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Heatmap: Cluster_254 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-2.07 -4.29 -0.95 -0.45 -0.41 0.3 -1.3 -2.01 -5.22 -2.71 -1.42 -2.07 1.56 1.7 0.8 1.63
-5.76 - -8.75 -10.41 -5.76 -5.47 -5.51 -6.61 - - - - 1.32 2.11 2.85 0.94
- - 0.9 -0.88 1.41 1.81 2.46 -5.47 - - - -0.23 - - 0.08 -
- - 0.5 1.37 1.04 2.33 -1.92 -1.49 0.89 1.15 -2.47 -4.26 - - - -
-5.16 -4.91 0.64 0.78 1.54 2.23 0.63 -2.91 0.03 -1.01 0.26 -1.23 - - -2.07 -
-5.43 - -0.3 -0.16 2.11 1.41 1.58 -0.15 - - -0.5 1.35 -4.0 -6.1 - -4.13
- - 0.91 1.74 1.44 2.09 -1.41 0.55 - - -2.88 - -1.64 -1.73 -0.66 -0.76
- - 0.45 -0.18 2.19 1.96 0.97 -5.88 - - - 1.74 - - - -
- - 0.61 -0.04 2.3 2.18 -0.21 -8.3 -4.12 -5.06 0.88 0.11 - -4.87 -2.8 -
-4.76 -2.98 0.72 1.52 1.1 1.85 -4.46 -0.32 0.5 1.55 -3.3 -2.47 - - -3.26 -7.36
-2.83 -2.35 -2.0 -0.56 0.51 0.68 0.51 -2.84 -4.32 -5.48 -1.42 -1.48 1.76 1.52 -0.26 1.17
- - -0.04 0.36 2.14 2.02 1.59 -1.22 - - -0.83 -0.35 - - -1.61 -2.71
-2.51 -1.89 -0.23 0.06 1.26 1.22 0.24 0.13 - - -5.53 -1.83 1.13 0.63 -0.0 0.71
-3.28 -6.02 -0.02 -0.06 1.46 1.7 -1.0 -1.33 -2.79 -1.97 0.38 -1.74 -0.74 -1.15 1.92 -2.29
- - 0.21 1.26 2.48 2.14 1.08 -6.91 - - -2.57 -2.67 - - - -
0.01 -2.19 0.39 0.87 1.78 1.48 0.72 -1.68 -0.66 -0.77 -1.15 -0.04 -0.5 -3.6 - -
-2.31 - -0.3 0.23 2.19 2.27 1.41 -3.7 -4.86 -4.8 -0.88 -0.7 -3.93 -3.8 -2.54 -2.64
-0.82 -3.66 0.7 0.85 0.9 2.11 -0.15 -2.81 1.11 0.11 -0.82 -0.59 -3.95 -6.04 - -2.98
- - 1.7 0.35 2.85 1.25 -1.39 - - - - - - - 0.59 -
-1.1 -8.57 0.57 0.71 1.34 1.05 1.29 0.21 -7.48 -7.42 -4.06 -2.49 0.48 -0.96 -5.16 1.01
-0.47 -0.98 0.02 -0.01 0.45 0.34 -0.02 -0.68 -0.83 -1.14 -0.25 -0.21 0.87 0.53 0.41 0.25
- - -3.59 -2.26 1.29 1.02 1.32 -1.01 - - -1.33 -2.02 1.12 - - 2.44
- -3.72 0.24 0.96 1.04 1.98 0.83 -3.76 0.52 0.89 -0.39 -0.17 - - - -
- -1.4 0.27 1.19 - 2.05 - -2.19 0.87 1.67 -1.62 -0.72 - -1.51 0.56 -
-1.07 1.47 0.51 0.34 1.36 1.93 0.3 -0.25 -2.09 -0.68 -2.13 -3.24 - - -1.23 -
- - 1.02 1.2 2.35 1.15 1.1 0.19 -1.89 -0.92 -4.29 -2.29 - -5.77 - -
-3.89 - 0.42 0.53 1.67 1.6 1.8 -1.04 - - -2.4 -0.01 -0.44 -1.12 - -0.8
-8.56 -9.9 -0.6 0.13 2.34 2.17 1.74 -1.06 -4.56 -7.16 -1.57 -1.09 - - - -7.58
- -2.86 0.09 -1.9 1.41 1.69 2.58 -3.33 - - -2.55 1.25 - - - -
-1.4 -0.83 -0.2 0.07 0.87 0.62 -0.02 -0.14 -2.95 -3.61 -1.91 -4.05 1.44 0.44 -0.15 1.24
-1.11 -0.86 -0.95 -0.77 0.5 0.69 -0.88 -0.75 -1.97 -3.41 0.12 -1.98 1.1 0.8 0.27 1.56
-1.99 -2.91 1.15 1.05 2.18 1.86 1.38 -6.02 - - -2.71 -1.81 - -3.55 - -
-0.58 -0.09 -0.46 -1.25 0.34 0.43 -0.08 -1.2 -1.86 -1.81 -0.76 -1.32 0.84 0.9 1.27 0.71
- -0.82 - -0.67 1.89 1.78 -0.71 -3.75 - - - - - 0.77 1.85 0.75
-4.1 -0.39 -0.3 1.2 1.53 2.56 -0.16 -3.95 - -2.67 -0.05 -1.15 - - -0.41 -
- -2.83 -0.51 -1.98 1.21 1.78 1.15 -2.79 0.06 - -2.66 -1.18 1.41 0.09 -0.42 -0.52
- - -0.82 -0.29 2.88 1.66 1.3 -4.39 - -3.61 -0.4 -0.43 - - - -
- - -1.76 -1.42 2.54 2.21 1.82 - - - -1.09 -0.19 - - - -
-1.83 - 0.45 1.46 1.75 2.42 1.13 -5.13 - - -2.1 -1.49 - -7.59 -4.52 -4.62
-4.48 - 0.22 0.65 1.49 2.26 1.31 -1.88 -3.7 -2.64 -0.14 0.05 -3.36 -2.13 - -1.48
0.25 -0.86 0.21 0.64 0.89 0.93 0.37 -0.07 -0.51 -0.68 0.41 0.27 -0.94 -1.49 -2.1 -0.81
-1.0 0.05 0.41 0.79 0.44 0.88 -0.17 0.4 -0.1 0.56 -0.52 -0.32 -0.98 -0.77 -1.14 -0.85
-6.43 -1.22 0.42 1.56 2.03 2.08 1.34 -7.31 -3.52 - -3.42 -3.53 - - - -2.87
- - -0.35 1.3 2.05 1.91 1.46 -4.45 - - 0.33 -0.32 - - - -
- - -2.11 -3.29 -1.42 -1.25 -1.74 -2.05 - - - - 2.22 1.97 1.56 1.49
-1.72 -2.16 -0.76 0.25 1.04 0.78 -1.88 -2.88 -1.94 -3.05 -4.01 - 1.57 -0.04 0.22 1.98
-3.42 -5.04 0.59 0.61 0.92 0.95 0.84 -0.33 -0.29 -0.71 -0.01 -0.89 0.36 -0.8 -0.76 0.04
- -3.28 0.55 1.19 1.95 1.98 0.69 - 0.91 -3.68 -1.64 -3.75 - - -1.42 -
-5.21 -0.39 -1.21 -1.3 1.19 2.26 1.24 0.84 -5.29 -5.82 0.69 0.36 -4.52 -4.3 -3.55 -4.65
-0.3 -1.29 0.64 1.17 0.63 1.02 -0.36 0.05 0.63 0.72 -0.55 -1.08 -1.42 -2.21 -1.81 -1.6
-1.29 -2.04 0.12 0.37 1.66 2.32 1.73 -2.07 - - -1.38 -0.68 -2.14 - - -
-4.49 -4.26 0.21 1.42 0.74 1.97 -1.72 -1.42 1.27 1.27 -2.24 -0.58 - - -3.75 -4.84
-3.63 -2.07 0.6 0.13 1.62 1.18 1.75 -2.29 - -3.15 -0.52 0.78 -1.88 -2.98 - 0.32
- -3.44 1.4 -0.23 2.15 2.29 0.93 -3.08 -2.31 - -3.22 -1.32 - -3.07 - -2.1
-5.38 -5.86 0.85 -0.27 1.38 1.81 0.0 -0.09 -2.47 -5.32 -0.06 -0.37 0.53 -0.66 -2.46 0.1

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.