Heatmap: Cluster_80 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.56 -7.76 - - - -9.04 -10.68 -1.03 - - - - 1.96 1.97 0.77 2.17
0.74 - -3.5 -4.49 -3.37 -3.74 -3.08 -1.13 -5.83 -6.77 -5.15 -4.26 1.81 2.05 1.36 1.64
3.6 - - - - - - 1.95 - - - - - - - -
2.34 -3.29 -4.69 -5.04 -2.8 -2.56 -0.98 0.06 -5.13 -4.48 -7.04 -7.14 1.68 1.05 -1.99 1.71
3.61 - - - - - - 1.91 - - - - - - - -
0.82 -0.54 -0.52 -0.73 -0.78 -0.61 -0.32 0.04 -0.61 -0.69 -0.61 -0.39 0.64 0.52 0.55 1.02
3.39 -2.46 -1.53 -2.71 -2.43 -1.15 1.19 -1.62 -1.41 -5.46 -2.26 -1.01 -2.31 -4.06 - -2.2
2.78 -1.92 -3.96 -3.81 -1.74 -1.82 -0.44 -0.61 -2.2 -3.97 -1.37 -3.8 0.75 0.31 -1.45 1.44
1.6 -5.05 -1.94 -1.66 -2.19 -1.43 -0.51 -0.0 -5.28 -5.22 -3.02 -2.39 1.69 0.95 0.62 1.59
-1.95 - - - - - -4.38 -4.37 - - - - 2.34 1.5 2.43 1.25
-1.06 -4.49 -7.28 -6.2 - -5.57 -7.53 -3.78 -6.69 -6.22 -5.6 -4.7 1.11 2.75 2.44 -0.05
3.08 -1.32 - - - -1.89 - 1.2 - - - - -0.97 0.75 - 1.23
3.5 0.15 - - - - - 1.59 - - -3.48 - - -3.35 - -1.38
1.68 -3.98 -5.08 -4.16 -3.65 -2.72 -1.15 -1.04 -4.28 -4.86 -4.99 -5.29 1.96 1.55 1.08 1.26
1.54 -1.68 -1.61 -2.62 -2.9 -1.88 -1.0 -0.22 - - -4.21 -3.05 1.44 1.53 1.13 1.35
1.53 -2.91 -2.32 -3.57 - - -4.58 0.17 -2.32 - - - 1.33 2.16 1.57 0.47
-0.17 - - - -3.25 - - -1.55 - - - - 2.35 1.44 1.51 2.0
2.87 - - - - -2.89 0.93 -0.7 -1.28 - -0.18 -2.29 1.06 - 0.03 0.52
1.27 -0.97 -1.23 -1.84 -2.29 -2.09 -0.49 -0.95 -1.67 -1.05 -1.97 -1.63 0.9 1.34 1.66 0.81
3.63 - - - - - - 1.85 - - - - - - - -
0.97 -2.18 - - - - -3.24 -1.24 - - - - 1.38 1.37 0.31 2.78
3.46 -6.43 - - - - -8.16 1.84 -0.99 -0.43 -5.82 - - - -3.01 -
3.77 - - - - - - 0.47 - - -0.06 - - - - -
2.38 -0.45 - - -0.8 - -0.61 0.23 - - - - 0.98 - 1.95 0.86
3.69 - -0.8 - - - 0.85 -5.07 - - - - - - - -0.61
1.63 -3.14 - - -10.77 - -9.23 0.31 -10.27 - -10.17 - 1.61 1.6 -0.07 2.18
-0.18 - -3.8 -6.12 -3.33 -5.26 -2.63 -4.36 - - -6.35 -2.46 1.85 2.65 1.51 0.81
1.99 -4.29 -5.73 -4.07 -5.6 - - 0.31 -6.15 -2.28 -4.47 -4.16 0.77 1.53 1.52 1.52
1.88 -1.29 -1.56 -0.75 -2.06 -1.82 0.16 -0.16 -1.74 -1.0 -0.44 -0.64 0.47 0.68 0.56 0.84
2.07 -2.66 -2.6 -4.44 -1.95 -4.22 -0.99 0.04 -4.19 -5.13 -3.09 -2.2 1.53 0.82 0.81 1.47
0.22 -5.44 - - - -6.85 -3.33 -1.71 - - - -6.24 1.8 0.85 - 3.19
1.05 -3.89 -5.69 -3.55 -4.58 -3.6 -2.45 -1.38 - - -7.56 -5.66 1.81 2.37 0.4 1.6
0.18 -6.37 - - -4.71 -4.88 -2.71 -1.09 - - - - 2.22 2.1 0.63 1.88
0.88 -3.61 -3.23 -3.63 -2.46 -2.7 -0.92 -0.71 -5.7 -4.91 -3.29 -2.98 1.58 1.93 1.62 1.17
3.59 - - - - - - 1.97 - - - - - - - -
3.65 - - - - - - 1.8 - - - - - - - -
-0.86 -7.26 -7.25 -5.59 -7.12 -5.96 -5.92 -2.42 - - -7.57 -5.09 1.79 2.26 2.06 1.45
0.95 -3.21 -3.84 -4.99 -3.35 -2.95 -2.4 -0.13 -3.9 -6.01 -6.97 -5.49 2.04 1.75 1.11 1.47
3.36 - - -1.29 - -0.66 - 0.24 - - - - - 0.19 1.26 -
-2.57 - - - - - - -4.26 - - - - 2.18 2.04 0.34 2.55
-0.31 -6.65 - - -7.99 - - -3.12 -5.55 -5.49 - - 2.27 2.29 1.48 1.33
1.36 -3.65 -2.59 -3.71 -1.53 -2.75 -5.72 -0.41 -2.87 -4.4 -3.78 -1.07 1.54 1.37 -0.58 2.31
1.04 -4.59 -3.19 -4.36 -2.94 -2.69 -1.07 -1.03 - -11.07 -4.66 -3.27 1.85 1.72 1.54 1.35
0.15 -3.26 - - -8.19 -5.77 -6.67 -2.23 -5.16 -5.1 -3.33 -3.44 2.17 2.17 1.29 1.52
2.98 -9.68 -3.9 -3.46 -2.81 -2.49 -0.3 -2.35 -5.26 -3.88 -5.49 -3.95 1.15 1.26 -0.87 0.33
1.89 - - - - - - -0.91 - - - - - 1.99 - 2.96
0.95 -5.84 -4.18 -3.85 -3.88 -2.85 -2.67 -1.11 -8.2 -8.14 -6.29 -4.96 1.63 1.48 1.15 2.3
1.21 -2.83 - -3.35 -3.7 -2.75 -3.82 -0.0 - - - -4.46 1.98 1.26 -1.13 2.41
3.3 -1.14 - 1.29 - - - 1.69 - - - - - - - -
3.58 - - - - - - 0.59 - - - - - 1.36 - -
-4.08 - -8.86 -7.53 -8.73 - -9.53 -5.25 - - - - 1.85 2.85 1.57 1.08
3.04 -2.47 -3.18 -2.37 -0.47 -0.08 -1.09 -0.2 -4.93 -4.29 -0.45 0.8 -1.13 -1.1 -1.03 -1.72
0.39 - - - - - - -0.97 - - - - 2.74 2.0 - 1.81
1.67 -4.98 -2.25 -2.75 -3.31 -4.59 -2.34 -0.59 -2.51 -4.16 -1.46 -0.73 1.43 1.4 1.05 1.5
3.04 -1.95 - - - - -6.73 1.0 - - - - 0.9 0.83 0.42 -0.94

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.