Heatmap: Cluster_1 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-6.24 3.71 -2.01 -2.51 -0.29 -1.66 -3.47 -2.31 -1.9 -2.78 -4.39 -2.85 -3.33 -3.65 -3.58 -2.67
- 3.57 0.37 -3.4 -0.34 -5.09 -3.19 0.73 -5.47 -5.41 - -3.16 - - - -
-4.86 3.87 -5.99 -5.65 -0.58 -3.43 -1.08 - - - - - - -5.18 - -
- 3.72 -3.46 -0.81 -1.75 -0.91 -4.14 - - - - - -1.55 - - -0.09
- 3.84 -0.93 -1.12 -2.54 -2.29 -4.93 -4.91 - - -3.59 -2.69 - - - -
-0.24 3.53 0.66 - 0.78 - - -1.61 - - - - - - - -
- 3.6 0.59 0.35 0.11 - - - - - - - - - - -
-1.71 3.61 0.26 0.18 -1.93 -3.1 -2.41 -4.14 -3.48 - -1.39 -3.5 - - - -
- 3.94 - -0.74 - - - - - - - - - - - -
- 3.91 - - -2.99 - - -5.8 - - - - - - -0.23 -
1.37 3.62 -1.06 - - - -1.73 - -1.47 - - - - - - -
- 3.98 -6.19 -2.31 -9.52 -8.69 -10.32 - - - -8.99 - - - -6.77 -
-1.91 3.71 0.55 - - -1.06 - - - - - -0.44 - - - -
-0.5 3.62 -0.81 -3.19 -1.58 -2.95 -6.45 -3.8 -3.95 -6.09 -6.43 -5.13 -0.6 -1.17 -6.14 -0.87
- 3.87 -0.8 -1.82 -1.39 -3.51 - - - -3.82 - - - - - -
-2.09 3.5 0.28 -0.98 - -1.93 -1.98 -3.22 -2.33 - - -2.34 - -0.49 -0.0 -
- 3.93 - -3.51 - -2.88 - - - - - - - - -0.97 -
- 3.91 - - -0.12 - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
-1.66 3.63 -0.98 -0.72 0.57 -1.82 - -7.58 -5.78 -3.73 -4.68 -2.98 - -5.62 -3.55 -4.64
- 3.69 -1.77 -1.65 -0.13 -2.01 -0.89 -1.38 - - -2.77 -1.88 - - - -
-0.55 1.99 -0.58 -0.62 -0.9 -1.96 -1.59 -0.92 -2.65 -2.05 -1.37 -3.31 1.2 1.13 0.12 0.92
-2.34 2.87 -1.9 -0.75 -2.41 -2.49 -4.63 -3.64 -5.97 - - - 1.64 0.38 -0.33 0.95
- 3.88 - - - - - - - - - - - - 0.38 -
-4.66 3.89 -2.94 -0.82 -4.9 -1.64 -5.38 -6.88 - - - -5.47 - -6.21 - -
-4.1 3.61 -0.68 -2.15 -0.63 -0.44 -1.06 -3.35 -1.3 -3.68 -2.87 -2.98 -5.21 -3.98 -4.23 -5.33
- 3.78 - 1.17 - - - - - - - - - - - -
- 3.77 -0.03 - 0.1 - -2.7 -3.09 - - - - - - - -
-0.92 3.55 -2.85 0.49 - -1.29 -1.52 - - - -2.15 - -0.94 -0.45 - -
- 3.8 -3.13 -2.22 -1.0 -1.33 - - - - - - - - -0.24 -
-2.6 3.58 -1.69 -2.34 -1.98 -1.71 -1.78 -3.57 - - - - - 0.44 -0.81 -0.91
-3.04 3.91 - -1.02 -1.58 - - -6.39 - - - - - - - -
- 3.31 -1.25 -0.91 0.39 -1.54 -0.8 -3.16 -2.26 -0.61 -0.16 -0.95 - - -0.94 -
-5.05 3.42 -2.94 -2.6 -0.51 -2.83 0.22 -3.6 -0.52 -0.04 -0.78 -0.65 - - - -
- 3.78 - - - - - - -2.81 - - - - - 1.06 -
- 3.62 -1.56 -0.23 - - - - - - - - - - 1.32 -
- 3.14 - 1.29 - - - - - - - - - - 2.25 -
-1.74 3.19 -2.5 - 0.33 -1.94 -2.17 -6.16 - - - -1.92 - 0.32 -0.61 1.29
-0.31 2.97 -0.24 0.18 -1.65 -1.9 -1.87 -0.63 -1.27 -1.37 -0.62 -2.22 -0.5 -1.12 -1.81 -0.39
-2.59 3.63 -0.07 -0.43 -0.95 -0.35 -3.36 -7.93 -3.49 -4.65 -3.62 -3.14 - - - -
-0.77 3.64 0.37 -0.07 -1.1 - - -3.31 - - - -2.63 - - - -
-0.97 3.66 -0.54 -0.21 -2.22 -0.02 -5.61 -6.59 -4.36 - - - - -4.12 - -
- 3.81 1.0 - - - - - - - - - - - - -
-2.6 3.9 -3.93 -2.58 - - -4.62 -3.65 - - - -3.31 -2.04 - - -2.16
- 3.91 - -1.55 - -1.92 - - -1.3 - - - - - - -
- 3.5 0.13 -0.12 -0.74 0.09 - -1.41 - - - - - - - -0.67
- 3.94 - - -4.0 -0.78 - - - - - - - - - -
-0.04 3.65 -0.69 -1.11 -2.32 -0.49 -2.21 -3.75 - - -3.44 -3.55 - -5.63 - -
- 3.41 -0.76 -0.11 -1.28 -1.4 -3.53 -5.23 -3.22 -4.17 - -4.24 0.22 -0.88 -0.97 -1.07
- 3.75 -1.68 -2.85 -1.73 -2.48 -2.11 -1.89 -2.62 - -3.11 -4.21 -2.85 - - -0.65
- 2.54 0.0 -2.09 - - - - - - -1.76 - - -1.58 3.06 -
- 3.62 - - -1.24 -1.39 - - - - - - - - 1.52 -
-4.41 3.79 -1.5 -1.16 0.26 -3.54 -9.61 - - -8.28 - -8.35 - - - -6.98
-2.78 3.72 - 0.51 - -3.03 - - - - - -2.44 - - -0.1 -
-2.93 3.79 0.04 -0.02 - - - - - - - - - - - -
-0.53 3.6 -1.01 -2.11 -0.75 -1.09 -0.51 -3.25 -4.38 -5.32 -3.47 -2.93 -4.06 -3.84 -4.09 -3.18
- 3.88 - -2.43 - - - - - - - - - - 0.12 -
-7.19 3.96 -4.77 -2.76 -3.1 -4.19 -5.65 -9.27 -8.48 -8.42 -6.57 -7.49 - - - -
-1.63 3.56 -0.65 -1.05 -0.89 -2.0 -1.09 -1.31 -2.02 - -4.15 -3.52 -1.72 -2.04 - -3.07
- 4.0 - - - - - - - - - - - - - -
-2.57 0.48 -2.05 - - - - -3.14 - - - - 1.74 1.32 1.98 2.1
- 3.94 -2.73 - -2.59 -1.77 - -5.37 - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
- 3.75 - 1.37 - - - - - - - - - - - -
- 3.64 -1.01 0.43 -0.87 - - -1.3 - -0.39 - - - - - -
-0.0 3.29 -2.58 0.08 -2.86 -0.52 - -2.65 -3.99 - -3.9 - 0.34 -0.44 -1.69 -0.79
-1.25 3.07 -1.64 - - -2.66 - - - - - - 0.26 0.49 1.82 -0.86
-1.43 3.2 -0.66 0.09 -2.11 0.52 - -1.72 -0.68 -0.62 - - -0.33 - - -0.45
0.24 3.62 - 0.55 - - - 0.08 - - - - - - - -
-2.81 3.47 - 0.63 0.43 - -1.69 -3.09 0.55 - - - - - - -
-3.79 3.07 - -2.1 -1.3 -2.47 - -5.08 - - - - 1.71 -1.61 -0.12 1.1
- 3.97 - - -2.03 -4.51 - - -3.9 - - - - - - -
- 3.96 -2.93 -2.73 -4.19 -5.5 -6.29 - - - -5.8 -5.91 - - - -
-3.24 3.89 -2.28 -2.93 -2.17 -1.29 -3.96 - - - - - - - - -
-2.75 3.71 - - 0.81 - 0.02 - - - - - - - - -
- 3.04 - -0.04 - - - - - - - - - 2.76 - -
-0.95 1.77 -1.0 -3.66 - - -3.09 -0.87 - - - -2.42 1.23 0.98 2.2 0.78
- 3.43 -0.25 -2.07 0.49 - -3.1 - - - - -0.81 -1.53 - 0.45 -1.65
- 3.61 -0.47 -2.13 -0.75 -2.5 - -1.43 -0.3 -0.24 - - - - - -
-7.0 3.73 -1.44 -0.96 -0.92 -0.75 -0.63 -5.98 -8.86 - -6.77 -5.55 - - - -
-3.18 2.26 -0.37 - - - - - - - - -1.37 1.51 -0.17 0.9 2.12
-2.96 3.92 - -1.72 - - - - - - - - - -1.25 - -
0.26 3.72 -1.58 -0.45 -3.83 -3.99 - -7.37 -5.68 - -5.59 - -4.37 -4.47 -1.81 -
- 3.95 -2.87 -3.21 - -5.9 - - -2.11 -5.22 - - - - - -
- 3.89 - - - - - - - - - - - - 0.21 -
- 3.84 - - - -1.1 - - - - - - - - 0.23 -
- 3.88 - - -0.46 - - -4.26 -1.98 - - - - -1.77 - -
-0.79 3.78 -0.51 -0.94 -4.34 -1.47 -7.46 - - - - - - - - -
- 3.26 -0.31 -0.9 0.32 -0.42 -0.06 -0.75 -2.97 - -1.06 -0.39 -2.65 - - -
-1.96 3.83 - -0.62 - - - - - - - - - -0.18 - -
- 3.87 - 0.42 - - - - - - - - - - - -
-2.88 3.94 -2.61 -2.27 - - -3.28 - - - - - - - - -
0.01 3.39 -1.64 - - - - -4.3 - - - - - -0.82 1.84 -
0.1 3.5 0.95 - - - - - - - - - - 0.76 - -
- 3.86 -0.19 - -0.65 - - - - - - - - - - -
- 3.78 -0.98 0.16 -1.27 -2.02 - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
-2.44 3.63 -0.36 -1.15 -2.12 -2.25 -0.91 -6.52 - - -1.1 -0.62 - -3.01 - -
- 3.5 -0.64 - - -0.67 - -3.29 - - -1.55 -1.65 - 1.4 - -
- 3.93 -6.11 -5.78 -3.4 -6.14 -6.78 -4.6 - -5.47 -2.27 -2.73 - -5.29 -3.22 -
-1.07 3.96 - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
-7.2 3.97 -3.27 -2.69 -7.16 - -4.15 -7.93 - - -5.62 -5.1 - - - -
-0.18 2.68 -0.49 -1.15 - -3.52 -4.17 -2.26 -2.9 -2.84 - - 1.58 1.23 -0.61 -0.12
- 4.0 - - - - - - - - - - - - - -
-4.53 3.73 -3.78 -4.03 -2.14 -2.7 - -4.42 - - -4.71 - -1.27 -0.26 -0.89 -1.98
-0.8 3.45 -0.54 -1.27 -2.17 -1.64 -3.65 -1.84 - - -3.64 -1.93 -0.58 -0.16 - -0.7
-2.88 3.78 -2.43 -3.1 - -3.46 -3.51 - - - - - -2.51 -0.44 -0.54 -
-7.18 3.63 -0.6 -0.63 -1.78 -0.77 -2.04 -4.17 -1.88 -2.82 -2.54 -2.8 -2.52 -5.03 -2.96 -4.64
-3.76 3.95 - - -3.78 -1.34 - - - - - - - - - -
-2.3 3.3 -1.94 -1.19 -4.39 -2.56 -2.02 -1.36 -2.96 -2.9 - - - -0.2 1.69 -
- 3.99 - - - -2.87 - - - - - - - - - -
- 3.89 -3.14 -2.8 - -1.17 - - - - - - - -3.34 -1.27 -
-5.68 3.97 -2.3 - - -4.92 - - - - - -4.33 - - - -
-0.74 3.7 -0.92 -0.48 - -3.98 -4.14 - -2.52 -1.31 -1.69 -5.7 - -5.46 -3.39 -
- 3.6 -1.06 -1.13 -2.94 -1.08 -2.15 -1.84 -2.45 -1.39 - - - -1.25 -0.18 -
-6.16 3.5 -1.38 -1.36 -0.64 -3.31 0.08 -1.4 -2.1 -2.04 -0.68 -1.53 -2.38 - - -3.5
- 3.65 -1.03 0.48 -1.29 - - -4.93 - - -1.89 -2.0 -2.31 -2.41 - -2.44
- 3.54 0.16 -1.83 -0.03 -0.61 -1.03 - - - - - - - -0.28 -
-1.97 3.93 -2.66 - - - - -3.34 - - - - - -1.85 - -
- 3.96 -5.59 -3.08 -4.48 -2.36 -6.27 -6.71 - - - -4.99 - - - -
-5.28 3.97 -2.79 -2.45 - - - - - - - - - - - -
- 3.86 0.61 - - - - - - - - - - - - -
- 3.69 -0.96 - -2.42 -1.58 - - - -1.91 -0.88 - - - 0.34 -
- 3.48 - 0.79 - - - -0.61 - - - - - 1.28 - -
- 4.0 - - - - - - - - - - - - - -
- 3.91 -4.03 -1.96 -2.31 -4.07 -4.7 -2.65 - - -4.95 - - - -2.72 -
-2.89 3.15 -2.68 -1.35 - - - -0.72 - -3.05 -2.01 -2.12 1.23 -0.06 -0.79 0.43
-5.34 3.64 -0.17 -1.07 -1.7 -1.86 -3.09 -3.92 -2.82 -3.76 -2.72 -2.83 - -3.59 - -0.31
-1.6 3.91 -1.81 - - - - - - -3.18 - - -1.89 - - -
-1.9 3.43 - -0.3 -2.52 -1.09 - - - - - - - -1.83 1.56 -1.86
-8.85 3.96 -2.89 -2.58 -4.76 -4.19 - - - -8.42 - -4.79 - - - -
- 3.85 -3.83 -0.91 - -0.78 -3.5 - - - - - - - -1.94 -
0.13 3.65 1.25 - - - - - - - - - - - - -
-3.04 3.82 -1.93 -1.6 -1.55 -1.11 -6.6 -5.78 -3.03 -5.29 -3.26 -4.36 - - - -
-3.75 3.72 -0.74 -1.54 -0.91 -1.6 -1.02 -6.14 -3.79 -2.71 -4.25 -2.3 - - - -
-5.84 3.92 -1.72 -3.33 -4.24 -3.4 -5.72 -5.44 - - -5.7 - -5.45 -3.09 -4.48 -3.99
- 3.75 -1.75 -3.88 -0.31 -2.25 -0.98 -0.87 - - - -3.07 - - - -
-5.17 3.77 -3.23 -3.07 -3.46 -1.05 -6.07 -4.88 -3.84 -3.46 -5.74 -4.85 -1.68 -1.19 -1.19 -3.61
-2.96 3.8 - - -1.58 -1.42 - -3.05 - - - - - - 0.17 -
- 3.92 -2.34 -2.0 - -1.37 - -5.0 - - - - - - - -
- 3.95 -3.32 -3.47 -2.19 -3.23 -4.57 -10.57 - - - - - - - -
- 3.93 -2.63 -1.91 -3.72 -6.36 -4.08 -6.38 -3.22 -3.66 -7.4 -6.5 - - - -7.85
- 3.95 -3.74 - -2.61 - -4.42 -3.59 - - - -2.18 - - - -
-6.58 3.79 -2.74 -5.19 -4.44 -3.96 - -3.58 -4.91 -4.86 -4.81 - - - 0.78 -
-2.76 3.76 -4.01 -4.07 -5.07 -4.22 -4.73 -3.16 -2.95 -3.0 -3.39 -4.74 -5.02 -4.01 0.39 -2.69
- 2.36 - - - -2.26 - -5.93 - - - - -0.34 2.15 2.22 -0.46
-3.26 3.38 -0.03 -0.28 -0.57 -1.2 -1.91 -0.81 -4.22 -3.63 -3.13 -2.27 -2.04 -0.81 -2.06 -2.16
- 3.88 - -1.31 - - - -4.88 - - - - - - -0.34 -
-1.38 3.31 - 1.39 - - - -0.62 - - - - - 1.28 - -
-4.53 3.94 -3.42 - -3.29 -4.2 -2.96 -4.59 - - - -5.19 - - -2.86 -
- 3.52 - - 0.09 - - - - - - - - 1.78 - -
-4.97 3.93 - -4.51 -7.54 -1.44 - -6.44 -2.53 -7.0 -5.38 -7.07 - -6.85 -3.78 -
- 3.82 - - - - - 0.89 - - - - - - - -
-10.98 3.94 -4.81 -3.52 -4.58 -1.28 -4.71 -8.65 -4.94 -7.52 -7.9 -7.59 - - - -
0.79 3.84 - - - - - - - - - - - - - -
- 3.87 -2.15 - - - - - - - - - - - 0.14 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.