -0.29 0.6 0.57 0.67 0.35 -0.46 -0.89 -0.55 -0.38
0.07 -0.95 -0.05 0.21 0.12 -0.17 0.61 -1.01 0.57 0.49 0.57 0.53 -0.25 -0.87 -1.96 -0.24
-4.9 - 0.62 0.3 -1.77 -2.65 0.13 0.88 -1.17 -0.88 1.22 0.64 -0.6 1.13 -0.0 0.1
-0.96 -1.77 0.19 0.4 0.03 0.03 0.66 0.16 1.21 1.19 0.64 -0.06 -1.82 -2.78 -2.5 -1.77
-0.78 -1.1 0.11 0.58 -0.44 -0.29 0.51 0.04 0.5 0.22 0.51 0.42 -0.43 -0.46 -0.41 -0.34
-0.66 -2.09 0.33 0.44 0.4 -0.96 0.21 -0.8 0.58 0.61 -0.31 -0.09 0.17 -0.35 -1.32 0.9
-0.49 -1.0 -0.38 -0.08 -0.5 -0.5 -0.01 -0.16 0.23 0.04 -0.29 -0.01 0.82 0.4 0.23 0.59
-1.95 -1.53 0.16 0.5 -0.34 -0.73 0.19 0.89 0.75 0.29 0.67 -0.67 0.21 -1.07 -0.68 0.14
-1.72 -2.37 0.78 1.25 0.45 -0.4 0.52 -2.18 1.02 1.39 1.0 -0.35 -4.16 -4.41 -5.5 -4.02
-0.19 0.21 -0.24 0.44 -0.32 -0.22 1.11 -0.06 0.27 0.02 0.51 0.58 -1.14 -1.33 -1.04 -0.95
-2.85 -1.53 0.47 0.54 0.28 -0.95 1.16 -0.78 0.4 0.87 1.12 0.61 -1.29 -1.72 -2.93 -1.19
0.01 -0.47 -0.09 0.22 -0.14 0.06 0.32 -0.15 0.17 0.19 0.38 0.36 -0.09 -0.54 -0.52 -0.16
0.26 -1.06 0.29 0.48 -0.04 -0.53 0.3 0.08 0.96 1.02 0.02 -0.26 -0.79 -1.04 -1.44 -0.98
-0.11 -1.12 -0.06 0.35 -0.05 -0.41 0.26 -0.3 0.29 0.37 0.36 0.32 0.01 -0.27 -0.46 0.07
-2.26 -2.6 0.02 0.5 0.35 -0.13 0.95 1.02 -0.14 -0.14 0.77 -0.47 -0.04 -1.11 -1.72 0.09
0.97 - 0.83 0.77 - -0.18 -0.28 0.18 1.46 1.83 -0.44 -0.55 - - - -
-0.92 -1.3 -0.39 0.13 -1.0 -1.23 0.27 0.29 -0.14 0.21 0.19 0.62 0.57 0.53 -0.36 0.49
0.08 -0.89 0.27 0.71 -0.54 -0.22 0.12 -0.32 0.39 0.59 0.21 -0.33 -0.28 -0.68 -0.73 0.39
- - -0.6 0.58 -0.23 -1.67 0.98 0.51 1.02 0.36 -0.45 -2.09 - - - 2.32
- - 0.52 0.78 -3.23 -4.98 1.33 -0.44 1.69 1.18 1.6 -0.3 -3.03 - - -
-2.11 -4.48 0.77 1.39 -4.27 -4.44 -2.12 0.95 0.03 2.54 -0.35 -0.5 -1.7 -3.19 -2.6 -2.22
- - 0.4 1.05 -3.49 -4.6 -0.17 -1.59 0.39 0.51 0.15 -2.15 1.35 0.63 0.23 0.93
-0.18 -1.07 -0.45 0.13 -0.86 -1.44 -0.45 -0.59 0.33 0.42 -1.41 -0.93 0.94 0.65 0.17 1.26
-3.06 -2.47 -0.03 0.07 -1.22 -1.77 0.68 1.13 1.25 0.29 -0.26 -1.76 0.66 -0.41 -1.05 0.67
-1.2 -0.66 0.37 0.56 0.27 -0.56 0.44 -0.83 0.45 0.41 0.09 0.18 0.19 -0.61 -0.7 0.08
-3.79 - 1.91 -0.94 -0.29 -3.4 -5.03 2.14 2.54 -1.04 - -5.81 - - - -
0.13 -0.5 0.07 0.39 -0.13 -0.18 0.47 0.64 0.74 0.84 0.58 -0.13 -1.62 -1.78 -2.18 -1.38
-0.91 -0.23 -0.1 0.41 0.08 -0.59 1.04 -1.03 -0.13 0.2 1.15 1.17 -1.02 -1.96 -2.53 -0.65
-0.72 -2.22 -0.69 -0.26 -0.44 -0.43 0.63 0.04 -0.01 0.16 0.5 -0.59 0.95 0.1 -0.32 0.74
-1.04 -1.33 -0.05 0.56 -0.32 0.27 0.64 0.66 0.71 0.47 0.64 0.3 -1.06 -1.33 -1.68 -0.89
-0.9 -1.63 -0.15 0.03 -0.45 -0.25 -0.01 -0.03 0.82 0.51 0.31 -0.27 0.32 0.04 -0.05 0.24
- - -2.97 -1.64 -3.26 -1.0 -1.06 -0.54 0.61 -0.24 -0.48 -2.08 1.18 0.97 1.61 1.67
-0.32 -0.91 -0.27 -0.13 -0.44 -0.25 0.17 -0.42 0.47 0.11 -0.14 -0.08 0.47 0.04 -0.01 0.81
-7.12 - -0.1 0.38 -0.8 -1.69 1.58 1.13 1.66 1.84 -1.15 -1.6 -6.3 -3.05 -6.32 -6.2
-0.45 -1.14 0.35 0.66 0.06 -0.4 0.27 -0.14 0.41 0.35 0.36 0.29 -0.32 -0.6 -0.69 -0.23
-1.9 -2.31 -0.66 -1.15 -1.44 -1.35 -0.79 -1.1 -0.22 -0.85 -0.51 -0.16 0.88 1.33 1.45 1.34
-3.47 -1.23 0.61 1.35 -1.02 -0.31 0.09 0.25 0.7 0.59 1.04 0.5 -1.4 -1.54 -3.46 -1.09
-1.32 -1.14 0.31 0.54 -0.44 -0.08 1.0 0.05 0.4 0.2 1.07 0.49 -0.96 -1.68 -1.64 -0.7
-0.32 -1.47 -0.54 -0.09 -0.62 -0.39 0.64 0.44 0.51 0.6 1.07 0.06 0.0 -0.85 -1.46 -0.19
- - -0.58 -1.02 -2.46 -2.61 -0.45 0.94 -0.57 -0.51 -1.47 -2.58 1.2 1.35 0.72 1.79
- - 0.98 0.57 -1.0 -1.09 -0.43 0.02 1.04 0.8 0.64 -0.57 0.98 -0.91 -1.27 -0.24
- -3.04 -0.38 -0.43 -2.75 -1.04 1.62 0.5 1.24 1.26 1.21 -0.73 -0.97 -2.07 -0.58 -2.68
-3.51 -1.23 -0.2 0.18 -0.01 -0.21 0.85 0.41 1.41 0.93 1.13 0.42 -2.97 -3.93 -4.05 -2.74
-0.31 -0.69 -0.35 0.34 -1.04 -0.49 0.2 0.48 -0.7 -0.68 0.52 0.23 0.54 0.37 -0.38 0.51
-0.71 0.2 -0.02 0.47 -0.07 0.02 0.83 -0.12 0.36 0.27 0.77 0.79 -1.76 -2.02 -1.55 -1.32
-0.24 0.06 0.12 0.24 0.06 0.02 0.59 -0.69 0.24 0.36 0.67 0.62 -0.97 -1.26 -1.24 -0.46
-1.56 -1.15 -2.0 -2.19 - -4.41 -1.56 -0.8 -0.42 -0.47 -0.7 -1.88 2.06 1.14 -0.35 2.1
-0.89 -0.13 0.2 0.56 -0.19 -0.11 0.31 0.17 0.01 0.25 0.3 0.11 -0.29 -0.02 -1.11 -0.04
-0.76 -0.74 -1.31 -0.45 -2.93 -3.15 0.04 -0.6 -0.21 -0.0 -0.9 0.24 1.1 0.66 0.51 1.59
-0.4 -0.19 0.09 0.42 -0.76 -0.67 1.01 -0.08 0.04 0.07 0.58 0.27 -0.47 -0.38 -1.38 0.18
-5.75 -4.75 -0.37 0.27 -1.81 0.01 1.61 0.09 1.21 1.17 0.07 1.21 -2.49 -3.08 -3.38 -2.05
-3.25 -3.0 0.69 0.31 -1.82 -1.99 -0.1 0.89 1.02 0.42 -0.32 -1.02 0.49 0.64 -0.43 0.28
-2.16 -2.33 -0.54 -0.87 -2.25 -1.95 -1.37 0.25 -0.18 -0.45 -0.93 -0.43 2.02 -0.24 -0.73 1.97
-3.25 -2.85 -0.45 0.48 -0.86 0.46 0.53 0.23 1.56 1.1 0.74 0.53 -1.85 -2.44 -2.92 -1.87
-0.6 -0.98 -0.39 0.15 -0.58 -0.44 0.45 -0.03 0.11 0.29 0.25 0.04 0.43 0.04 -0.18 0.51

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.