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Heatmap: Cluster_20 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - - -2.6 - - -2.61 - - -2.29 - -2.36 1.97 1.96 0.95 2.47
0.24 -1.15 -0.12 0.88 -0.18 -0.5 0.43 -1.52 -0.02 0.22 0.53 0.37 -0.14 -0.7 -0.45 0.25
-0.62 -1.38 0.4 0.63 0.05 -0.33 1.05 -0.65 0.15 1.16 -0.04 0.4 -0.79 -1.16 -2.54 -0.44
0.66 0.07 0.4 0.87 -1.3 -0.4 0.6 -0.72 -0.45 -1.38 0.25 -0.03 0.05 0.05 -1.15 0.17
0.46 -0.06 -0.37 0.62 -0.63 -0.3 0.26 -0.21 -0.52 -0.54 -0.32 -0.22 0.44 0.17 -0.12 0.45
0.72 -0.25 -0.3 0.13 -0.64 -0.71 -0.02 -0.8 -0.31 -0.1 0.02 -0.32 0.43 0.36 0.11 0.6
- - - 3.14 2.84 - - - - - - - - - - -
- - - 2.84 - - 2.53 - - - 1.63 - - - - -
0.28 0.38 -0.34 -0.61 -0.95 -1.28 -0.45 -2.23 -2.7 -3.09 -1.81 -1.65 1.0 1.34 1.26 1.24
-0.2 -0.82 -0.29 0.27 -0.11 -0.06 0.24 -0.34 -0.52 -0.12 0.3 0.12 0.36 -0.08 -0.07 0.65
0.75 -0.96 -0.58 -0.26 -0.28 -0.41 -0.42 -0.93 -0.14 0.05 -0.02 0.05 0.78 0.11 0.1 0.68
- - 0.47 1.32 0.84 -1.56 3.25 -2.63 - -3.12 -4.37 -2.88 - - - -
- -0.54 0.01 1.51 -1.86 0.97 2.34 0.94 - - -1.33 - - - 0.9 -
1.52 -1.1 0.99 -0.03 -0.41 -0.08 1.91 -1.29 -2.09 -3.22 0.05 0.44 -1.27 -1.66 -3.47 -1.83
0.37 0.41 0.38 1.07 -1.05 -0.59 1.09 -0.77 -3.09 -3.68 -0.29 -0.42 0.37 -0.36 -0.49 0.66
- - - 4.0 - - - - - - - - - - - -
-0.02 -1.27 -0.49 -0.18 -0.6 -0.5 0.22 -0.38 -0.89 -0.81 -0.44 -0.35 1.03 0.42 0.7 1.05
- - - - - - 4.0 - - - - - - - - -
1.77 -0.64 -0.47 0.45 -0.97 -0.15 1.12 0.03 -0.65 -0.56 0.03 -0.93 -0.5 -0.66 -1.66 -0.43
0.6 -0.94 0.01 0.41 -0.12 -0.25 0.46 -0.87 0.31 0.16 0.57 0.18 -0.5 -0.41 -0.65 -0.19
0.54 -1.07 -0.04 0.15 -0.14 -0.2 0.6 -0.56 0.07 0.07 0.91 0.34 -0.11 -0.82 -1.45 -0.12
- - - - - - 4.0 - - - - - - - - -
0.15 -0.11 -0.35 0.07 -0.13 -0.15 1.0 -0.24 -0.89 -0.82 0.11 0.31 0.06 -0.06 -0.3 0.27
0.35 -0.17 0.55 -1.65 - - -0.03 -1.73 - - - -1.49 0.84 0.75 2.4 0.72
- - - 2.01 - - - - - - - - 3.58 - - -
0.65 0.26 0.16 0.38 -0.36 -0.29 0.22 -1.0 -0.95 0.27 0.09 0.49 -0.26 -0.25 -0.26 -0.23
-2.58 - -0.01 -0.6 -0.96 0.03 0.85 -1.7 - - - -0.59 3.0 0.9 - -
-0.19 -0.59 -0.29 0.7 -0.6 -0.07 0.39 -0.54 0.03 0.56 0.14 0.43 -0.01 -0.25 -1.04 0.2
-0.34 1.28 0.72 0.07 0.7 -0.75 -0.66 0.38 0.64 -1.03 -3.16 -3.27 0.06 -0.36 -0.35 0.11
0.34 -0.42 0.9 -0.63 0.01 -0.94 0.23 -0.96 -0.37 -0.26 -0.04 -1.21 0.39 0.04 0.37 0.68
-0.61 0.74 0.93 0.5 0.01 -0.94 -0.07 -1.68 -4.79 -3.15 0.66 -0.22 0.46 -0.08 -0.47 0.96
- -4.51 -2.34 -2.59 -3.8 - -2.28 -3.78 - - -3.25 - 1.98 0.59 2.54 1.95
1.05 0.24 -0.2 0.44 -1.04 -0.63 0.65 -0.01 -0.34 0.26 0.49 -0.21 -0.6 -0.38 -1.3 -0.45
- - -3.49 -3.15 - - -3.16 - - - - - 2.82 2.19 0.4 1.47
- 1.53 0.43 1.77 -1.03 -1.18 0.76 - - - 2.13 0.44 - - - -
- - 1.74 2.27 -0.91 1.5 -2.7 -3.73 -0.39 -1.75 -0.12 1.19 - - - -
- - - 3.45 - - 2.35 - - - - - - - - -
0.76 0.4 0.28 0.31 0.02 -0.09 0.09 -0.72 -0.15 -0.49 -0.23 0.87 -0.59 -0.75 -0.74 -0.39
-2.29 - 1.08 1.06 0.73 -0.29 2.61 -2.49 - - -1.27 0.61 - -0.13 - -
0.61 0.57 0.59 0.75 -0.33 -0.44 0.56 -0.9 -0.59 -0.81 -0.03 0.35 -0.84 -0.88 0.0 -0.59
- - - -1.69 -1.9 - -0.38 -3.11 - - - - 2.2 2.24 0.86 1.76
- - - 3.09 1.29 0.14 -1.51 -3.51 - - 0.86 0.75 - - - -
0.28 0.25 0.16 0.19 0.04 0.08 0.31 -0.19 -0.42 -0.59 -0.04 -0.0 -0.12 -0.23 -0.2 0.14
0.86 -0.54 -0.09 0.29 0.16 -0.06 0.27 -0.3 0.17 -0.07 0.48 0.43 -0.81 -0.67 -1.39 -0.25
-5.05 - - -2.89 - - -3.32 -5.89 - - -3.55 - 2.49 2.17 1.46 1.46
-3.47 - - -2.19 - - - - - - - - 2.95 0.85 1.92 1.24
0.47 -0.26 0.06 -0.04 -0.12 -0.1 0.4 -0.21 0.15 0.04 0.42 -0.02 -0.25 -0.36 -0.82 0.11
0.7 -0.3 -0.08 0.37 -0.2 -0.61 0.47 0.07 0.14 0.14 0.35 -0.22 -0.1 -0.69 -0.82 -0.13
0.65 -0.31 0.1 0.1 0.13 -0.82 0.89 0.07 0.11 -0.2 0.62 -0.27 -0.09 -0.77 -1.09 -0.7
0.48 0.09 -0.65 -0.18 -0.27 -1.01 -0.71 -0.5 - -5.85 -1.25 -0.61 1.24 1.13 0.46 1.24
-3.39 -3.14 0.4 2.84 1.34 0.45 - -2.93 - - 0.39 0.96 - - - -
0.79 -0.14 -0.07 0.15 0.11 -0.21 0.36 -0.46 0.31 0.34 0.27 0.49 -0.97 -0.94 -1.1 -0.46
1.9 -3.06 2.03 -0.54 0.86 -4.08 1.7 -0.39 -1.82 -0.6 - -2.23 -3.14 -4.24 - -2.46
0.43 -0.57 -0.27 -0.21 -0.26 -0.6 0.8 -0.73 -0.87 -0.39 0.18 -0.41 0.21 0.56 0.04 0.66
0.76 -0.16 -0.86 0.65 -1.21 -1.25 -0.26 -1.87 -1.69 -1.09 -0.47 -0.74 0.96 0.82 0.99 0.63
0.59 -0.29 0.23 0.73 0.33 0.07 0.43 -1.1 0.16 0.22 0.86 0.46 -1.46 -1.64 -2.07 -1.55
0.88 0.49 -0.01 0.19 -0.29 -0.74 0.58 -0.35 0.08 -0.21 -0.14 -0.23 -0.3 -0.51 -0.15 -0.27
- - - 2.75 - - - - - - - - - 3.22 - -
1.42 - -0.29 1.43 -2.94 -2.51 1.64 -4.86 - - 0.96 -0.27 -1.16 1.5 -1.77 -
- - - - - - 1.7 - - - - - - - 3.67 -
0.01 -0.96 0.18 0.45 -0.33 -0.05 0.51 -0.01 0.4 0.13 1.01 0.26 -0.7 -1.15 -1.35 -0.51
0.15 -0.31 0.01 0.58 -0.19 -0.07 0.44 0.01 -0.27 -0.29 0.08 0.1 0.05 -0.56 -0.2 0.06
-0.36 -2.77 -0.75 -1.59 -6.27 - -0.89 -1.5 - - - - 2.13 2.0 1.14 1.42
-3.25 - - -1.7 - - -2.82 - - - - - 2.39 2.41 0.78 1.68
0.63 -0.82 -0.04 -0.36 -0.29 -0.24 0.73 -0.47 -0.03 -0.08 0.8 -0.41 -0.3 -0.32 -0.38 0.35
1.81 1.52 0.7 1.16 0.82 - -3.44 0.63 - - - - - 0.37 0.12 -
-0.48 -2.3 0.27 0.65 -0.31 -0.6 1.28 -1.05 -0.51 0.38 0.64 -0.15 -2.11 -0.92 - 1.43
- 1.03 - - - - 3.25 - - - - 2.16 - - - -
0.13 -1.4 0.24 0.65 -0.09 -0.15 0.52 -0.5 0.22 0.24 0.98 -0.04 -0.23 -0.94 -1.32 -0.46
- - - -3.82 - - -5.41 - -5.16 - -4.07 - 2.86 1.19 0.32 2.33
- - - 3.02 - - 2.98 - - - - - - - - -
1.67 -6.35 -0.3 0.39 -0.01 0.22 2.22 -3.71 -5.03 -7.77 0.63 0.69 -2.2 -2.06 -5.36 -3.18
-0.16 -2.58 0.17 0.04 -0.34 -0.8 0.34 -0.32 -0.3 0.42 1.31 0.28 -0.02 -0.48 -0.83 0.3
2.01 -0.26 -0.16 0.32 -0.9 -0.85 1.48 -0.08 0.05 0.22 -0.43 -0.15 -2.61 -3.12 - -4.73
-0.39 -1.21 -0.42 -0.3 -0.58 -0.52 -0.04 -0.61 -0.34 -0.56 -0.27 -0.36 0.9 0.62 0.95 0.89
- - - 4.0 - - - - - - - - - - - -
0.75 -0.01 -0.52 -0.05 -2.42 -2.73 -0.04 -0.42 -0.1 -0.46 -0.23 -1.25 0.8 0.89 0.63 0.63
0.16 0.54 0.46 1.03 -0.07 0.14 0.27 -0.69 -0.3 -0.17 0.66 0.27 -1.26 -1.16 -1.57 -1.18
- - - - -0.13 0.74 0.08 - - - - - - - 3.63 -
-1.97 - - 2.14 -1.06 -0.23 0.95 -2.84 -0.62 -0.56 1.06 0.37 - - 1.7 -
0.02 -0.69 0.23 -0.77 -1.22 -1.34 0.53 -0.97 -4.49 -3.43 -0.87 -1.5 1.77 1.26 0.45 0.7
-0.28 0.06 -0.26 0.22 -0.08 -0.28 -0.25 -1.05 -0.34 -0.37 0.06 0.23 0.56 0.17 0.11 0.66
-0.24 -1.04 -0.38 -0.03 -0.43 -0.51 0.31 -0.54 -0.52 -0.28 -0.4 -0.27 0.93 0.84 -0.24 0.91
0.4 0.44 0.2 0.34 -0.13 0.18 0.38 -0.53 -0.47 -0.52 -0.07 -0.01 -0.18 -0.31 -0.77 0.3
0.24 -3.34 -1.23 -0.52 -0.34 -1.81 -0.74 -1.04 -1.49 -0.67 0.58 -0.6 1.19 0.89 0.15 1.61
0.07 -0.55 -0.19 0.2 -0.27 -0.19 0.59 -0.1 -0.25 -0.34 -0.12 -0.32 0.32 0.37 0.12 0.17
1.08 -0.59 0.03 0.23 0.14 -0.14 0.42 -0.28 0.1 0.13 0.31 -0.03 -0.67 -0.95 -0.8 -0.42
0.96 -0.2 0.26 0.84 -0.35 -0.14 0.63 -0.82 0.38 0.59 0.26 0.13 -1.67 -2.42 -1.6 -1.14
0.39 -0.39 -0.59 -0.42 -0.26 -0.55 1.27 -1.02 -2.11 -1.72 -0.11 -0.06 0.58 0.17 -0.04 1.05
- 0.74 - - - - 2.18 -0.38 - - - - 3.18 - - -
0.73 0.36 -0.36 -0.0 -0.71 -0.89 0.25 -0.57 -0.26 0.03 0.16 -0.03 0.28 -0.26 -0.18 0.48
-3.58 - - -1.45 - - - - - - - - 2.21 1.28 1.69 2.4
0.3 -0.76 -0.25 0.1 0.06 0.14 0.76 -0.69 -0.08 -0.19 0.71 0.19 -0.32 -0.41 -0.67 0.04
0.56 -0.43 0.05 0.29 -0.19 -0.13 0.27 -0.58 0.05 0.17 0.43 -0.09 -0.25 -0.27 -0.56 0.07
0.16 1.38 0.8 1.27 0.17 0.5 0.03 -2.79 -3.34 - 1.17 0.8 -4.58 -3.09 -2.6 -
0.45 0.73 0.39 0.92 -0.47 -1.5 1.13 0.4 -4.53 -3.15 0.99 0.24 -1.04 -0.35 - -0.74
0.68 -0.24 -0.23 -0.18 -0.33 -0.56 -0.07 -0.57 0.0 0.01 0.01 -0.39 0.3 0.37 0.04 0.49
0.55 -0.89 -0.4 0.2 -0.23 0.01 0.4 -0.62 -0.12 -0.23 0.39 -0.14 0.43 -0.23 -0.49 0.45
-0.9 - 1.23 -0.76 -0.96 0.47 2.05 0.57 -0.51 - - - - -0.26 1.8 -
-0.05 -0.79 -0.01 0.57 -0.05 0.18 0.31 -0.4 0.25 -0.07 0.67 0.04 -0.21 -0.41 -0.56 -0.3
- - -0.11 3.42 0.79 0.03 -3.42 -5.14 - - 0.19 -1.33 - - - -
- - - - - - 4.0 - - - - - - - - -
- -1.28 1.02 2.87 -1.45 1.41 - -0.56 -0.95 - - 1.04 - - - -
1.07 0.81 0.78 0.48 0.01 -0.21 0.82 -0.44 -0.54 -0.27 -0.49 0.28 -2.41 -2.35 -2.81 -0.52
1.44 0.34 0.52 0.66 -6.22 - 0.8 -4.42 - - - - 1.62 1.25 -1.46 0.48
0.91 -0.06 -0.05 0.03 0.02 -0.25 0.22 -0.67 0.3 0.02 0.04 0.29 -0.45 -0.29 -0.44 -0.47
- - 0.59 3.04 0.14 1.78 - - - - - - - - - 0.79
0.32 0.51 0.57 0.7 0.3 0.25 0.65 -0.75 -0.72 -0.83 0.13 0.37 -0.92 -0.85 -0.98 -1.01
0.16 -0.6 -0.04 0.48 0.15 0.3 0.36 -0.24 -0.02 0.22 0.47 0.0 -0.32 -0.67 -0.99 -0.14
0.46 -0.66 -0.18 0.29 0.03 -0.06 0.29 -0.17 0.01 0.22 0.65 -0.11 -0.11 -0.5 -0.71 -0.22
- - 0.7 3.85 - - - - - - - - - - - -
- - - - - - 0.33 - - - - - - - 3.88 -
-1.69 - 1.21 3.17 -1.02 0.61 - -5.39 - - - - - -2.92 1.15 -
- - - 4.0 - - - - - - - - - - - -
-1.96 1.39 1.49 1.17 0.99 -1.05 0.09 -0.61 -0.45 -1.3 -1.49 -2.92 -2.5 -1.93 0.43 -1.09
- - 1.57 1.93 0.67 0.57 1.88 - - - 1.3 - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.