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Heatmap: Cluster_302 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.23 -0.48 -2.08 -2.27 -1.45 -1.09 0.26 0.34 -0.89 -0.9 -0.07 0.26 0.89 0.62 0.46 1.24
1.09 -0.19 -1.08 -1.07 -0.52 -0.62 0.1 -0.1 0.08 0.39 1.0 0.29 -0.33 -0.67 -0.75 0.11
0.44 -1.15 -1.4 -1.14 -0.83 -0.31 0.4 -0.45 -0.38 -0.17 0.4 -0.34 0.94 0.46 0.19 0.79
1.43 0.14 -0.99 -0.43 -0.07 -0.32 1.08 0.25 -0.79 -0.63 0.28 1.01 -1.65 -1.43 -1.45 -1.29
1.24 -1.38 -0.5 -0.84 -0.48 -0.15 0.39 -0.48 -2.83 -2.29 0.45 0.72 0.63 0.37 -0.3 0.4
1.09 0.05 -0.55 -1.01 -0.05 -0.31 0.58 0.0 -2.08 -2.19 -0.55 -0.1 0.72 0.54 -0.31 0.49
1.14 -3.17 -1.99 -1.67 -0.9 -0.55 0.48 1.09 -4.45 -5.02 0.86 0.05 0.71 0.0 -0.08 0.91
0.08 -0.82 -3.61 -4.24 -2.94 -3.18 0.59 -0.02 0.07 -1.38 0.25 0.39 1.12 0.97 1.1 0.37
-0.19 -1.06 -3.12 -3.16 -2.89 -2.1 0.0 0.59 -1.26 -1.15 0.14 -0.09 1.24 1.08 0.44 1.48
1.67 -3.21 -0.94 -0.06 0.54 1.08 1.42 0.13 -2.97 -2.64 0.64 0.07 -1.84 -1.51 -3.4 -1.87
0.53 0.18 -3.91 -3.99 -1.87 -4.36 0.85 0.09 -0.82 -1.58 -0.12 0.4 1.05 0.69 -0.43 1.34
-0.15 -1.23 -2.77 -2.73 -2.0 -1.14 0.25 -0.42 -3.5 -3.5 -0.32 -0.28 1.49 1.44 0.6 1.53
0.82 -1.01 -1.09 -0.91 -0.71 -0.07 0.5 -0.81 -1.85 -1.96 -0.98 -0.0 1.14 0.69 -0.02 1.23
0.64 0.3 -0.57 -0.46 -0.59 -0.92 0.5 0.05 0.17 -0.59 -0.19 -0.35 -0.22 0.09 0.4 0.55
0.69 -0.66 -1.22 -1.35 -1.14 -0.3 -0.01 0.12 -3.29 -2.95 -0.25 -0.23 1.17 0.34 -0.03 1.66
1.19 -3.3 -1.87 -2.68 -1.79 -0.82 1.03 0.56 -0.21 0.04 0.74 0.76 0.06 0.57 -3.49 -0.07
-2.48 -5.85 - -6.57 -4.77 -5.35 -1.87 -4.69 - -5.27 -5.65 -4.02 2.33 1.89 1.47 1.92
0.09 -0.3 -1.85 -1.93 -1.4 -1.71 -0.12 -0.54 -0.75 -1.31 -0.76 -1.06 1.45 1.14 0.37 1.59
-1.49 -1.56 -4.49 -4.67 -2.8 -3.14 -1.54 -2.29 -1.81 -3.63 -2.44 -1.87 1.29 1.74 2.36 1.43
1.55 0.73 -0.03 -0.45 0.32 0.42 1.59 0.4 0.39 -1.67 -1.09 -0.52 - - - -5.8
0.81 -0.44 -1.29 -1.79 -0.69 -0.35 -0.12 -0.61 -0.12 0.15 0.79 0.01 0.43 0.22 0.26 0.44
1.05 0.36 -0.32 -0.2 -0.38 -0.67 0.79 0.16 -0.1 -0.45 0.21 0.56 -0.68 -0.92 -0.69 -0.58
0.34 -1.25 -1.12 -1.27 -0.89 -0.95 0.45 0.15 -0.84 0.1 0.43 -0.1 0.81 0.39 -0.21 1.05
0.28 - -2.89 -2.84 -2.13 -2.8 -0.1 -0.87 -1.0 -1.88 -0.72 -0.36 1.41 1.15 1.31 1.66
0.26 -1.37 - - -1.65 -2.06 0.28 -1.35 -2.54 -1.53 0.11 -0.67 2.08 0.56 0.64 1.46
0.72 -0.62 -1.12 -1.68 -1.7 -1.28 0.48 0.35 -0.85 -0.29 0.27 0.06 0.49 0.63 0.78 0.31
0.62 -1.65 -1.34 -1.9 -0.92 -0.61 0.26 0.13 -6.51 -5.45 -0.43 -1.27 1.34 1.09 0.56 1.43
0.64 -0.55 -1.66 -1.3 -1.53 -0.84 0.44 -0.25 -0.47 0.25 0.77 -0.83 0.58 0.25 -0.24 1.15
0.55 -1.66 -1.44 -1.35 -1.17 -0.61 0.12 -0.67 -0.84 0.02 0.34 -1.28 1.11 0.74 0.5 1.11
-0.54 -2.64 -4.41 -2.66 -2.49 -2.23 -0.09 -0.9 - - -2.72 -0.9 1.33 1.57 1.58 1.97
0.85 -1.11 -0.65 -2.01 -0.33 -0.26 0.33 -0.29 -2.24 -2.18 -1.39 -1.09 0.53 0.59 1.24 1.35
1.09 -0.71 -0.78 -1.02 -0.5 -0.53 0.05 0.12 0.1 0.41 0.8 -0.03 -0.02 -0.35 -0.73 0.23
0.62 -0.25 -0.95 -0.87 -0.94 -1.14 0.39 0.05 -1.16 -1.95 0.06 0.32 0.76 0.45 0.21 1.02
1.16 -0.3 -0.96 -1.91 -0.82 -0.71 1.12 -0.35 -3.9 -2.29 -0.49 0.59 0.33 0.76 0.38 0.37
0.67 -0.68 -4.85 -2.93 -3.71 -3.3 -0.03 0.38 -1.94 -0.96 0.69 0.28 1.19 0.75 0.04 1.36
0.37 0.29 -1.58 -1.36 -1.34 -0.96 0.4 -0.28 -0.17 -0.08 -0.2 -0.24 0.47 0.69 0.09 1.05
-0.17 -2.26 -1.49 -1.6 -1.53 -1.35 0.03 -0.36 -0.94 -0.77 -0.49 -0.63 1.34 1.22 1.12 1.12
0.64 0.42 -1.3 -1.67 -1.57 -1.06 0.58 0.09 -0.1 -0.12 0.1 -0.27 0.16 0.22 0.51 0.62
0.56 0.01 -0.81 -0.47 -0.57 -0.45 0.4 0.65 -0.0 0.16 0.48 0.25 -0.22 -0.7 -0.72 0.2
0.53 -2.38 -2.24 -1.77 -1.97 -0.02 -0.1 -0.7 -1.68 -1.48 -1.2 -0.49 1.44 1.01 1.03 1.32
0.79 -0.33 -1.43 -1.8 -1.07 -0.79 -0.15 -0.86 -0.54 -0.23 0.44 0.17 0.74 0.62 0.38 0.82
1.0 -0.77 -1.55 -0.68 -0.78 -0.57 0.26 -0.28 -0.55 0.13 0.76 -0.14 0.37 -0.38 -0.26 0.92
0.69 -1.46 -2.02 -2.32 -1.37 -0.53 -0.13 -0.59 -0.42 -0.32 0.58 -0.26 1.05 0.65 0.33 1.1
0.74 0.08 -1.42 -2.14 -0.73 -0.66 -0.08 -0.21 -0.76 -0.46 0.44 0.2 0.57 0.64 0.46 0.45
0.24 -0.04 -1.26 -1.77 -0.89 -0.69 0.57 -0.4 -0.37 -0.36 0.23 0.04 0.69 0.56 0.53 0.54
0.14 -0.59 -0.79 -1.48 -1.17 -1.64 -0.19 -0.65 -1.35 -1.39 -0.57 -0.31 1.37 0.74 0.18 1.76
0.64 -0.26 -0.73 -0.85 -0.49 -0.5 0.42 0.05 -0.12 0.15 0.68 0.09 0.17 -0.33 -0.51 0.43
0.77 -0.26 -1.87 -1.46 -1.2 -1.02 0.65 0.56 -4.33 -2.32 -0.06 -0.19 0.97 0.97 -0.42 1.08
0.36 -1.55 -0.97 -0.96 -0.77 -0.35 0.43 -0.2 -0.29 0.03 0.13 -0.24 0.96 0.21 -0.4 1.08
1.15 -0.51 -0.84 -0.7 0.2 0.35 1.44 -0.12 -0.71 -0.92 0.09 -0.28 -0.51 -0.76 -0.5 -0.3
-1.64 -8.19 -8.66 - -6.2 -7.11 -1.71 -2.32 -3.77 -6.44 -2.5 -2.19 2.37 2.09 1.14 1.6
1.67 0.05 -1.22 -1.37 -0.91 0.34 0.65 0.89 -1.79 -1.78 -0.29 0.12 0.01 -0.59 -1.12 0.14
1.04 -0.15 -0.95 -1.26 -0.72 -0.74 0.71 0.5 -3.76 -3.18 0.18 0.8 0.76 -0.16 -1.04 0.78
0.56 -0.52 -1.75 -1.3 -0.82 -0.33 0.4 -0.23 -2.05 -0.92 -0.35 -0.15 0.96 0.82 0.31 1.12
-0.08 -5.01 -2.75 -3.08 -2.19 -2.09 -0.11 -1.57 - - -2.75 -0.83 1.96 1.63 0.65 1.92
1.39 -2.45 -2.93 -2.15 -0.53 -0.17 1.4 1.08 -2.26 -4.52 0.47 0.32 0.39 -0.45 -1.84 0.38
-0.08 -1.3 -4.1 -4.63 -3.64 -2.57 -0.54 0.27 -3.0 -2.99 -0.37 -0.21 1.58 1.73 0.76 1.32
0.46 -0.83 -3.56 -2.68 -1.54 -1.13 0.04 -0.06 -1.58 -0.94 0.45 0.1 1.48 0.62 -0.41 1.4
1.03 -0.2 -0.83 -1.04 -0.08 -0.3 0.72 -0.19 -6.05 -6.21 -0.61 0.0 0.98 0.65 -0.22 0.75
0.3 -0.3 -2.81 - -2.69 - -1.03 0.61 - -3.14 0.22 -0.89 1.68 0.44 1.39 1.41

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.