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Heatmap: Cluster_85 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- -4.35 - - - - 0.57 0.26 -2.18 -3.12 - -3.19 1.94 1.43 1.7 1.6
-3.58 -5.82 -3.73 -3.77 -3.34 -4.38 0.84 0.23 -1.65 -3.33 -3.07 -2.46 2.0 1.62 0.78 1.65
-4.87 -6.3 -2.73 -2.46 -4.06 -4.69 1.1 0.24 -1.46 -2.74 -1.95 -4.02 1.93 1.49 0.74 1.62
- - -4.16 - -2.22 -3.87 3.07 2.07 -0.19 -0.94 -0.0 -0.64 - - - -
-0.83 -1.94 -1.0 -1.17 -1.14 -0.73 1.52 0.77 -0.34 -1.43 -1.18 -1.45 0.43 0.33 1.38 0.51
- - - - - - 1.56 0.72 - - - - 1.97 0.99 -0.15 2.2
- - - - - - -0.61 -0.86 - - - - 1.4 2.22 2.26 1.43
-1.57 -1.43 -5.07 - - - 1.69 1.4 - - - - 2.11 0.87 -1.37 1.52
- - - - - - 0.33 -0.1 - - - - - - - 3.79
- - - - - - -0.43 -1.47 - - - - - 2.63 3.12 -
-2.16 -1.65 - - - - 2.83 2.66 - - - - - - - 1.0
- - - - - - 2.26 1.27 - - - - - -0.1 2.97 -
- - - - - - 1.07 0.58 - - - - 1.78 1.73 1.59 1.4
- - - - - - -3.0 -3.46 - - - - - 0.79 2.86 2.76
- - - - - - 2.27 1.15 - - - - 1.55 0.61 -1.64 2.07
- - - - - - -0.85 -1.55 - - - - 3.05 -0.37 - 2.6
- - - -7.23 - - 1.66 1.01 - - - - 1.41 1.56 1.1 1.62
-4.11 -5.86 -5.33 -4.59 -3.47 -5.96 0.16 -0.23 -4.03 -4.29 -6.26 -4.36 2.5 2.08 -2.03 1.79
-0.82 -2.53 -3.19 -4.53 -3.47 -3.32 2.04 1.5 -2.45 -2.75 -0.83 -2.31 0.81 0.71 -0.68 1.52
-0.83 -0.87 -3.96 -4.12 -2.88 -1.86 1.83 0.82 -2.36 -2.59 -3.66 -4.14 0.88 1.18 1.06 1.23
- - -4.19 - - - 2.22 1.61 - - - - 1.08 0.97 1.11 1.0
- - - - - - 0.51 0.49 - - - - 0.77 1.55 1.74 2.38
-4.08 -4.44 -5.99 - - - 1.0 0.4 -6.61 -6.31 -4.09 -4.83 1.94 0.9 1.01 2.24
- - - - - - 0.62 0.12 - - - - 1.88 1.85 1.88 1.27
-4.0 -1.83 - - -4.16 -5.31 1.62 0.33 -3.68 -2.7 -2.11 -2.43 1.83 0.9 0.19 2.01
-4.28 -4.74 -5.54 - - - 0.75 0.53 -4.92 - -5.33 - 1.8 1.57 0.74 2.19
- - - - - - 0.84 -0.15 - - - - - 2.01 2.66 1.56
- - -5.65 - - - 0.86 0.63 - - - - 1.51 1.94 1.46 1.66
- -1.28 - - - - 1.49 0.38 - - - - 1.26 - 2.23 2.14
- - - - -2.4 -2.06 1.35 0.85 - - - - 1.72 1.32 0.93 1.82
- - -4.23 - - - 2.12 1.93 -3.92 - - - 1.29 0.59 -0.53 1.62
- - -6.27 -3.91 - - 0.58 -0.42 - - - - 2.23 1.53 1.06 2.01
-5.2 -3.95 -2.17 -1.84 -1.89 -1.2 2.73 2.04 -0.26 0.1 -1.29 -2.86 -2.92 -2.79 -1.21 -0.36
- - -5.42 - -6.87 - 0.95 0.69 - - - - 2.27 0.77 0.47 2.17
- - -3.81 - - -7.66 2.17 1.5 - -8.0 - - 1.61 0.94 -0.02 1.4
- - - - - - 1.12 0.61 - - - - 1.5 1.85 0.1 2.26
- - - - - - 2.64 2.11 -2.98 - - - 0.08 -0.05 -0.63 1.41
- - -1.95 - - - 0.97 -0.0 - - - - 2.29 2.04 1.53 -0.16
- - -3.56 -6.0 -3.11 -3.78 2.22 1.42 -0.54 -6.3 -4.94 -5.78 1.76 0.42 -0.5 1.12
-1.14 - - -1.52 -1.74 - 2.71 2.69 - - - -1.28 - 0.54 - -
-4.33 - - - - - 1.72 0.96 -2.99 - -1.89 - 0.53 2.37 1.33 0.24
- - - - - - 1.98 1.18 - - - - 2.18 2.08 - 0.06
-1.73 -1.51 -4.95 - -3.7 -3.32 1.65 0.84 -3.96 -3.44 -1.2 -2.51 1.24 0.92 0.64 1.86
-2.46 -5.03 -5.88 - -4.81 - 1.36 1.04 -3.85 -4.67 -3.21 -4.21 1.81 1.35 0.63 1.68
- - - - - - 3.04 2.6 - 0.77 - - - - - -
- - -2.25 -2.94 - -6.9 1.1 0.16 - - - - 2.2 1.62 0.34 1.78
- -6.2 - - - - 1.76 0.48 - - - - 1.43 1.63 0.94 1.8
-4.38 -5.46 -7.2 - - - 1.42 0.65 - - - - 2.11 1.22 0.66 1.78
- - - -5.53 - - 2.34 1.65 -4.47 - - - 1.52 -0.01 -0.89 1.74
-5.09 -4.86 -2.85 - - - 2.32 1.14 - - - - 2.02 0.81 0.09 0.78
- -5.08 -2.98 -2.24 -3.44 -2.61 2.86 2.79 -4.01 - -2.33 -2.02 - -2.16 -1.68 -2.78
- - -5.43 -6.08 - - 1.01 0.63 - - - - 1.72 0.96 1.25 2.25

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.