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Heatmap: Cluster_111 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - -0.74 - 1.5 1.1 0.32 1.88 -0.15 -1.68 0.94 -0.16 - - 0.55 -
- - - - - -5.06 - -5.7 -5.44 -5.38 - - 2.47 2.35 1.1 1.64
- - - - - 3.45 - 2.33 - - - - - - - -
-1.62 0.84 -0.67 -1.17 0.47 1.59 -1.34 0.72 1.44 0.81 -2.65 -0.06 -3.4 -4.49 -1.42 -1.93
-1.9 2.01 0.6 0.37 -1.16 1.65 -4.2 -1.61 1.98 -1.16 -2.5 -3.34 -2.62 - - -3.75
- - - - - 2.36 - - 3.0 - 1.51 - - - - -
-5.66 -3.77 0.48 0.41 -2.06 2.68 -7.19 -4.32 2.36 -1.16 -1.34 -1.31 - -8.03 -3.64 -
-3.51 -6.1 - -4.03 -4.27 -1.81 -4.47 -2.27 -2.76 -4.71 - -4.77 1.94 2.04 0.49 2.5
-0.13 0.24 -1.72 -2.96 -1.45 -0.35 -0.98 -0.21 0.59 0.06 -2.2 -2.23 1.26 1.26 0.29 0.96
1.71 - - - - 3.05 - 2.15 - - - - - - - -
- -2.53 -1.53 -2.01 -2.21 -0.21 -2.69 -0.63 - -3.71 - -2.79 1.04 2.96 0.14 1.15
-0.81 - - - -0.22 1.01 - 1.02 0.31 -0.64 - - 1.57 0.48 1.55 0.45
0.56 -2.09 -1.4 -2.07 -0.89 1.76 0.34 1.64 -0.15 -0.18 -2.06 -0.84 -0.22 -0.73 -1.83 0.07
-3.24 - 0.4 -0.62 -0.38 2.43 -3.63 -0.8 2.67 -1.5 - -2.79 - - -2.08 -
-3.48 1.68 -2.69 -0.03 -1.55 2.67 0.34 - - - -0.44 0.2 0.23 - - -0.9
-1.29 - 0.16 -0.09 -1.31 1.13 -0.52 1.94 1.49 0.23 - 0.16 - 0.38 - -
- - -0.26 0.09 - 3.19 0.06 1.36 - - 0.46 - - - - -
- 2.46 - - - 3.39 - - - - - - - - - -
- -2.78 - - 1.52 0.94 1.59 1.42 -0.03 0.77 0.48 0.38 - - - -
-9.15 -5.47 -7.25 -1.32 -3.0 2.81 -4.92 -1.98 2.96 -3.06 -2.68 -3.01 - - - -
-5.29 -6.63 -4.68 -5.54 -4.96 -2.86 -2.94 -2.41 -5.53 -3.97 -5.43 -6.54 2.21 2.4 1.21 1.62
-1.21 -0.41 - - - 0.71 - - - - - - 2.21 1.53 - 2.5
0.68 0.8 - - - 1.21 - - -1.49 - - - 1.4 1.72 - 2.02
- - - -2.35 -2.57 2.65 -0.56 -1.29 2.82 - -1.99 -0.1 - - - -
- 3.12 - - - 2.87 - - - - - - - - - -
- 2.63 - - - 3.29 - - - - - - - - - -
-2.39 -2.47 -5.94 -2.67 -2.76 2.6 -3.83 -1.8 2.93 -1.5 -1.88 -2.03 -2.76 -3.69 -5.37 -2.77
-1.56 -0.46 -3.09 - - -1.54 -3.76 -1.65 -0.52 -2.46 -2.42 - 2.9 1.95 -0.2 -0.3
- - - -2.02 1.11 1.31 0.68 2.01 -1.79 1.27 - -1.8 - -1.53 0.54 -0.56
- - -3.47 - -1.75 -1.18 - -0.45 - - - - 1.44 2.63 1.74 1.13
-9.08 -5.52 -7.27 -6.93 -8.14 -2.91 -5.35 -3.35 -4.52 -5.63 - -6.7 2.54 2.6 -0.92 1.69
-1.55 -0.32 -1.9 -1.75 -0.01 -0.13 -1.28 0.78 1.6 0.0 0.69 0.59 0.26 -0.52 -1.79 -0.1
-0.66 0.02 -3.4 -2.43 -3.11 2.07 -1.33 -0.92 2.16 -1.69 -0.41 -1.48 -0.2 0.06 -1.68 -0.45
- 0.89 - - - 2.92 - - 1.31 - - - - - 2.03 -
1.12 1.31 -1.87 -1.24 -1.34 0.86 -0.29 -2.68 -0.86 -1.38 -0.26 0.45 -0.82 -0.43 0.42 0.74
- -2.87 - -0.6 0.13 2.72 -0.87 0.03 2.42 -1.29 -2.23 - - - - -
- - - - 0.88 1.31 - 1.34 - - - - - - 2.64 1.54
-0.57 0.99 - - 0.39 1.56 -1.41 0.06 -0.15 - - - 2.76 - - -
-10.36 - -8.84 -3.28 -2.1 2.53 -10.1 -9.12 3.29 -3.84 -5.19 -6.23 - - - -
0.23 0.51 -1.34 -1.7 -1.21 -0.42 0.05 0.29 0.38 0.12 -1.23 -0.62 0.1 1.91 -0.77 -1.39
-4.0 -1.09 -6.16 -3.82 -1.58 1.81 -1.55 1.34 2.34 0.07 -0.48 -0.5 -1.08 -1.89 - -1.38
-3.46 - 0.34 -0.43 -1.87 2.21 -1.25 0.99 2.11 -2.92 -1.88 -1.4 - -0.18 -0.7 -
-0.52 -0.89 - - - -0.15 -2.82 -0.95 - - - - 0.76 2.75 0.73 1.64
- 0.51 -1.03 1.38 - 3.25 - -4.1 0.92 - - - - - - -
- -2.35 0.24 0.77 -1.22 2.59 -3.16 -1.14 2.05 -1.18 -0.97 -2.66 -1.88 - - -1.32
- - - - - 0.78 - -0.72 -1.19 - - - 1.73 0.05 - 3.15
0.12 1.1 -1.15 -1.64 -1.06 0.87 0.01 0.44 1.42 0.72 -1.15 -0.33 -1.09 -1.62 -2.04 -0.47
0.3 - 1.74 - - 1.71 - 1.19 0.75 - - - 2.06 - - -
- - - 1.15 - 2.11 1.11 2.03 - - - - 1.69 - - -
-1.08 -0.25 - - - 0.99 -0.38 -2.36 - - - - 1.62 0.52 1.59 2.08
- - - - - 2.31 0.35 1.18 - - - - - - 2.91 -
-3.41 -5.98 - -4.02 -3.65 3.13 - - 2.08 -0.07 0.65 -2.2 - -4.55 - -
-3.51 -0.51 -2.71 0.14 -0.88 2.68 -1.14 0.54 1.72 -3.08 -3.05 -2.15 - -2.31 0.17 -
-4.94 -5.6 -1.81 -0.21 -1.47 2.81 -7.16 -5.92 2.14 -1.28 0.47 -0.41 -3.58 -5.67 -4.19 -1.96
0.65 1.01 - - - 0.47 - 0.05 - 0.5 - - 0.74 -0.36 - 2.62
- - - 0.52 -0.68 2.16 - -0.67 2.58 - -0.14 - - - - 0.98
- 0.72 - - - 1.61 - -2.73 - - - - - 2.71 2.2 -
- - - - - 0.7 - 0.83 1.34 - 0.43 0.32 - 0.52 2.59 -
0.52 1.01 -2.73 -2.77 -6.3 1.55 -3.93 -1.08 1.06 -0.2 -1.94 -1.86 0.69 0.31 -1.55 1.06
-3.6 -4.93 -3.56 -2.98 -3.85 -1.38 -2.39 -1.25 -2.2 -1.47 -4.34 -4.18 1.84 2.38 1.44 1.27
-6.99 -3.09 -1.93 -2.04 -0.68 1.47 0.01 1.55 1.96 -0.2 1.05 0.15 -3.95 -6.81 -7.65 -4.66
-2.38 -0.82 -2.55 - -0.84 2.06 -3.22 1.73 1.74 -0.91 - -1.98 -0.64 -0.15 0.33 -
-6.12 -5.64 -6.08 -4.2 -5.78 -1.57 -3.51 -1.93 -4.11 -2.35 -3.25 -3.47 2.67 1.12 -5.38 2.63
- 0.19 - - 0.97 2.15 - -2.83 2.46 0.52 - 0.45 - - - -
- -2.95 -0.56 -3.04 0.08 2.21 -0.58 2.46 1.12 -1.73 -1.11 -1.8 - - - -
- - 0.66 - - 2.21 - 2.08 - - - - - 2.47 - -
- - - - - 3.57 - 2.04 - - - - - - - -
- 0.3 - - - 0.16 - -1.05 - - - - 2.08 1.98 1.05 1.54
-5.57 - - - -3.04 -2.47 - -1.77 -2.59 - -3.08 - 1.61 2.21 2.04 1.73
-3.29 -3.29 -3.6 -2.87 -3.36 3.22 -2.24 1.92 -1.04 -1.46 -4.16 -2.96 -1.44 -2.19 -3.29 -1.28
- - 0.5 -0.02 0.45 1.38 1.41 1.64 -2.09 -2.03 0.81 - - - - 0.7
- - 1.48 0.81 - 1.45 2.13 2.13 - - - - - - - -
- - - -0.58 0.2 2.76 - -2.61 2.5 - - 0.68 - - - -
-1.03 -0.74 -4.99 -3.07 -4.86 -1.7 -3.34 -2.84 -0.17 -1.03 -3.32 - 1.51 2.09 1.07 1.8
0.84 1.37 -3.6 -3.25 -0.24 0.12 -1.53 0.36 0.32 0.73 -1.28 -2.59 0.49 0.21 -0.92 0.38
0.81 1.22 -0.31 0.02 -1.44 0.39 0.0 0.87 -0.51 0.65 -1.24 -1.33 0.59 -1.62 -0.58 -
-0.85 -0.3 -3.02 -2.23 -2.89 0.48 -1.69 -0.57 -0.93 -1.69 -2.77 -2.29 1.29 0.97 0.96 2.09
-0.32 -0.7 -0.76 -0.37 -0.26 0.35 0.34 0.34 0.02 0.04 0.23 -1.03 0.47 0.19 -0.38 0.66
- 1.09 - - - 1.61 - - - - - - - - 3.44 -
- - - 1.94 - 2.57 - 2.64 - - - - - - - -
-4.52 - -6.44 -7.69 -7.22 -2.99 -5.38 -3.1 - - - -8.45 2.02 1.87 2.15 1.82
- - 1.77 - - 1.81 - 2.12 2.23 - - - - - - -
-0.12 0.07 -4.04 -3.87 -2.39 1.06 -1.28 0.2 -0.48 -2.19 -1.75 -1.09 1.61 0.43 -0.43 1.68
-2.65 1.21 -0.55 -0.46 -1.54 1.77 -1.75 -3.29 2.07 -1.88 -1.16 -3.68 -1.92 0.3 0.22 -1.73
- -0.01 - - 0.64 2.47 - 1.36 1.07 0.55 - - 0.84 - - -
-5.52 - - -3.42 0.9 2.33 0.71 0.5 2.09 -1.81 -0.78 -1.62 - -2.35 -1.86 -
- - - - -0.71 -0.23 -1.5 0.21 -1.17 -1.13 -1.08 - 2.4 0.57 - 2.28
0.87 2.43 - 0.99 -0.21 1.95 - -0.19 0.23 - - - - - - -
- - - - - 3.17 - 2.81 - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.