Heatmap: Cluster_97 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	stage A1 (Dhaka et al., 2020)	stage A3 (Dhaka et al., 2020)	M-81E strain-control (Sun et al., 2020)	M-81E strain-salt (Sun et al., 2020)	Roma strain-control (Sun et al., 2020)	Roma strain-salt (Sun et al., 2020)	root (Murray et al., 2022)	shoot system (Murray et al., 2022)	119 days old-Postflowering drought stress (Varoquaux et al., 2019)	84 days old-control (Varoquaux et al., 2019)	84 days old-Preflowering drought stress (Varoquaux et al., 2019)	35 days old-control (Varoquaux et al., 2019)	Dev Stage 3 (Leiboff et al., 2019)	Dev Stage 2 (Leiboff et al., 2019)	Dev Stage 1 (Leiboff et al., 2019)	Dev Stage 4 (Leiboff et al., 2019)
Sobic.001G004550.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.001G096600.1	-	-	-	-	3.48	-	-	2.28	-	-	-	-	-	-	-	-
Sobic.001G176501.1	-	-	-	-	-	4.0	-	-	-	-	-	-	-	-	-	-
Sobic.001G201200.1	-5.31	-	-	-	-4.36	-4.52	-	-	-5.49	-	-3.4	-1.69	0.84	-1.01	3.64	-0.59
Sobic.001G213150.1	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.001G259500.1	-	-	-	-	2.46	0.36	-	-	-	-	-	-	-	-	3.2	-
Sobic.001G262950.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.001G397850.1	-2.67	-	-	-	1.87	2.37	2.39	-1.05	-	-	-0.17	-1.28	-	-	-	-
Sobic.001G412300.3	0.64	-1.17	-	-	-1.18	-0.27	-	-0.45	-	-	-	-	2.19	0.51	2.58	-
Sobic.001G418500.1	-1.45	-	-	-	-	-0.58	-	-	-	-	-	-	-	-	3.9	-
Sobic.001G424066.1	-	-	-2.26	-1.93	-2.13	-2.29	-	-1.22	-	-1.62	-	-1.69	0.65	2.55	0.63	2.33
Sobic.001G442750.1	-	-	-	-	1.08	0.95	3.1	-	-	-	-	-	-	1.77	-	-
Sobic.001G466450.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.001G497400.1	-	-	-	-	-	-	-	-	-	-	-	-	2.81	2.13	2.2	-
Sobic.002G039700.1	-	-	-	3.53	-	2.16	-	-	-	-	-	-	-	-	-	-
Sobic.002G077400.1	-	-	-	-	-	4.0	-	-	-	-	-	-	-	-	-	-
Sobic.002G090100.1	1.28	-	-	-	2.71	-	2.81	-	-	-	-	-	-	-	-	-
Sobic.002G096300.1	-	-	-0.63	-0.3	0.5	2.14	2.4	-1.28	-	1.0	0.03	-	-	-	-	-
Sobic.002G111300.1	-1.48	-2.27	-2.51	-	0.18	0.8	1.66	1.18	-	-	-1.79	0.69	1.7	-	-	0.84
Sobic.002G142950.1	-	-	-	-	-	-	-	-	-	-	-	-	2.43	-	3.41	-
Sobic.002G147550.1	-	-	-	-	-	-	-	-	-	-	-	-	1.86	0.77	3.25	0.16
Sobic.002G150550.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.002G153050.1	-1.08	-	-0.25	-	-0.12	-	-	-	-	0.4	-	-	-	-	3.64	-
Sobic.002G161100.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.002G191900.1	-	-	-	-	-	-	-	-	-	-	-	-	-	4.0	-	-
Sobic.002G221450.1	-1.92	-1.67	-0.15	-1.81	0.31	1.14	-1.23	-0.1	-	-0.52	1.1	-0.01	-	-0.31	1.0	1.48
Sobic.002G352501.1	-	-0.75	-	-	-	-	-	-2.87	-	-	-	-	-	1.59	2.66	2.56
Sobic.002G397700.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.002G416300.1	-	-	-	-	-	-	-	-0.15	-	-	-	-	-	-	3.92	-
Sobic.003G069875.1	-	-	-	-	-	4.0	-	-	-	-	-	-	-	-	-	-
Sobic.003G091900.1	-	-	-	-	-	-	-	-8.35	-	-	-	-	2.42	1.94	1.53	1.97
Sobic.003G097701.1	-	-	-	-	1.47	2.18	2.44	-1.2	-	-	0.33	0.64	-	-	-	-
Sobic.003G098650.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.003G124400.1	-	-	-	0.6	-	-	-	-	-	-	-	-	2.26	2.21	-	2.34
Sobic.003G141200.2	-1.11	-	-0.76	-1.02	2.25	0.94	2.2	-	-	-	-	0.79	-	-	0.55	-
Sobic.003G162633.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.003G178601.1	-2.07	-2.88	-	-2.16	-0.86	-0.71	-0.0	-1.6	-	-1.87	-1.81	-1.92	2.52	0.84	1.33	1.04
Sobic.003G198032.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.003G198850.1	1.26	-	-	-	-0.3	0.56	0.49	-	0.19	0.25	-	0.18	-	0.39	-	2.36
Sobic.003G204300.1	-	-	-	-	-	-	2.78	-	-	-	3.19	-	-	-	-	-
Sobic.003G239750.1	-	-	-	-	-	-	-	-	-	-	-	-	2.22	1.12	3.2	-
Sobic.003G244500.1	-1.77	-	-	-	-	-	-1.1	-2.9	-	-	-2.61	-	2.58	2.04	1.44	1.08
Sobic.003G266300.1	-	-	-1.67	-	-1.55	1.31	1.36	-	-	-	-	-1.07	-	-0.86	3.21	-
Sobic.003G279400.1	-	-	2.26	-	2.37	1.24	-	-	1.88	-	-	-	-	-	-	-
Sobic.003G285101.1	0.77	-	-	-	0.68	1.51	1.88	0.9	2.11	-	-	-	-	-	-	-
Sobic.003G324800.2	-	-	-	-	1.7	1.55	1.49	0.6	-	-	-	-	-	-	2.46	-
Sobic.003G357000.1	1.04	1.49	1.38	-	0.5	-0.64	-	-0.51	-0.0	-	-	-	-	-	2.26	-
Sobic.003G373150.1	-3.11	-1.88	-	0.92	1.06	1.45	1.34	-0.0	-	-	-	0.68	-	-	0.65	1.14
Sobic.004G048400.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.004G092700.1	-	-	-	-	-	2.63	-	-	-	3.3	-	-	-	-	-	-
Sobic.004G178700.1	-	-1.98	-	-	1.05	-1.43	-2.07	-0.15	0.18	-	-	-	0.51	2.0	2.49	-
Sobic.004G304550.1	-	-	-	-1.29	2.32	0.93	1.41	-2.69	0.95	-0.99	0.05	1.27	-	-	-	-
Sobic.004G305300.1	-	-	-	-	-	-	-	-	-	-	-	-	0.75	1.66	2.31	2.63
Sobic.004G324500.2	-	-	-	-	-	-6.74	-4.37	-5.35	-	-	-	-	2.01	1.95	2.07	1.94
Sobic.005G003750.1	-2.43	-	-	-0.64	-2.44	-	1.29	-0.92	-	-	-	-	1.34	1.71	2.64	-
Sobic.005G056000.2	-0.01	-1.01	0.14	0.08	0.89	0.47	0.27	0.81	0.33	0.4	0.36	-0.91	-1.22	-0.41	-1.44	-2.16
Sobic.005G067600.1	-0.92	1.88	-	-	0.75	0.6	0.68	-	0.66	-	-	-	0.93	-	-	1.81
Sobic.005G083100.1	-0.87	-	-	-	-	1.27	2.12	-	-	-	-	-	-	-	3.12	-
Sobic.005G083160.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.005G091100.1	-1.95	-	-2.67	-	-0.54	0.31	0.91	0.63	-	-	-	-2.08	0.82	0.14	0.21	2.58
Sobic.005G100200.2	-0.35	-	-	-	0.55	1.96	-	-	-	-	-	-	-	-	3.3	-
Sobic.005G117700.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.005G134900.1	1.82	3.64	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.005G144900.1	-	-	-	-	1.41	2.85	2.62	-	-	-	-	-	-	-	-	-
Sobic.005G164966.1	-	-1.12	-1.09	-1.75	-0.38	-0.8	-1.18	-0.27	-1.5	-0.44	-0.4	-	1.82	1.42	-0.21	1.69
Sobic.005G226200.1	-1.11	-	-1.32	-0.4	2.81	0.96	2.18	-2.97	-	-	-	-	-0.41	-	-	-
Sobic.006G019200.2	-	-	-0.07	-1.74	-	0.7	2.46	-0.94	-	-	-	-1.49	-	2.06	0.81	-0.29
Sobic.006G034900.2	-	-	-	-	-	2.51	-	-	-	-	-	-	-	3.37	-	-
Sobic.006G036801.1	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.006G053900.1	-	-	-	-	3.35	-	2.55	-	-	-	-	-	-	-	-	-
Sobic.006G178900.1	-0.49	1.57	0.9	-0.35	0.44	1.28	1.64	0.83	-	-	-0.02	-	-	-	-	-
Sobic.006G231332.1	-8.1	-5.62	-5.76	-5.93	-2.87	-5.91	-	-8.02	-8.63	-8.59	-4.58	-4.62	3.25	1.74	1.25	-1.21
Sobic.006G260700.1	-	-	-	-	-	-	-	-1.53	-	-	-	-	-	1.94	3.01	1.91
Sobic.007G021500.1	0.6	-0.43	-1.05	-0.34	0.29	-0.15	2.37	0.21	-2.18	-2.12	-2.5	-1.02	-2.84	-0.32	-0.28	0.2
Sobic.007G037200.1	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.007G038300.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.007G043050.1	-	-	-	-	-	-	-	-	-	-	-	-	3.79	1.11	-	-
Sobic.007G047200.1	-0.5	-0.7	-3.18	-	0.76	-1.63	1.85	-0.66	-0.96	0.27	0.48	-0.04	-1.26	-0.78	1.29	-0.39
Sobic.007G069750.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.007G104000.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.0	-
Sobic.007G104100.1	-	-	-	-	2.35	-	-	3.44	-	-	-	-	-	-	-	-
Sobic.007G149950.1	-	-1.97	-2.3	-	-3.18	-0.6	-	-	-	-	-	-2.7	2.41	2.09	1.16	1.48
Sobic.007G152500.1	-	-	-	-	-0.43	0.4	-0.23	-	1.01	0.07	-	-	-	-	3.32	-
Sobic.008G008701.1	-	-	-	-	-	3.17	-	-	-	-	-	2.8	-	-	-	-
Sobic.008G050500.1	-	2.69	-	-	-	3.25	-	-	-	-	-	-	-	-	-	-
Sobic.008G056350.1	-1.47	-3.26	-	-3.43	-2.68	-1.62	-1.01	-0.86	-3.15	-2.52	-2.05	-2.16	2.63	1.26	0.67	1.57
Sobic.008G064200.1	-	-	-	-	-	-	-	-	-	-	-	-	2.87	2.36	1.84	-
Sobic.008G075300.1	-0.94	-0.72	-	-	-	-	-	-	-	-	-	-	-	-	3.89	-
Sobic.008G091900.1	-	1.41	-	-	-	-	2.62	-	-	-	-	-	-	2.84	-	-
Sobic.008G112700.1	-	-	-	2.39	2.19	-	-	-	-	-	-	2.63	-	-	-	-
Sobic.008G181200.1	0.89	-	-	-	3.44	1.71	-	-	-	-	-	-	-	-	-	-
Sobic.009G098000.1	-1.09	-2.84	-1.31	0.02	-0.37	0.56	0.8	-3.79	-3.75	-3.69	-2.07	-3.76	1.3	1.03	0.16	1.94
Sobic.009G173900.1	-	-	0.21	0.56	0.92	1.51	0.12	-0.15	0.83	-	-	-0.19	-	-	-	1.99
Sobic.009G197500.1	2.71	-	-	-	1.81	-	-	2.57	-	-	-	-	-	-	-	-
Sobic.009G218700.1	-0.15	-1.69	-1.23	-2.08	-0.7	-0.35	-0.14	-1.13	-3.07	-	-1.97	-3.66	1.59	1.93	1.57	0.15
Sobic.010G054100.1	-0.12	-2.11	-0.43	-0.02	0.32	0.83	0.54	-0.53	-1.03	-1.53	-0.11	-0.77	0.47	0.52	-0.13	0.89
Sobic.010G054500.2	-	-	-	-	0.19	0.36	2.64	1.87	-0.33	-0.27	0.35	-0.34	-	-	-	-
Sobic.010G062400.1	-	-	-	-	-	-	0.36	-	-	-	-	-	2.94	-	-	2.82
Sobic.010G165975.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.010G174600.1	-0.81	0.36	-	-	-	2.17	-	-	-	-	-	1.45	-	2.79	-	-
Sobic.010G238300.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.0	-
Sobic.010G258200.1	-	-	-	-	1.76	1.63	1.4	0.88	-	1.12	1.17	-	-	-0.72	-	-
Sobic.010G265400.1	-	0.4	-	-	-	-	3.39	-0.97	-	-	1.89	-	-	-	-	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.