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Heatmap: Cluster_321 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-0.15 0.64 1.43 - - -0.17 0.16 1.51 0.47 - - - - 0.64 - 1.61
-3.11 0.23 -0.03 -0.93 -0.29 -0.72 - 0.75 -1.0 - -1.87 - -0.1 1.12 1.87 1.36
- 2.22 - - - - - - - - 3.5 - - - - -
- - - -1.8 - - - - - - - - 2.65 2.74 -0.28 0.94
-0.75 - - - - - -0.58 1.51 - - - - 2.0 - 2.98 -
- 1.59 0.19 2.11 1.31 0.15 0.51 1.33 - - - - - - - -
- - - 2.65 - 3.28 - - - - - - - - - -
- - 3.08 2.44 - 1.08 - - - - - - - - - -
- - 2.07 - 2.17 - - - - - - - - 2.87 - -
-2.85 - 1.08 1.43 0.52 1.76 -0.27 0.24 - - 1.38 0.69 - - - -
-0.38 - - - 1.55 - - - - - - - - 1.24 3.31 -
- 1.86 - - 1.9 1.82 - 2.35 - - - - - - - -
- - - 3.87 - - - 0.43 - - - - - - - -
- - 2.54 1.42 1.2 2.38 - - - - - - - - - -
-4.01 0.77 0.73 0.41 0.48 1.68 0.5 -1.53 -4.26 - 1.32 1.05 - - -1.93 -
-3.1 -1.92 - -1.49 -2.79 -2.84 - - - - - - 2.33 2.09 0.99 1.89
-4.27 -2.21 -0.71 0.33 -1.06 -1.1 -0.55 -3.11 -1.64 -1.9 -1.55 -1.97 1.79 0.76 1.54 1.52
- - - - 2.85 1.7 - -0.94 2.32 - - - - - - -
-1.71 -0.16 0.11 0.79 -0.15 1.63 -0.24 0.37 -1.88 - -1.75 - 0.18 - - 2.05
- - - - - - - 0.15 - 0.12 - - 0.35 - 3.65 -
- - - - 2.61 - - - - - - - - 3.3 - -
- - - - - - - - - - - - - - 4.0 -
- - 2.12 2.72 - 2.35 - - - - - - - - - -
- -1.18 -0.26 1.11 -0.17 1.34 - - - - - - 1.63 - 2.6 -
-0.76 - 0.03 -0.4 -1.92 0.55 -4.73 -2.62 - - -3.39 - 1.67 1.35 2.0 0.91
-0.05 - 0.91 1.26 - 2.9 - - - - - - - 1.71 - -
- - - - 4.0 - - - - - - - - - - -
- -1.83 1.04 -0.37 0.86 1.55 0.42 -0.68 -0.29 -3.04 1.24 1.21 - - -0.84 -
- - - - - - - 0.26 - - - - - - 3.89 -
- -1.77 -1.62 - -0.59 -1.63 -0.98 -2.32 -1.99 -0.94 -0.9 -2.01 1.86 1.99 0.25 1.74
- - 1.14 - -0.33 1.13 - - - - - - - - 3.43 -
-0.31 - 1.12 2.87 1.66 0.5 - - - - 0.21 - - - - -
- - -1.08 -0.08 -0.45 -2.04 -1.06 -0.49 -1.7 - - - 2.02 2.39 - 1.49
-0.7 - 0.66 0.41 - 2.95 - - - - -0.26 - - - 1.97 -
- - - - - 2.39 - - - 0.5 - - 1.72 - - 2.6
- - 1.87 - -0.4 3.29 -1.47 0.55 - - - - - - - -
- 1.23 1.83 - 1.95 - - - - - - - - 2.64 - -
-3.04 -4.14 -0.6 -0.44 -0.57 -1.5 -0.62 -1.22 -0.76 -0.8 -0.35 -1.37 1.81 0.32 -0.03 2.09
- - 0.23 - - - - - - - - - - - 3.89 -
- - 1.03 2.95 1.14 2.0 - - - - - - - - - -
- - - - - 0.93 - - - - - - - - 3.82 -
- -2.09 -1.58 0.52 -2.45 1.47 -0.89 - - -1.96 -1.93 0.04 0.92 -1.76 2.63 -0.79
- 0.72 1.25 1.58 - - - - - - - - 3.17 - - -
- - - 0.49 0.24 1.71 - 1.59 - 2.41 0.87 - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.