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Heatmap: Cluster_232 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-1.06 1.94 2.36 1.98 -0.35 -0.51 - -7.34 - - - - -2.42 -3.51 -0.44 -3.54
0.48 0.73 -1.59 -1.34 -0.45 -1.0 -0.29 -0.93 -1.16 -1.74 -1.27 -1.54 1.32 1.05 0.87 0.8
4.0 - - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
3.39 1.3 - -8.43 -5.46 -5.63 -9.02 -1.29 -8.79 -7.41 -8.11 -5.55 -0.35 -0.77 -1.55 -0.17
2.84 0.38 -0.21 - - - 1.43 -0.45 - - - - 1.69 - - -
1.25 -2.75 0.37 1.7 0.5 0.75 -1.88 -2.86 - - - - 0.7 1.61 - -0.42
1.91 -0.08 -2.74 -3.19 -2.08 -2.7 -0.36 0.03 -2.7 -2.48 -0.26 -0.59 1.01 0.58 -0.16 1.38
3.96 -4.03 - - -7.7 - - -7.67 - -7.21 - - -3.75 -4.2 -3.62 -3.13
-2.54 3.85 -2.14 -3.4 -1.2 -2.52 -2.08 -4.79 - - - -4.18 -4.75 -3.76 - -
2.9 - - - - - - -0.95 - - - - - - 3.0 -
- 4.0 - - - - - - - - - - - - - -
1.09 - - - - - - - - - - - - - 3.79 -
0.66 -0.89 0.75 -1.2 0.52 1.02 -2.28 -1.74 - - - - - 0.81 2.29 0.19
-0.73 1.04 - -2.56 - - - -1.56 - - - - 2.34 1.83 -0.01 1.7
1.28 1.07 -3.39 -1.48 -1.35 -1.9 -0.28 -0.17 -2.37 -2.31 -0.45 -2.25 1.11 0.65 0.58 1.07
2.31 -1.25 -0.12 0.22 0.11 -0.02 -0.56 -1.04 0.38 0.38 0.18 -0.07 -2.64 -2.92 -2.95 -2.42
3.29 -1.5 - - - - - -2.6 - - - - - 0.87 1.94 -
-1.98 2.33 -3.37 -5.36 -3.42 -2.98 -4.46 -2.81 - - -7.03 -5.14 1.54 1.78 0.66 1.17
2.89 3.1 - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
-0.67 3.19 1.22 -1.7 -0.57 -2.06 -3.7 - -2.46 - - - -0.1 -0.62 - -0.23
3.96 -5.89 -2.37 -2.53 -5.08 -5.01 - - - - - -8.79 - - - -
4.0 - - - - - - - - - - - - - - -
3.1 2.25 - - - - -1.75 -0.49 - - - - - - - 0.74
- 3.72 1.5 - - - - - - - - - - - - -
-2.46 -0.43 1.89 0.97 1.58 1.81 -7.15 -6.89 - - - - -2.74 - 1.11 -0.75
- 3.69 - - - - - 1.64 - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
-1.7 2.71 0.08 -0.03 0.75 1.72 -1.83 -0.11 -4.57 -2.93 -2.39 -1.03 - -6.32 - -4.35
2.72 2.06 -1.99 -3.57 -1.91 -1.35 -1.09 -0.93 -7.2 -5.33 -3.93 -2.4 -0.13 -0.99 -1.87 0.37
1.03 2.97 -5.63 -3.71 -1.88 -1.92 -4.43 0.46 0.06 -0.02 -2.3 -3.06 -1.22 -0.35 -4.33 -1.18
3.99 -6.19 - - - - - - - - - - -3.67 -5.76 - -
- 0.63 - - -3.36 -1.21 -1.84 -1.68 - - - - 1.88 2.18 1.4 1.3
-0.38 -1.09 1.36 1.02 2.0 1.4 -0.85 -3.01 -4.61 -3.55 -1.43 -3.04 -1.49 -0.75 -0.15 -1.42
- 4.0 - - - - - - - - - - - - - -
0.14 1.9 -1.1 -2.35 - -2.72 -1.77 -3.33 - -0.48 -0.44 - 0.23 0.95 - 2.43
3.76 0.38 -4.72 -3.38 -3.36 -3.01 -3.65 -2.37 -3.73 -4.67 -4.63 - -4.39 -2.9 -3.41 -3.51
- 1.67 - - - - - 0.01 - - - - - - 3.56 -
0.7 0.56 0.95 1.57 -0.6 0.87 -1.55 -1.07 -0.01 -0.24 -3.37 -3.48 -2.14 - 1.16 -2.27
-1.93 -0.48 1.14 1.0 1.25 0.51 -0.89 -6.59 0.71 -1.38 -1.78 -2.89 0.07 -0.26 0.53 -0.51
3.83 0.84 - - - - - - - - - - - - - -
1.65 1.36 - - -8.47 -9.64 -6.69 0.95 -6.23 -5.81 -4.55 -5.47 1.24 0.76 0.04 1.67
-3.13 3.12 - - - -5.7 -4.34 -2.53 1.66 0.54 -0.62 0.73 - - - -
0.41 1.72 -0.2 -0.11 -0.43 -0.25 -0.39 0.1 -0.96 -1.58 -2.23 -1.44 0.55 0.18 -0.62 0.59
-1.7 2.48 -0.87 -0.75 0.45 1.2 0.56 -0.17 - - -1.99 -0.51 -1.76 -0.86 0.21 -
3.03 1.23 -0.93 - - - -2.19 -0.21 - - - - - - 1.95 -
3.02 -0.96 -3.26 -2.34 -3.54 -5.29 - 1.33 1.66 0.29 -4.58 - - - - -
2.57 - 0.66 0.6 -0.34 1.05 1.25 -1.11 - - -0.25 -1.23 - - - -
2.74 -0.58 -1.15 -0.77 -0.38 -0.69 -0.1 -1.07 0.06 0.28 -0.95 -1.39 -1.06 -1.12 -2.74 -0.76
2.17 -0.42 -1.92 -1.39 -1.35 0.33 -1.04 -0.07 0.89 0.82 -0.37 -2.34 -0.16 -0.63 -1.48 -0.86
0.87 3.82 - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
2.84 1.49 -1.17 -0.68 -1.59 -0.99 -0.88 -0.83 0.19 -0.65 -0.5 -1.94 -3.42 -3.89 -6.03 -3.81
1.5 0.17 - - - - - - - - - - - 0.54 3.2 0.51
3.14 0.01 -0.73 -3.21 -4.99 -2.57 -2.21 -0.73 -4.55 - -2.14 -3.56 0.49 0.22 -2.23 0.37
-1.39 3.97 - - - - - - - - - - - - - -
3.92 - - - - - - - - - - - - - -0.27 -
-1.01 -1.0 1.62 1.3 1.9 1.99 -1.91 -4.79 -2.56 -5.3 -5.27 - -2.03 -2.54 -0.73 -2.15
1.64 0.04 - -5.08 - -1.75 -4.5 -1.57 -4.84 - -4.75 - 1.78 1.57 0.05 1.86
- 0.32 - - - -0.13 - - - - - - - - 3.79 -
1.22 3.55 -1.89 -0.96 -1.77 -1.79 - - -2.27 -2.22 - -2.29 - - - -
0.97 2.41 0.5 -0.27 - - -2.28 -1.06 - - - - 1.03 -0.8 1.27 -0.41
4.0 - - - - - - - - - - - - - - -
1.61 2.43 - - - -0.18 - - - - - - - - 2.74 -
-0.17 -0.56 0.29 -0.25 0.83 0.32 1.17 -0.35 0.08 -0.9 -1.85 -2.96 -0.08 0.26 0.54 -0.5
-0.61 - 1.85 1.95 1.95 2.0 - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.