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Heatmap: Cluster_19 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - - - - - - -3.45 - - - - 2.75 2.9 - 0.79
- - - - - - - 3.66 0.63 - - - - 0.87 - -
- - - - - - - 4.0 - - - - - - - -
0.68 -7.06 -0.81 -1.62 -0.66 0.28 0.36 1.2 -2.51 -6.03 -1.28 -0.37 0.89 1.05 -0.02 0.82
1.63 - - - - - - - - - - - - 3.69 - -
1.04 -0.58 -0.42 -1.19 0.24 -0.27 0.76 0.48 -1.76 -2.54 -0.47 -0.16 0.5 0.39 0.25 0.0
-3.24 - - - - - - -0.19 -1.87 - - - 2.27 2.07 - 2.51
-0.66 -1.21 -5.89 -5.57 -0.06 1.05 0.73 2.53 - -5.28 0.51 -1.44 -0.45 -1.47 -2.0 0.36
3.29 - -0.12 - -0.58 1.07 - -1.56 - - - - 0.21 - - 0.08
-1.6 -1.11 -0.78 -1.79 0.32 -0.35 -1.87 2.6 1.09 1.09 -4.23 -4.01 -1.37 -1.67 -0.89 -1.45
0.63 -4.21 -6.13 -5.63 -6.42 -5.08 -7.8 0.53 - - -7.47 -4.87 2.18 1.95 0.04 1.78
1.96 - - - - - - 3.6 - - - - - - - -
0.02 -4.46 - - - - - -2.39 - - - - 2.29 2.18 0.28 2.03
3.08 -2.47 - -3.83 - - -7.65 2.84 - - - - - - -3.09 -
- - - - - - - 4.0 - - - - - - - -
4.0 - - - - - - - - - - - - - - -
1.02 1.38 -1.16 -1.57 -2.35 -0.71 -3.16 2.84 - - -0.82 -0.61 -1.57 -0.67 - -1.69
- - -4.31 -3.98 -2.59 - -2.66 0.1 - - - -2.75 2.25 0.68 2.04 1.94
4.0 -6.2 -8.48 -6.72 -9.94 -6.62 -8.15 -9.16 - -9.4 - - - - - -
- - - - - - - -0.39 - - - - - - 3.93 -
2.85 -1.73 -2.59 -1.85 -3.05 0.11 -3.27 0.77 - - - - 0.54 0.89 -1.29 0.42
-1.57 - - - - 0.25 -0.4 2.28 - - - - 1.18 1.09 2.16 -
3.3 -2.73 -1.19 -1.48 -0.1 -0.26 -0.94 -1.04 -4.23 - -3.4 -2.24 -0.49 -1.41 -1.93 -0.52
0.74 - - - - - - 1.28 - - - - 0.84 2.61 -1.0 1.81
- - - - - - - 2.46 - - - - - 3.39 - -
4.0 - - - - - - - - - - - - - - -
- - - - - - - 4.0 - - - - - - - -
4.0 - - - - - - - - - - - - - - -
0.34 -3.67 - - - - -0.96 -0.04 - - - - -1.18 1.89 0.79 2.86
- - - - - - - 4.0 - - - - - - - -
0.46 -3.15 -3.4 -3.08 -2.57 -2.1 -1.89 -0.18 -1.84 -3.16 -4.86 -3.09 2.28 1.32 0.49 1.79
- - - - - - - 1.56 - - - - - - - 3.71
4.0 -10.3 - - - - - - - - - - - - - -
0.0 -3.18 -2.26 -2.2 -1.68 -0.71 -0.66 0.09 -3.04 -2.37 -0.39 -1.07 1.88 0.83 0.15 1.89
-0.01 - - - - - - -0.52 - - - - 0.89 1.47 1.54 2.76
0.97 -1.54 -1.5 -1.66 -2.01 -2.06 -1.54 -0.97 -0.78 0.06 -1.64 -2.77 0.66 1.56 - 2.34
1.17 1.3 -7.22 - - - -4.72 3.49 - - -6.55 -6.66 - - - -
-0.06 -2.94 -4.77 -1.85 -3.63 -4.81 -4.44 -0.98 - - - - 2.71 1.23 0.45 1.89
- - - - - - - 0.86 - - - - - - 3.83 -
-1.05 -1.43 -4.14 - -6.59 - -4.81 3.08 1.42 -0.29 - -6.16 0.32 -0.58 -2.25 -0.03
1.81 -1.04 -1.14 -1.08 -0.95 -0.83 -0.45 -0.04 -3.09 -2.76 -0.5 -0.09 1.09 0.5 0.21 0.76
1.76 0.24 -1.95 -2.31 -1.92 -1.94 0.12 -0.16 -0.53 -0.8 -0.21 -0.42 0.71 0.35 -0.0 0.76
0.77 0.08 -0.76 -0.4 -0.47 -0.72 -0.28 1.39 0.15 0.28 -0.37 -0.48 -0.13 -0.57 -0.41 -0.06
2.76 -1.74 -4.22 -3.6 -1.45 -2.07 -1.99 1.14 -0.33 0.58 -1.48 -1.8 -0.43 -0.5 -0.8 -0.35
- - - - - - - 1.76 - - - - - 3.66 - -
2.85 -1.72 -1.78 - - -1.23 - 0.86 - - -1.12 -0.22 - -0.96 0.11 1.6
1.7 -2.63 -1.78 -3.27 -0.93 -1.03 -0.42 1.16 -1.25 -0.35 -0.86 0.23 0.49 0.01 -1.01 1.23
0.12 -1.08 -1.44 -1.33 -0.69 -0.49 0.6 1.01 0.54 0.27 0.28 -0.51 0.24 -0.11 0.05 0.12
0.58 0.11 -1.89 -2.58 -0.79 -1.02 -0.01 1.43 -3.17 -3.11 -0.24 0.2 0.73 0.64 -0.26 0.96
-2.92 - - - - - - - - - - - 3.69 - - 1.57
- - - - - - - 4.0 - - - - - - - -
0.51 -1.32 - - - - -1.9 -1.23 - - - - 2.1 -0.82 - 3.11
- -3.75 - - - - - 3.19 2.11 1.29 - - - - - -
2.84 0.61 - - -0.98 -1.15 -0.37 -0.16 - - -3.04 -4.14 -0.46 -0.29 1.19 -0.58
1.52 0.38 -8.35 - - - -8.02 1.09 -1.24 -1.87 -9.28 -7.06 1.58 1.62 -0.43 1.12
-2.3 - - - - - - - - - - - 3.68 1.56 - -
2.88 - -0.4 -0.87 -2.08 0.09 -3.88 2.58 - - - - - - - -
2.36 - - - - - - 3.16 - - - - - 0.95 - -
1.16 -1.63 -7.24 -6.91 -7.1 -9.28 -5.82 1.5 - -7.62 - - 1.85 1.63 0.22 1.43
2.61 - -0.53 -1.68 -0.48 -1.43 -1.05 1.21 -8.45 -7.38 -3.22 -1.36 0.31 0.1 -0.19 0.41
- - - - - - - -5.28 - - - - 3.05 0.84 0.32 2.22
0.05 - - - - - - - - - - - - - 3.9 -
0.81 -0.71 -1.35 -0.06 -1.07 -1.2 0.82 0.84 -3.4 -3.47 -0.36 -0.52 1.2 1.01 -1.08 0.46
- - - - - - - 4.0 - - - - - - - -
- - - - - - - 4.0 - - - - - - - -
4.0 - - - - - - - - - - - - - - -
0.92 -0.55 -0.3 -0.86 0.24 -0.16 -0.01 0.5 -0.26 0.15 -0.5 0.12 0.08 0.03 -0.33 -0.04
0.7 -2.71 -5.77 -5.44 -4.05 -4.8 -4.85 -0.45 -4.2 -4.14 - -5.21 2.4 1.71 0.35 1.75
0.31 -1.66 0.05 -0.3 0.27 0.55 0.24 0.97 -0.1 0.23 0.48 -0.11 -0.17 -0.91 -1.4 -0.82
-0.7 - - - - - - - - - - - 1.23 2.14 - 3.11
-1.72 -1.87 -1.97 -2.65 -1.52 -1.02 -0.64 2.69 -0.84 -0.19 1.72 -0.84 -0.06 -1.57 -1.08 -
4.0 - - - - - - - - - - - - - - -
- - - - - - - 4.0 - - - - - - - -
3.19 0.37 -2.44 -1.74 -1.13 -1.03 -0.31 -1.69 -0.44 -0.74 -0.31 -0.44 -4.16 -5.45 -5.6 -3.82
4.0 - - - - - - - - - - - - - - -
3.66 -6.96 - - - - -7.07 1.73 - - - - - - - -
3.78 -2.05 -4.95 -3.39 - -3.4 -5.2 -3.04 -5.96 -5.9 - -5.97 -1.62 -0.63 -0.84 -4.74
1.55 0.68 -0.5 -0.72 0.06 -1.03 1.46 1.89 - - -0.24 -0.5 -2.83 -2.92 -2.85 -2.37
0.43 -2.17 -8.78 - -4.84 -5.11 -4.64 0.31 - -6.56 -0.94 -1.73 1.94 2.18 0.09 1.5
4.0 -9.51 -10.3 -9.96 -9.68 -10.65 - -12.28 - - - - - - - -
3.41 -1.01 -1.96 -2.62 -2.84 -1.66 -2.46 -0.65 -0.11 -0.13 -1.94 -2.37 -2.05 -1.57 - -1.59
-0.46 -1.83 -1.86 -1.86 -1.31 -0.61 0.01 0.76 -0.24 -0.15 -0.39 -1.4 1.3 1.16 -0.12 1.11
1.53 -1.16 -2.04 -1.89 -1.9 -1.12 -0.01 -0.52 -1.94 -0.96 -1.6 -2.1 1.28 0.42 0.03 1.85
- - - - - - - 4.0 - - - - - - - -
0.62 -4.47 -1.33 -1.3 -1.46 -1.21 -0.91 0.39 - - -3.95 -2.83 1.85 1.23 0.57 1.74
4.0 - - - - - - - - - - - - - - -
-2.38 -2.54 -0.49 -0.85 -2.74 -1.9 -2.29 2.8 2.01 1.05 -3.9 -3.12 -4.49 -2.12 -2.51 -4.03
1.07 -0.31 -2.29 -3.34 -1.67 -1.57 -0.19 -1.16 -1.89 -1.15 -0.94 -1.19 1.42 1.01 0.8 1.44
- - - - - - - -1.7 - - - - - - 3.97 -
-1.0 -3.0 -2.93 -2.98 -2.28 -1.93 -0.84 -0.2 -5.27 -6.64 -2.14 -1.73 1.81 1.75 1.36 1.68
-1.38 0.52 - - - - - 3.11 - - - - - -0.97 2.32 -
-0.93 -2.7 -3.69 - - - -1.25 1.48 -5.73 - - - 1.36 1.1 1.65 2.06
- - - - - - - 0.97 - - - - - - 3.81 -
2.15 -1.5 -4.74 -2.6 -1.14 -0.42 -0.58 1.42 -2.17 -2.52 -0.27 -0.48 0.17 0.44 -1.84 0.82
- - - - - - - 1.21 - - - - - - 3.77 -
1.15 -4.5 - - - - - 0.71 - - - -5.02 2.22 1.75 -1.68 1.89
- - - - - - - 2.3 - - - - - 3.47 - -
- - - - - - - 0.86 - - - - - 3.83 - -
- - - - - - - 4.0 - - - - - - - -
- - - - - - - -0.05 - - - - - - 3.91 -
3.82 -4.71 -3.12 -2.6 -1.91 -1.15 -1.77 -8.46 - - -1.69 -2.34 - -8.58 -6.51 -6.61

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.