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Heatmap: Cluster_47 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- -2.08 - - - - - 1.28 1.64 1.11 2.24 1.74 - - - -
- - -3.0 -1.85 -1.65 -1.87 0.62 1.61 1.7 0.5 1.82 1.16 - - - -
-3.91 -1.39 - - - - - -0.02 1.85 1.99 2.25 1.16 - - - -
-4.06 -2.24 0.25 -1.29 -2.09 -0.24 0.92 -3.3 2.81 1.61 -1.52 -0.63 - - - -
-5.97 -7.3 -1.41 -1.49 -3.16 -0.79 0.43 1.28 1.46 0.97 1.99 1.0 -5.47 -7.57 -5.5 -5.01
- - -4.26 -1.69 -0.89 -2.1 0.34 -3.06 2.1 -0.97 2.37 1.82 - - - -
-7.35 -6.1 - -5.26 - -5.63 -5.26 -5.15 -1.57 -1.27 -0.85 -1.28 1.87 0.93 0.76 2.79
- - -2.26 -2.34 -0.97 0.52 0.49 0.52 2.26 -0.03 1.43 0.32 -2.35 - - -0.16
-3.15 -0.88 -1.39 -3.24 -0.79 -2.64 -0.58 -1.44 1.3 0.84 2.11 0.47 -1.9 0.6 0.02 -1.56
-2.32 -2.28 0.2 -1.61 -1.25 -1.37 0.9 0.12 2.5 1.59 -0.53 -0.11 - - -4.6 -
-4.92 -3.77 -0.45 -0.3 -1.51 -0.1 -1.09 0.7 2.19 0.63 0.89 1.58 - - -5.45 -
- - 1.56 0.6 - - - -0.92 3.19 0.92 - - - - - -
-1.59 -4.05 -1.62 -4.09 -3.31 -2.14 0.03 -1.4 1.95 0.54 2.07 0.24 0.94 -0.81 -1.55 -
- -1.24 -1.91 - 0.37 -1.94 -3.59 -2.13 1.28 1.07 1.69 -0.0 - - 2.23 -
- - - - - - -3.1 -4.07 0.13 - 0.81 -0.56 2.07 2.03 1.05 0.95
- -2.68 -3.19 -2.47 -1.49 -2.47 - - 1.99 1.76 2.26 1.53 - - - -
-3.16 -3.49 -1.08 -1.42 -0.63 -1.18 -0.16 -0.09 1.42 0.53 0.93 -0.25 0.69 -0.0 -0.28 0.79
- - - - - -1.44 -2.09 -2.51 0.18 - - -0.83 2.81 1.39 - 1.95
-1.1 -1.02 0.45 -0.33 -0.72 0.14 -0.07 -0.14 1.65 0.59 0.47 -1.39 -0.11 -0.74 -1.1 -0.12
-10.23 - -0.65 -1.02 -1.5 -0.97 -0.33 0.25 2.5 1.55 1.1 -0.14 -3.03 -3.83 - -2.33
-1.53 -1.12 -1.9 -0.99 -2.65 -0.37 -2.91 -1.47 2.56 1.59 0.16 0.45 -1.75 -2.41 -2.54 -0.05
-0.24 0.16 -0.5 -0.6 -0.2 0.35 -2.1 0.94 0.73 0.25 1.53 1.34 -9.3 -4.42 -4.62 -7.1
- - -0.32 0.02 -1.79 0.66 -1.26 0.38 2.41 -1.24 0.97 1.28 -1.0 - - -
0.8 0.45 1.1 - - 0.07 - 0.42 2.29 - 1.8 - - - - -
- - -3.58 - -0.13 1.4 -2.25 -0.2 2.71 0.77 1.27 -0.68 - - - -
-2.72 -3.85 -2.86 -2.91 -4.78 -4.85 -0.65 -0.55 1.3 1.07 1.4 -0.1 1.54 -0.08 -0.43 0.48
- - -0.19 -3.03 -2.06 -1.49 -5.03 -0.31 2.33 0.76 0.73 -0.41 0.48 0.22 -0.12 -0.04
- - - - - - - -5.92 -2.68 - -2.58 - 3.17 1.72 0.62 0.85
-1.87 -0.88 -3.27 -2.49 -3.11 -1.38 -1.74 -0.84 2.67 1.46 0.92 0.18 -1.33 -1.9 -2.03 -1.01
-4.34 - -2.36 - 0.07 -2.37 -0.58 0.65 1.73 1.23 2.27 0.84 - - - -
-4.5 -1.26 -0.93 -2.48 -0.05 -2.85 -0.21 -4.06 1.2 0.12 2.1 0.57 0.37 -0.43 -1.75 0.4
-7.35 -1.51 -2.35 -1.9 -2.08 -0.64 -2.93 -0.94 2.49 0.79 1.93 1.32 - - - -
-1.3 -1.05 -3.68 -3.81 -2.31 -1.32 -2.2 -0.76 1.41 1.42 1.29 0.96 0.02 0.53 -1.09 -0.14
-7.02 -8.57 -3.23 -6.64 -6.83 -5.78 -3.14 -5.68 3.02 1.33 1.64 0.81 -3.19 -4.36 -5.37 -4.51
-0.25 -0.4 -1.0 -1.06 -0.81 -0.03 -1.15 -1.12 1.69 0.8 0.84 0.34 -0.5 -0.57 -0.62 -0.14
-0.06 0.4 - - - - - - 2.58 1.19 2.14 0.12 - - - -
-2.98 -2.42 - - -2.61 - - -2.7 1.92 1.36 1.96 1.59 -0.56 -1.47 -0.83 -0.97
0.67 -0.92 - - - - - - 2.58 1.24 2.1 0.32 - - - -
1.27 -3.31 - - - - - - 2.92 1.26 1.35 -0.04 - - - -
- - -0.94 -0.49 - - - -7.84 2.24 1.42 2.27 1.35 - - - -
- -1.59 - -2.07 -1.65 -1.66 -1.31 -1.44 2.92 1.35 1.01 0.62 -2.32 -4.42 - -3.45
- - -0.39 0.71 -2.99 -1.52 -0.28 -0.84 1.92 1.36 2.09 0.18 - - - -
- - - - -2.41 -4.74 - - 2.17 2.04 2.46 0.71 - - - -
-3.53 -0.81 0.45 0.66 -0.01 -0.11 0.36 0.36 1.65 -0.02 0.62 1.09 -4.67 -6.77 - -3.8
-1.0 -0.03 - - -3.93 -4.68 -1.73 -3.52 1.1 -0.31 1.95 0.47 0.97 0.08 0.71 0.24
-0.18 -0.87 -0.8 -0.71 -0.84 -2.21 -0.66 -1.27 1.35 1.4 1.4 0.25 -0.04 -1.21 -1.7 -0.24
-1.97 -1.54 -0.64 -1.22 -0.46 -0.63 0.68 0.68 2.27 1.31 0.1 0.45 - -6.7 - -7.72
-1.85 -1.23 0.21 -1.07 -0.16 -1.49 -0.45 0.34 1.4 1.52 1.67 0.29 -2.93 -2.95 -2.88 -3.55
-2.06 -1.39 -0.4 -0.59 -0.24 -0.66 -0.29 0.35 2.52 1.4 -0.1 -0.93 -2.93 -3.46 -2.31 -3.05
-2.69 -0.69 -2.31 -1.53 -4.25 -0.39 -1.7 -0.69 2.51 1.4 -0.22 -0.65 -0.39 -1.3 -1.88 0.74
-1.29 -4.03 -0.07 0.64 1.05 0.02 0.48 -2.55 1.92 -1.58 0.77 1.24 - -3.12 - -3.73
-1.08 - -3.33 -1.0 -0.18 0.46 -4.41 -4.97 2.39 1.38 1.9 -0.97 -2.41 -4.5 - -1.95
-0.5 -2.02 -1.21 -1.98 -2.83 -0.36 0.29 0.16 0.67 -1.28 0.61 0.49 1.25 0.53 -1.23 0.93
-0.11 -0.63 -0.61 -0.41 -1.76 -0.12 0.89 0.25 1.51 -0.88 0.82 0.55 -0.32 -1.35 -2.03 -0.52
-5.87 -1.02 -3.93 -1.86 -2.35 -3.03 -3.58 -0.71 1.93 2.07 1.76 1.39 - -6.28 -4.22 -4.31
-1.31 -6.87 0.09 0.31 0.19 -0.35 0.92 -0.07 2.38 0.84 -2.3 -2.38 -2.68 -2.06 -0.86 -2.61
-9.37 -4.79 -0.47 -2.18 -1.11 -1.39 -0.04 -0.2 2.9 0.71 1.14 -0.02 -5.68 - - -6.22
- - - - - - 0.16 -1.7 1.45 - 3.13 - - 1.64 - -
- - 1.99 - - - - - 3.59 - - - - - - -
-3.34 -2.81 -0.69 -0.43 -1.35 -1.07 -0.76 0.08 2.16 1.33 0.83 0.61 -0.83 -1.59 -3.16 -0.79
- - -0.46 -0.38 -2.57 -1.33 -1.31 -0.5 1.74 0.65 0.25 -1.31 1.43 -0.04 -1.24 1.15
- - -0.52 0.01 -3.18 -1.95 -1.32 -0.45 2.64 1.32 0.39 -1.25 0.15 -1.52 -2.15 -0.59
- -3.26 -2.14 -3.57 -1.64 -0.34 -0.57 0.58 2.61 1.61 0.54 0.7 -6.38 - -3.82 -
- - - - - - - - -2.01 - -0.92 - 2.6 0.5 - 2.96
- -9.5 -1.51 -1.32 -2.62 -0.83 -1.38 -0.84 1.78 1.82 2.18 1.02 -6.5 -6.6 -6.59 -6.62
- - -1.71 -1.07 -1.14 -2.8 -0.41 -0.4 2.0 1.66 1.94 0.42 -2.44 -2.22 - -1.4
-0.63 0.38 -1.21 -1.0 -0.38 0.38 -0.48 0.03 1.53 0.38 0.64 -0.27 -0.24 -0.69 -1.27 -0.22
- - -5.23 -5.82 -1.86 -0.83 -3.48 -4.08 2.57 1.3 2.33 0.56 - - - -4.35
-7.79 -0.58 -2.57 -2.7 -3.07 -1.78 -4.89 -1.93 1.72 1.83 2.13 1.62 - -6.2 - -
-2.04 -2.88 -1.34 -1.58 -1.41 -0.95 -4.35 -3.23 2.55 1.92 1.17 0.88 -5.35 -4.13 -4.38 -
-1.15 - - - - -0.24 -0.3 -0.42 1.37 - 1.05 -0.64 2.28 - - 1.57
- -0.14 - - - - - -1.24 2.58 - 1.09 0.98 - - - 2.2
-2.82 - - - - - -5.51 -3.4 2.82 1.31 1.63 -0.03 -0.6 -1.44 -1.95 -0.24
-4.53 -3.53 -1.6 -0.6 -1.08 -1.2 0.73 -0.7 1.74 -3.17 0.32 -0.03 0.77 0.82 -0.0 0.63
-4.41 - -3.38 -1.8 -3.28 -2.38 0.21 -3.79 1.16 1.04 1.7 -0.26 0.93 -0.26 - 1.56
-4.78 -1.17 -2.73 -0.99 -3.09 -1.71 -0.72 -0.27 2.5 1.63 1.58 -1.38 -1.17 -2.26 - -2.16
- - -1.49 0.88 -3.71 0.44 -1.35 0.96 1.77 0.04 0.51 1.13 -0.92 - - 0.54
- - - - - - 0.46 - 2.81 - 2.93 - - - - -
-7.98 -0.7 -2.54 -2.18 -1.22 -2.65 0.61 -0.9 2.01 -0.56 1.84 2.0 -5.23 -6.33 - -
-5.33 -2.37 -1.18 -0.77 -0.01 -1.58 -5.06 -4.0 2.88 0.23 1.3 1.22 - - - -
-0.99 -4.64 -1.41 -0.42 -2.55 -0.85 0.79 -0.65 1.32 -0.05 1.83 -1.21 -0.02 -1.0 -1.24 0.92
-1.08 -0.02 -1.5 -0.93 0.03 -0.42 -0.54 -0.6 1.43 0.61 0.57 -2.27 0.64 -0.42 -0.46 0.69
-8.17 -3.17 -3.53 -2.36 -2.36 -1.03 -1.31 -2.76 2.73 1.86 1.19 0.87 - -7.24 - -7.85
-7.45 - -2.65 -3.78 -2.76 -4.14 - -4.42 2.8 1.97 1.38 1.01 - - - -
-1.71 -1.55 -2.25 -2.56 -2.46 -2.23 -0.97 -0.93 -0.58 -0.75 -0.04 -0.67 1.86 0.9 -0.19 2.11
- - 1.36 -1.69 -0.6 -6.06 -6.69 0.09 3.01 0.54 0.17 -0.6 - - - -3.23
- - - - - - - - 2.27 2.17 1.97 1.47 - - - -
-6.42 -1.44 0.13 0.29 -0.56 -1.71 -0.21 -0.54 2.74 1.3 -0.39 -0.5 -4.34 -5.56 -4.36 -5.05
-2.93 -1.51 -1.97 -0.11 -0.1 0.84 0.55 -0.34 2.2 0.44 1.28 -1.58 -3.23 -1.15 - -3.35
- - 1.25 0.14 -0.83 -3.93 -2.98 0.59 3.15 0.29 - - - - -2.59 -
- - - - - - -1.33 - 2.54 1.6 1.05 - - - 2.22 -
-2.47 0.36 -1.55 -0.74 -1.61 1.57 -1.7 -3.36 2.1 0.52 0.81 0.26 -1.54 -1.05 -3.02 -1.8
- - -1.88 -2.41 -6.07 -4.24 -3.29 -4.86 3.06 1.73 1.46 -0.22 - - - -4.41
-2.5 -2.69 -1.91 -2.0 -2.53 -1.79 -1.88 -0.33 1.66 1.61 1.78 1.27 -0.87 -2.09 -2.78 -0.71
-2.42 -3.25 0.2 -1.19 - -1.57 0.17 -0.79 2.37 0.57 -2.14 -1.27 0.74 1.64 - -
-0.18 -1.04 -0.34 -0.62 -0.38 0.54 -0.25 -0.2 0.99 0.81 0.73 -0.02 -0.07 -0.72 -1.66 0.01
-1.68 -1.07 -0.51 -0.28 -0.96 -0.62 0.28 0.48 1.85 0.51 0.93 0.91 -1.74 -2.05 -2.71 -1.26
- - -2.76 -3.24 - - - -1.08 2.23 1.47 1.44 0.26 0.38 0.43 - 0.33
- - -0.81 -0.47 - -0.84 - -2.49 1.79 0.84 1.88 -0.23 - - 2.07 -
-1.14 -0.9 0.14 -1.52 -1.74 - 1.27 -4.54 1.9 -1.21 1.83 0.72 - -1.05 - -0.08
-4.65 0.37 -0.34 0.18 -0.3 0.98 -2.35 -0.63 2.33 0.5 1.04 -0.92 -6.86 -5.95 -5.88 -4.39
-4.16 -4.92 -2.37 -3.63 -3.51 0.09 -6.63 -0.88 2.95 0.94 0.94 0.77 -4.05 -2.82 - -1.17
- - - -0.3 0.85 - - - 2.5 1.17 2.16 -0.0 - - - -
-2.57 -1.85 -2.65 -1.8 -1.16 -1.13 -1.19 0.77 1.8 1.38 1.89 0.75 -1.93 -2.83 - -2.54
- - - - - -0.95 - -0.82 2.07 - 1.62 0.87 - 0.91 1.98 -
- - -3.76 -3.04 - -0.82 -1.54 -3.56 2.25 1.67 2.05 1.36 - - -2.48 -
-0.38 -0.08 -0.19 -0.02 -0.76 0.1 0.3 -0.19 0.91 0.11 0.78 -0.42 -0.05 -0.33 -1.13 -0.0
-5.44 -4.38 -0.49 -0.3 -4.96 -3.39 -1.59 0.3 2.68 1.13 1.88 -1.12 - - - -
- - -0.54 -0.63 -0.97 -2.22 -1.14 -2.06 2.04 0.69 1.51 1.31 -0.89 -1.4 -0.91 -0.43
-1.53 -0.2 -0.74 0.11 -0.35 -0.02 0.83 -0.31 1.08 0.75 1.08 -0.57 -0.67 -1.12 -0.97 -0.78
-3.73 -3.11 -1.98 -2.33 -1.91 -0.77 0.3 -1.19 1.92 -0.59 2.06 1.72 -2.1 -1.94 -3.08 -1.79
- - -0.75 -0.57 -2.72 -1.21 -3.64 -2.42 1.61 2.06 2.24 0.96 - - - -
-4.75 -3.28 -0.63 -0.43 -0.9 -1.06 - -7.18 1.74 1.82 2.21 0.88 - -4.7 -3.67 -
- - -1.13 0.67 -4.33 1.44 -2.25 -0.4 2.44 0.7 0.95 0.27 - -5.23 - -
-2.87 -2.21 - -3.31 -3.93 -3.68 -1.14 -0.04 1.15 -0.68 0.96 -0.49 1.66 1.28 -0.43 1.1
-5.2 - -4.38 - -3.25 -2.09 -0.19 0.33 0.79 0.43 1.38 0.51 1.12 0.83 0.09 0.41
-6.78 -4.19 -7.43 - - -6.19 - - 2.08 1.87 2.08 1.92 - - - -
-3.56 -1.91 - -1.28 -2.81 -2.97 - -0.64 2.14 0.96 1.72 1.46 - - 0.94 -
-2.5 - - - - - - - 2.29 0.61 0.64 - - 0.18 2.75 -
-7.36 -4.81 -0.17 -0.19 -2.8 -2.14 -2.72 -2.84 1.5 0.35 1.9 0.05 -4.6 -2.37 2.1 -3.14
- -2.56 - - - - - -4.63 2.04 2.21 2.47 0.6 - - - -
- - - - - - -0.5 -1.03 0.5 0.56 1.12 -0.59 1.55 0.93 0.35 1.58
- -7.61 - - - - - -7.41 -5.12 - -4.99 - 2.15 1.31 1.8 2.47
- - -1.89 -1.1 - - 0.58 -0.8 1.95 -0.21 0.59 0.31 0.53 0.39 0.0 0.98
-2.33 -5.55 -2.55 -2.7 -2.02 -1.96 -1.43 -0.91 1.23 -0.31 0.29 0.1 1.56 1.39 -0.66 1.26
-9.55 -2.25 -2.89 -2.58 -3.06 -1.72 0.5 -0.84 2.04 -0.86 2.23 1.9 -5.84 - - -
- - - - - 1.98 - - 2.54 - 2.65 - - - - -
- -4.24 -2.77 -3.29 -2.02 -0.53 -0.28 -0.2 1.64 1.58 2.21 1.13 -4.23 -6.32 -6.25 -3.77
- -5.3 -3.03 -1.81 -1.69 0.05 -1.09 -1.98 1.86 1.76 2.07 1.18 - -9.05 - -
1.03 -0.69 -1.56 -1.72 -1.55 -1.79 -2.01 -3.74 2.54 -0.19 1.22 0.64 - -3.32 0.07 -
- - - - - - - - -1.36 - -1.26 - 1.9 1.81 1.88 2.1
- - -5.57 - - -5.6 -2.33 -2.9 1.51 1.72 2.36 1.71 -1.07 -2.75 - -1.19
-2.82 - -3.75 -3.84 -3.03 -1.96 -8.42 0.72 2.89 1.65 1.3 -0.72 - - -3.86 -
-5.74 -10.29 -1.3 -1.18 -1.85 -0.58 0.31 1.13 1.87 -0.21 2.17 0.38 -2.7 -3.36 -5.57 -2.53
- -0.59 - - - -0.98 - - 2.12 1.6 2.26 1.41 - - - -
-2.52 -2.27 -3.73 -1.81 -0.27 -3.76 -3.4 -6.38 2.4 1.15 1.4 1.64 - -1.29 -0.84 -
-5.15 - -5.4 -3.07 -5.26 -1.74 - -2.79 2.33 1.78 2.3 0.8 -3.48 -2.99 - -
-1.56 -0.72 -4.96 -5.73 -4.49 -3.07 -1.15 -1.22 1.03 -1.09 0.85 0.16 1.54 0.72 -0.13 1.61
-6.68 -6.23 -1.05 -1.92 -3.04 -3.66 0.15 1.12 1.64 0.11 2.27 0.72 -1.0 -1.7 -4.67 -2.05
-2.32 -0.5 0.47 0.45 -1.65 -0.56 -1.49 -0.69 2.65 1.01 -0.93 -0.39 -2.55 -1.64 -3.89 -1.99
-2.93 -5.46 -1.84 -2.8 -1.94 -1.92 0.42 -0.04 1.32 0.05 1.36 -0.86 0.85 0.53 0.34 0.53
- - - - - - - - -1.11 - -2.02 -2.13 2.32 0.37 1.12 2.72
-1.56 -1.26 - - - - -1.29 -0.12 0.75 -1.32 0.81 0.83 0.82 1.28 1.44 0.5
- - -1.68 -1.01 - -1.11 - -2.29 1.03 -1.42 1.94 0.83 0.54 0.82 0.19 1.09

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.