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Heatmap: Cluster_236 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-0.57 -2.61 -0.81 -0.54 -0.52 -0.84 0.55 1.21 -0.18 0.38 1.28 0.99 -1.0 -1.21 -0.69 -0.49
- -5.02 -1.58 -2.05 -0.36 -0.02 -0.68 2.55 0.96 0.91 0.69 0.59 -2.48 - - -
-1.13 -1.17 -0.78 -0.13 0.71 0.41 1.16 1.32 -2.72 -3.18 1.5 1.29 -3.39 -3.82 -3.77 -2.96
-7.86 -0.16 -0.86 -0.4 0.2 0.01 0.19 2.39 0.36 1.36 -0.3 -0.87 -7.77 - -6.79 -4.89
- -1.05 -1.64 -0.73 0.15 -1.1 -0.06 1.67 0.8 0.57 1.89 0.94 - - - -5.47
-5.3 -0.12 -1.75 -2.42 0.05 0.25 0.85 0.03 -1.41 -1.63 2.23 1.81 -2.16 - - -1.29
-0.4 -1.21 -0.73 -0.44 -0.45 0.19 0.63 0.77 -0.24 -0.52 0.91 0.05 0.31 -0.19 -0.69 0.19
-4.27 -4.68 - - -3.27 - 0.3 1.67 - -1.51 1.34 0.83 -0.8 0.33 1.18 1.4
-2.57 -5.46 -1.13 -1.47 -1.36 -1.05 0.15 0.14 -3.81 -3.29 0.77 0.03 1.83 1.38 -0.02 0.89
-0.35 -0.21 -0.63 -0.34 -0.13 -0.03 0.44 -0.06 0.0 -0.51 0.8 0.58 -0.0 -0.07 -0.33 0.03
-6.67 -2.42 -1.34 -2.04 0.25 0.58 1.43 1.22 -4.01 -3.95 1.2 1.28 -0.07 -1.99 -3.01 0.36
-6.19 -2.32 -0.97 -1.62 0.52 0.51 0.13 2.28 0.93 0.84 0.52 -0.29 -3.7 -4.18 -7.53 -4.82
-4.8 - -5.24 -4.18 -2.44 -3.06 0.38 0.66 -3.09 -2.5 0.46 -1.14 1.72 1.32 -3.94 2.24
-2.44 -1.52 -2.85 -3.41 -1.71 -0.48 -1.91 2.72 0.67 0.79 1.14 0.4 -2.31 -3.41 -4.66 -2.59
-9.65 -6.39 -4.87 -4.84 -0.65 -0.54 1.05 1.65 -3.5 -4.66 2.29 2.12 - - - -
- - - - -1.26 - -2.06 0.49 -0.19 -1.14 -0.1 -0.21 2.22 1.01 1.5 0.4
0.11 -0.29 -2.23 -2.53 -0.78 -0.15 0.52 1.79 -1.27 -1.01 1.39 1.18 -1.29 -1.81 -1.8 -0.82
-1.71 -0.13 -0.41 -0.71 -0.36 -0.08 0.43 0.77 -0.12 0.58 0.61 1.26 -1.23 -0.72 -0.36 -1.07
-0.97 -0.14 -1.33 -1.14 -0.33 -0.02 -0.06 -1.09 -1.44 -1.86 1.22 0.96 0.85 0.32 -1.64 1.15
-1.29 -2.85 -1.29 -0.79 -1.22 -0.68 0.48 0.58 -2.09 -1.98 0.87 -0.09 1.13 1.08 0.47 0.65
-6.84 -5.1 -6.81 -9.17 -7.38 -8.54 -4.84 -2.72 -9.93 -7.87 -0.25 -0.37 2.3 2.12 0.69 1.71
-6.18 -0.08 -3.05 -3.87 -0.51 -1.04 0.91 0.97 -4.91 -7.02 2.2 2.36 -6.76 -7.85 - -4.56
-6.65 - -5.87 - -3.15 - -5.22 0.8 -2.98 -3.07 2.88 2.7 - - - -
-5.86 -4.44 -2.64 -2.16 0.23 0.69 0.78 0.51 -4.91 -7.85 2.01 2.48 - - - -
-6.23 -6.18 -4.78 -3.45 -0.86 -0.46 -1.19 2.29 1.49 1.31 0.97 0.9 -5.56 -7.66 -4.0 -4.36
-6.13 0.6 -1.88 -1.69 -0.7 0.75 0.21 2.4 -0.68 -2.53 1.09 1.15 - - - -
-0.92 - - - -0.9 - 0.31 0.94 - -0.35 -0.31 - - 0.79 - 3.08
-6.47 -1.98 -3.68 -4.35 -1.35 -2.09 -0.79 1.31 0.01 -0.37 2.3 2.36 - - -4.38 -5.48
-5.71 -0.1 -3.18 -4.41 0.4 -0.02 0.81 1.71 -3.14 - 2.0 1.78 - - - -
-1.58 -1.92 -2.37 -1.96 -1.99 -1.03 -3.81 2.87 0.77 0.86 1.3 -2.13 -2.1 -3.47 -5.1 -2.0
-0.29 -1.67 -0.96 -1.17 -0.84 -0.33 -0.01 0.44 -0.95 -1.73 1.28 1.53 0.17 -0.34 -0.03 0.21
-1.75 -0.5 -1.76 -1.05 -0.84 -0.38 0.8 0.84 0.06 0.66 1.39 1.03 -0.78 -0.98 -1.35 -0.71
-1.68 - -1.43 - 0.23 - 0.12 0.44 - - 1.26 0.15 3.04 - - -
-5.48 -4.46 -4.03 -3.7 -3.04 -3.07 -1.65 -0.91 -3.01 -3.54 -0.41 -0.66 2.25 2.23 0.04 1.4
-7.06 -5.81 -3.1 -2.03 0.02 -0.12 1.75 1.14 -3.7 -2.47 2.13 -0.1 0.1 -2.28 -3.38 0.22
-8.3 -0.86 -1.74 -2.61 0.96 1.37 0.13 1.46 -8.47 -7.41 1.73 1.71 - -8.24 - -7.27
-3.52 -0.77 -1.5 -3.71 -0.27 -0.55 0.57 1.82 1.4 1.18 0.25 0.9 -3.71 -2.22 - -3.25
- - - - - - -0.22 -0.88 - - 0.71 - 2.85 0.16 1.24 1.21
-7.49 -8.77 -1.98 -2.73 0.56 -0.35 0.55 0.14 -8.61 -8.55 2.33 2.35 -2.81 -2.03 -2.99 -2.96
-4.44 -8.99 -1.49 0.08 -0.08 0.47 1.38 1.02 -6.08 -7.24 1.86 1.83 -3.56 -3.45 -3.76 -2.95
-4.36 -4.52 -3.6 -4.04 -3.89 -3.59 -2.17 -1.01 -5.39 -5.81 0.61 0.83 1.43 1.2 1.99 1.36
-4.03 -4.1 -1.85 -1.9 0.07 -0.38 1.75 1.54 - - 1.38 1.93 -3.64 - -1.66 -1.18
-4.41 0.44 -1.8 -1.54 -0.94 -0.48 1.77 1.53 -1.46 -3.23 1.66 1.47 - - -4.8 -
-4.06 -3.5 -1.38 -2.25 0.73 0.38 0.92 0.31 -8.47 -11.41 2.24 2.13 -5.31 -6.46 -5.56 -5.11
-1.31 -0.16 -1.26 -1.82 0.1 -0.26 -0.41 0.24 -0.19 0.38 0.16 0.82 0.66 0.21 0.02 0.43
-3.05 -1.27 -0.41 -0.8 -0.34 -0.52 0.68 0.36 -3.39 -2.9 0.91 0.82 0.42 0.06 1.19 0.3
-2.52 -3.64 -1.56 -1.55 -0.38 -0.23 0.81 0.54 -3.59 -2.47 1.58 2.14 -0.12 -1.6 -2.76 0.24
-2.81 -3.12 -2.56 -3.1 -3.03 -2.67 0.61 1.93 0.82 1.23 1.59 1.2 -3.93 -3.19 -3.44 -3.05
- -4.87 -2.84 -6.31 -0.81 1.1 -4.51 1.26 1.77 1.24 0.34 1.84 - -5.83 - -4.85
-2.05 -2.64 -1.05 -1.17 -0.14 -0.18 0.52 0.18 -1.26 -1.1 0.91 1.27 0.51 0.34 0.06 0.5
-10.48 -1.27 -3.58 -2.27 -2.21 0.25 0.67 1.42 -0.47 0.84 1.67 1.94 -3.8 -9.62 -10.13 -5.32
-0.44 -2.47 -1.46 -1.75 -1.2 -0.84 0.36 1.39 -0.08 0.52 0.47 0.27 0.67 -0.1 -0.77 0.53
-3.9 -1.21 -3.02 - -2.9 -4.46 0.53 1.01 -0.38 0.19 2.12 2.14 -1.53 -1.89 -3.14 -1.43
-0.86 -1.37 -0.91 -0.54 0.13 0.46 0.91 0.77 -1.64 -1.42 1.06 0.5 0.05 0.02 -0.34 -0.4
-3.61 -3.3 -0.44 -1.3 0.73 0.91 -0.79 1.67 -4.05 -3.81 2.05 1.57 -4.69 -5.79 -3.71 -
-0.98 0.88 0.01 -0.6 -0.87 -0.38 0.43 0.34 -0.5 0.6 1.0 1.03 -1.34 -1.22 -1.15 -0.96
-0.15 -0.68 -3.19 -2.28 -2.14 -0.92 0.75 1.19 -2.44 -4.74 0.92 1.33 0.57 0.12 -0.69 0.71
-0.68 -4.14 -1.62 -1.96 -0.98 -0.1 0.89 0.52 -1.97 -1.8 0.48 0.73 1.09 -0.03 -2.65 1.65
- -1.12 - - -0.03 - -0.02 0.8 1.73 1.06 -0.49 0.72 -0.24 - 0.73 0.63
-0.06 -1.12 -1.67 -1.02 -0.8 -0.46 0.66 0.02 -1.36 -1.26 1.89 2.09 -1.72 -2.19 -1.97 -1.62
-2.2 0.3 -2.82 -1.75 -1.69 -1.27 -2.08 0.79 - - -0.04 0.4 1.21 2.03 0.81 -0.03
-0.58 -1.31 -1.24 -1.45 -0.89 -0.28 0.23 0.16 -1.35 -1.51 0.26 -0.24 1.59 0.53 -0.66 1.38
- -7.37 -4.53 -6.1 0.99 -1.19 0.77 0.14 -8.87 -8.81 2.65 2.14 - - - -
-3.83 -4.3 -1.91 -1.41 -0.25 -1.27 0.8 1.03 -1.92 0.01 1.97 2.32 -9.17 -7.46 -9.2 -7.98
-1.74 0.3 - -2.06 -2.53 -0.27 -0.22 1.54 1.26 1.1 1.26 1.22 - - - -2.19
- -2.46 -2.99 -2.39 0.52 0.17 1.17 0.78 0.49 -1.35 1.88 1.81 - - - -
- - - - - - 0.92 2.2 - - 2.56 1.87 - - - -
-0.67 -4.23 -4.01 -6.93 0.12 0.39 0.97 0.7 -3.17 -2.24 1.95 2.33 - -7.43 -5.36 -
-7.81 -0.79 -3.32 -5.11 -0.68 -1.08 0.67 2.14 -4.46 -6.4 2.16 1.88 - - - -
-8.42 -5.35 -2.53 -2.08 0.15 0.55 1.57 1.24 -5.1 -3.87 1.73 2.05 - - -3.18 -
-4.64 -4.97 -3.52 -3.41 -0.25 -3.37 -1.03 0.85 1.1 0.93 -0.45 0.32 0.42 0.52 1.5 -0.14
-1.46 -3.64 -2.42 -2.72 -2.04 -1.13 -0.33 -0.22 -3.23 -2.82 0.0 -0.52 1.59 1.55 0.81 1.69
-1.37 -0.53 -1.25 -2.24 0.36 -1.29 1.48 1.12 - -2.94 1.68 -0.01 -1.66 - 0.31 0.8
-0.62 -1.15 -0.12 -0.39 0.05 0.56 0.57 0.83 -2.37 -1.22 1.15 0.54 -0.2 -0.58 -0.67 -0.03
-3.85 -0.8 -2.18 -1.53 -3.51 -1.8 -1.13 2.57 1.59 0.41 1.18 0.01 -4.76 -8.18 -2.41 -2.5
-4.83 1.04 - - -2.38 -0.1 -2.4 2.48 -4.15 -5.67 1.74 1.85 - - - -
-0.4 -2.56 -1.2 -1.54 -0.41 -0.03 1.2 1.1 -1.95 -2.15 1.5 1.03 -0.3 -0.63 -1.4 -0.12
-8.19 0.61 -3.55 -2.43 -1.21 -0.38 1.37 1.92 -4.59 -4.13 1.57 1.81 - -8.59 -5.52 -7.62
- - -3.78 -4.67 -1.76 -0.74 -0.78 1.42 - - 2.51 2.58 -4.68 - - -
-2.51 -1.46 -2.1 -1.34 0.17 -2.47 -0.87 1.23 0.16 0.89 1.27 1.48 -0.42 -1.28 -0.25 -1.12
-1.95 -3.56 -3.33 -3.09 -0.46 -2.16 -0.49 1.76 0.89 1.37 1.43 0.84 -1.57 -2.07 -2.08 -0.57
-0.73 -0.86 -0.78 -1.07 0.47 1.19 0.34 1.63 -4.31 -5.44 1.64 1.22 -3.64 -3.83 -7.19 -3.36
-0.07 -1.31 -1.26 -1.02 -0.95 -0.06 0.51 0.44 -0.65 -0.35 0.87 -0.25 0.78 0.17 -0.3 0.79
-3.81 - -1.57 -2.2 0.62 0.15 1.02 1.17 - -5.54 2.43 1.52 -4.21 -4.73 - -3.27
-1.44 -2.0 -1.64 -1.51 -0.64 -0.0 1.21 1.09 -2.92 -2.97 1.83 1.71 -1.14 -1.54 -1.84 -1.13
-0.09 -0.66 -1.36 -2.17 -0.5 -0.95 -0.17 0.53 -0.32 0.42 0.72 0.29 0.64 0.07 -0.75 1.04
-1.0 -3.99 -1.44 -2.28 -1.72 -0.84 0.27 -0.74 -3.23 -0.62 0.66 -0.84 2.1 1.25 0.37 0.43
-0.68 -3.36 -1.11 -1.95 -0.84 -0.78 0.19 0.74 -0.64 0.05 0.02 0.01 0.81 0.67 0.51 1.09
-7.68 -2.78 -2.07 -2.08 -0.94 -3.65 -2.47 1.46 -0.95 -1.03 2.61 2.23 -5.01 - - -
-0.46 -0.25 -2.28 -1.8 -0.25 -0.31 0.54 0.37 -6.21 -8.32 2.03 1.9 -0.62 -3.94 -4.5 -0.08
0.54 -0.73 -1.93 -1.97 -0.91 -1.33 -1.05 2.72 0.42 -0.18 0.8 -0.13 -2.58 -3.56 -2.63 -2.96
-2.11 0.32 -2.3 -2.9 -1.74 -1.86 -0.28 0.47 -0.56 -0.1 0.14 0.64 0.7 0.79 1.08 0.74
-2.38 -8.27 -4.6 -3.63 -2.05 -1.52 0.47 0.07 -1.85 -1.36 2.53 2.63 - - -4.88 -
-0.96 -1.15 -2.28 -2.59 -1.64 -1.1 0.2 1.03 0.01 0.24 0.01 0.21 0.92 0.84 0.17 0.6
-4.94 - -1.33 -0.37 -1.92 -1.26 1.86 1.82 -4.56 -5.5 1.85 1.5 -4.22 -2.73 - -2.02
- 0.81 -2.46 -3.72 -1.75 -0.91 0.32 2.38 0.53 1.61 0.38 -0.16 - - - -
-1.0 -0.67 -0.91 -1.25 -0.78 -0.58 0.02 -0.2 -0.26 -0.55 0.24 0.14 0.99 0.74 0.48 0.95
- -6.35 -1.31 -1.65 0.52 0.49 -0.19 0.93 -4.08 -7.19 1.96 2.51 - - - -
-3.24 -1.61 -3.1 - -5.29 -2.28 0.51 1.63 -1.84 1.24 0.93 0.44 0.3 0.15 -0.54 0.83
-1.91 -4.0 -2.71 -3.47 -1.93 -1.53 -0.61 -0.47 -2.82 -2.91 -0.87 -0.34 1.68 1.68 1.64 1.21
-5.53 -2.05 0.37 -0.7 0.37 -0.43 1.18 0.88 0.2 -3.4 2.0 0.41 -1.26 -4.53 -4.04 -0.78
-0.75 -1.33 -2.0 -2.42 -0.35 0.06 0.66 0.47 -4.27 -5.75 1.68 1.39 0.14 -0.02 -0.24 -0.08
-0.05 -1.5 -1.24 -1.02 -0.08 -1.46 -0.37 0.44 0.3 0.15 0.26 1.0 -0.19 -0.48 0.36 0.94
-5.84 0.64 -2.25 -2.14 -1.71 -1.11 0.15 2.19 0.23 1.48 0.96 0.67 - - - -4.46
-1.0 -1.4 -0.39 -0.24 0.13 -0.28 1.06 1.28 -0.15 0.66 0.73 0.2 -0.68 -1.23 -2.11 -1.03
-0.85 -0.21 -0.36 0.0 -0.38 -0.85 0.93 0.55 -1.94 -0.81 0.84 0.23 0.71 -0.49 -1.4 0.67

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.