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Heatmap: Cluster_45 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.1 -0.09 0.34 0.65 -1.39 -1.17 0.04 0.48 0.46 0.16 -0.06 -0.25 0.11 -0.34 -0.38 -0.05
-3.76 0.75 0.71 1.48 0.4 0.29 -1.19 2.09 1.01 -1.51 -4.29 -4.39 - -4.14 -3.65 -
-4.68 -6.75 0.9 0.82 -5.67 -5.84 -0.73 1.42 -0.14 -0.38 -1.82 -0.59 -2.57 -3.29 -3.92 2.6
-0.43 -0.87 -0.33 0.24 -1.96 -0.39 -0.35 -0.51 0.05 -0.52 -0.27 -0.42 0.72 0.58 0.9 0.94
- - 0.69 2.35 - -1.93 -1.56 2.23 1.0 -0.27 - 0.25 - - - -
- -2.99 1.54 0.22 -0.18 0.7 -0.52 1.85 -1.86 0.52 -0.03 -0.29 -0.51 -1.62 - -1.11
2.43 - - 2.6 - - - 2.18 - - - - - - - -
- -0.76 1.01 1.16 -0.28 1.16 -2.77 2.7 -0.86 -0.79 - - - - -1.53 -
- - - 1.77 - - - - - - - - 1.6 3.26 - -
-4.81 -8.09 -3.65 -3.08 -5.21 -4.19 -11.22 -2.53 -7.39 - -8.88 -9.99 2.18 1.66 0.98 2.55
- - 1.64 1.69 -0.74 2.11 -4.35 2.19 -3.11 - - - - - - -
-0.48 - 0.36 1.55 0.06 -0.26 -0.19 2.21 -1.97 -3.41 -1.97 -1.68 -0.47 -0.17 -0.93 -0.67
0.79 0.63 0.66 0.37 -2.91 -2.97 -1.56 1.77 1.41 0.5 -1.15 -1.67 -2.42 -2.5 -2.47 -1.1
-6.25 - -4.02 -4.42 -6.23 -4.05 - -3.2 - - - - 1.69 2.12 0.34 2.78
- 1.42 2.18 1.51 -0.69 - - 1.84 -0.24 -0.18 - - - - - -
-0.89 -1.11 -0.13 1.08 0.3 0.1 0.34 2.67 - -5.22 -3.19 -0.47 -3.12 -1.19 -4.95 -0.77
-5.68 - 1.31 0.59 0.0 0.03 0.73 2.72 -5.87 - 0.13 -0.99 - -5.02 -3.54 -
-4.06 - 0.12 0.42 -2.46 -1.73 -0.14 0.83 - -4.5 -1.15 -0.87 2.26 0.22 -2.29 1.66
- - - 4.0 - - - - - - - - - - - -
-1.53 -5.6 -1.55 0.18 - - -1.13 0.16 -0.5 -0.75 -0.97 -1.48 1.73 0.75 0.68 1.93
- - - - - - - 0.05 0.83 - - - - - 3.72 -
- - - 0.76 - 0.39 - 0.89 1.03 - - - - - - 3.19
-2.15 -0.05 0.64 1.36 -1.17 1.12 0.95 0.9 -3.29 -2.75 -1.47 -0.44 0.05 -1.0 -4.1 0.41
-2.32 1.74 0.28 2.11 0.58 -0.2 -2.05 1.93 -4.24 -4.6 -6.15 -4.67 -3.3 - -2.33 -4.01
-0.95 0.3 1.32 0.17 -0.03 - 0.01 1.43 -1.92 -0.86 - - -0.57 0.92 0.4 0.3
-2.36 0.35 0.88 0.34 -1.44 0.19 0.07 1.5 -0.42 -1.95 -1.91 -1.02 - 0.83 1.31 -
- -5.14 - -0.87 -3.34 - -5.13 -0.38 - - - - 2.12 1.17 0.25 2.75
0.03 -0.54 0.83 1.0 0.15 -0.56 0.4 1.04 -0.35 -0.39 -0.11 0.2 -1.29 -1.2 -1.12 -1.28
- - 0.53 0.86 -0.92 - - 0.55 - - - - - - 3.42 -
- - -3.03 -2.11 - - - -2.11 - - - - -0.54 1.54 2.76 2.34
0.94 - 1.7 - - - - 1.49 - - - - - - 3.0 -
-3.01 -3.08 0.61 1.18 0.98 0.92 -1.25 2.53 -4.03 -1.63 -1.58 -1.0 - - -0.54 -
-5.48 -5.85 -0.18 -0.36 -1.6 -1.73 -0.5 0.55 -3.48 -3.43 -3.06 -4.49 2.47 1.26 0.42 0.9
- - - 2.3 - - -1.03 1.87 0.25 - - - - - 2.52 -
-4.36 -5.44 -0.01 -0.09 -4.39 -2.86 -1.55 -0.43 -0.85 -0.73 -1.34 -2.01 1.82 1.09 0.8 1.82
- - 1.55 1.37 - - 0.8 1.75 - - - - - 0.95 - 1.79
0.42 -0.12 0.44 0.66 -1.28 -0.89 0.26 0.09 0.85 0.08 -0.06 -0.06 -0.56 -0.53 -0.48 -0.47
-6.91 - 1.99 1.62 -1.15 -3.12 0.98 2.22 -3.51 -0.62 -1.66 -0.79 -5.18 -6.27 - -3.72
- - - - - - - 0.85 1.29 - - - 2.62 - - 2.49
-1.73 - -0.87 -2.56 -3.42 -1.89 -1.95 -1.21 - - -6.47 -2.99 1.82 1.83 2.17 1.14
1.44 - - 2.65 - - - 2.4 - - - - - 0.8 - -
- - - 1.07 - - - 1.39 1.33 - - - - 3.13 - -
-0.33 -0.35 0.08 0.34 0.0 -0.09 -0.11 0.33 0.0 -0.22 -0.32 -0.35 0.21 0.13 0.01 0.34
-5.04 0.07 0.73 1.15 -0.19 1.72 0.38 1.81 -2.4 -2.87 0.23 -0.99 - -4.1 - -
-3.93 - -0.75 1.35 0.75 0.22 -0.94 3.08 - - - -1.49 - -2.26 - -1.29
- - 0.14 1.02 - - -0.6 0.93 -0.42 - - - 1.59 0.54 0.71 1.79
-0.52 -1.75 1.31 - - - -0.74 1.11 - - - - 1.87 1.36 - 1.83
-1.73 0.12 0.39 0.65 -0.3 -0.41 0.11 1.68 -0.26 -0.86 -1.25 -2.2 0.64 -0.45 - 0.67
-1.97 -0.22 -0.05 2.83 0.02 -1.02 -2.09 2.13 - - -0.61 - - - - -
-2.23 - -0.64 -1.22 -1.2 -0.31 -3.22 -0.04 - - -4.69 -3.06 2.29 1.18 -0.89 2.18
-1.67 -1.13 -0.92 -0.83 -2.29 -0.89 -1.32 0.65 - - -5.71 -3.49 1.22 1.8 2.01 0.54
- - - 1.65 - - - 2.42 2.91 - - - - - - -
- -1.47 0.5 1.1 -2.0 -1.07 1.09 1.6 1.99 - 0.22 0.1 - - - -
- - - 4.0 - - - - - - - - - - - -
-1.22 -0.24 1.36 1.22 0.1 0.31 0.92 1.74 -2.92 -1.66 -2.45 -0.9 -1.75 -2.11 -2.95 -1.14
-5.31 -0.26 0.07 0.96 0.54 0.48 0.41 1.53 -3.14 -4.67 -6.22 -2.74 0.53 0.95 -1.66 0.09
-3.36 -2.68 0.04 -1.08 - - -1.37 0.28 - - - -1.75 1.81 1.14 2.09 1.25
- - 0.5 2.28 -0.6 - - 3.07 - -1.66 - - - -1.5 - -
-2.01 -0.14 1.83 1.09 0.64 -0.44 -5.02 2.07 -0.58 -0.68 -7.08 -3.86 -0.97 -3.08 -1.88 -1.46
-0.29 -0.47 0.16 0.63 0.04 0.31 0.08 0.43 -0.53 -0.88 -0.34 -0.39 0.36 -0.0 -0.34 0.34
- - - 0.81 - 0.44 - 1.83 2.04 - - - 2.39 - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.