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Heatmap: Cluster_301 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.42 0.22 -1.39 -1.23 -0.87 -0.81 0.38 0.62 0.6 0.38 0.47 0.43 -0.43 -0.31 -0.26 -0.3
0.54 0.46 -0.87 -0.66 -0.3 0.08 -0.4 -0.2 1.19 0.93 0.3 -0.1 -1.0 -1.1 -0.83 -0.74
0.09 0.5 -1.1 -0.88 -0.84 -0.76 -0.19 -0.7 0.76 0.67 0.84 0.65 -0.31 -0.43 -0.33 -0.21
-0.09 -0.09 -3.85 -1.71 -4.72 -2.71 -0.29 -0.13 1.11 0.94 1.18 0.0 0.52 -0.22 -0.96 0.75
0.13 0.57 -1.32 -1.38 -0.79 -0.59 0.32 -0.27 0.68 0.92 0.4 0.51 -0.15 -0.57 -0.72 -0.16
0.49 0.13 -1.24 -1.28 -0.82 -0.72 0.43 0.02 0.6 0.17 0.38 0.46 -0.2 -0.22 0.02 0.1
0.41 -0.88 -2.24 -2.23 -2.12 -1.74 0.5 0.22 0.61 0.24 0.66 -0.06 0.68 0.11 -0.4 0.93
0.37 0.09 -1.45 -1.18 -1.26 -1.0 0.57 0.13 0.62 0.56 0.56 0.5 -0.14 -0.44 -0.57 0.15
0.37 0.27 -1.57 -1.54 -0.79 -0.44 -0.13 0.2 0.66 0.58 0.33 0.26 -0.17 0.01 0.21 -0.18
0.15 0.49 -2.04 -1.96 -1.7 -1.39 0.64 0.67 0.46 0.69 0.63 0.14 -0.1 -0.05 -1.14 0.21
0.45 0.25 -0.74 -1.03 -0.62 -0.21 -0.41 -0.4 0.74 0.37 0.16 0.09 0.07 0.07 0.44 -0.47
0.37 0.91 -1.69 -1.22 -0.49 -0.39 0.03 0.11 0.82 1.18 0.79 0.36 -1.47 -1.24 -1.85 -1.28
0.75 -0.02 -0.76 -1.0 -0.67 -0.05 -0.32 0.32 0.24 -0.0 0.23 0.29 -0.18 -0.19 0.06 0.3
0.3 0.15 -1.55 -0.98 -0.84 -0.24 0.31 -0.8 0.58 0.72 0.4 0.05 0.18 -0.3 -0.41 0.48
0.4 0.55 -1.19 -0.91 -0.87 -1.06 0.09 0.03 0.56 0.63 0.99 0.72 -0.41 -0.96 -1.33 -0.29
0.67 0.18 -2.34 -1.87 -1.95 -1.15 -0.28 -0.2 1.2 1.03 1.12 0.95 -0.73 -1.5 -1.42 -0.67
0.62 0.36 -1.39 -0.66 -0.8 -0.91 0.44 -0.13 0.51 0.62 0.74 0.31 -0.51 -0.6 -0.72 -0.09
0.63 0.37 -1.02 -1.58 -1.32 -0.06 -0.15 0.19 0.74 0.21 -0.23 0.42 -0.63 0.34 0.02 -0.02
1.32 0.53 - -1.09 -1.09 0.05 -2.97 -1.82 1.61 1.5 0.56 0.42 - -3.5 -1.18 -1.15
0.34 -0.01 -1.22 -1.1 -1.25 -0.89 -0.1 0.17 0.72 0.63 0.15 -0.66 0.44 -0.02 -0.35 0.82
0.51 0.54 -3.37 -3.75 -3.65 -3.07 -2.09 0.31 0.87 1.11 0.07 -0.41 0.65 0.69 -0.29 0.58
0.41 -0.39 -1.44 -1.28 -1.23 -0.84 0.24 -0.11 0.57 0.12 0.44 0.05 0.45 0.06 -0.25 0.85
0.75 0.36 -0.62 -0.48 -0.49 -0.66 0.02 -0.61 0.56 0.05 0.48 0.14 -0.19 -0.59 -0.13 0.24
0.33 0.37 -0.88 -0.86 -0.97 -1.07 -0.41 0.6 0.83 0.95 0.38 0.15 -0.18 -0.63 -0.94 -0.11
0.61 0.12 -3.21 -2.87 -2.38 -2.07 0.18 -0.32 0.45 0.23 0.51 -0.02 0.78 0.44 0.16 0.7
0.69 0.37 -0.89 -1.16 -0.56 -0.55 0.36 -0.31 0.57 0.87 0.63 0.35 -0.25 -1.2 -1.22 -0.31
1.72 0.47 - -3.66 - -5.02 - - 2.43 1.25 1.36 -0.22 - - - -
2.06 0.73 -7.6 -5.27 -6.47 -7.64 -2.92 -4.26 1.98 0.79 1.64 0.08 - -5.79 -4.72 -4.81
0.51 0.1 -0.99 -0.53 -0.08 -0.37 0.17 -0.44 0.58 0.29 0.45 0.43 0.01 -0.5 -0.64 -0.09
-0.2 0.12 -1.54 -0.84 -0.65 -1.22 0.07 0.38 0.75 0.86 0.49 -0.28 0.29 -0.12 -1.26 0.52
-0.46 -0.34 -2.32 -2.84 -0.91 -1.46 -0.54 -0.51 0.14 0.2 -0.25 -0.05 1.22 0.99 0.59 0.98
0.23 -0.22 -2.13 -2.35 -2.04 -1.78 0.23 -0.86 0.48 0.9 0.06 -0.22 0.6 0.53 0.71 0.61
0.41 0.27 -1.25 -1.1 -0.82 -0.8 0.14 0.85 1.04 0.97 0.32 0.05 -0.83 -1.04 -1.1 -0.46
0.23 1.1 -3.62 -2.6 -3.21 -0.18 0.74 -0.54 1.01 1.08 0.84 0.55 -1.12 -1.61 -2.04 -0.59
-0.11 0.04 -0.7 -0.79 -0.18 -0.53 -0.46 -0.07 0.47 0.6 0.31 -0.38 0.25 0.23 0.06 0.35
-0.13 -0.7 - - -4.88 -5.63 -3.02 -0.61 0.81 0.39 -0.29 -1.71 1.61 1.38 -0.54 1.64
0.25 -0.14 -3.67 -4.13 -1.67 -1.9 -0.95 -0.82 0.67 -0.1 0.34 -0.26 0.99 0.98 0.77 0.85
-0.21 0.16 -1.3 -1.11 -0.58 -0.44 -0.19 -0.1 0.29 0.46 0.26 0.09 0.84 0.14 -0.46 0.53
0.26 -0.12 -1.71 -1.73 -1.22 -1.2 0.37 0.16 0.5 0.54 0.63 0.42 0.28 0.22 -0.84 0.39
0.13 0.1 -1.26 -1.18 -0.83 -0.44 -0.03 -0.19 0.36 0.39 0.17 0.29 0.29 0.38 -0.03 0.47
1.26 - -4.28 -4.94 -5.16 -1.3 -2.15 -1.9 1.9 1.31 1.2 -1.36 -0.21 -0.78 -0.82 0.74
0.14 0.1 -2.33 -1.61 -0.15 -0.47 0.58 -0.52 0.89 0.66 0.82 0.75 -0.52 -0.68 -1.52 -0.09
0.37 0.04 -2.22 -1.62 -1.41 -1.43 0.06 -0.28 0.29 0.64 0.38 -0.13 0.92 0.78 -0.2 0.07
0.04 0.09 -1.49 -1.2 -0.55 -0.53 -0.06 -0.19 0.71 0.45 0.85 0.37 0.07 -0.02 -0.5 0.09
0.22 0.2 -1.97 -1.49 -1.48 -0.8 -0.15 -0.28 0.22 0.39 0.15 -0.23 0.42 0.3 0.76 0.78
0.23 0.57 -2.7 -2.18 -1.92 -2.08 -1.32 -1.42 0.76 -0.07 0.65 0.26 0.31 0.93 0.55 0.74
0.44 0.31 -3.89 -2.28 -3.57 -3.57 -0.93 -0.06 1.0 0.64 1.07 0.45 0.57 0.0 -0.81 0.48
0.44 0.23 -2.16 -1.97 -1.68 -1.06 0.3 0.37 0.9 0.79 0.85 0.52 -0.2 -0.35 -1.44 -0.3
0.49 -0.1 -1.44 -1.11 -1.02 0.14 -0.7 -1.67 1.36 0.39 -0.42 -0.73 0.42 0.26 -0.32 0.81
0.36 -0.13 -2.18 -1.77 -1.53 -1.42 0.03 0.06 0.06 0.03 -0.06 -0.28 0.76 0.89 0.22 0.96
0.17 -1.04 -0.39 -0.19 -1.26 -0.39 -0.7 -0.85 0.92 0.73 0.64 -0.09 0.58 -0.1 -0.79 0.41
0.5 0.1 -1.4 -1.42 -0.22 -0.17 -2.11 -0.21 1.05 0.91 -0.61 -0.76 -0.03 -0.15 1.08 -0.44
0.46 0.43 -1.6 -2.73 -1.28 -1.38 -0.09 0.38 0.63 0.8 0.61 0.47 -0.53 0.03 0.08 -0.32
0.3 0.46 -1.15 -0.87 -0.74 -0.53 0.29 0.35 0.6 0.64 0.57 0.55 -0.52 -0.81 -1.01 -0.28
-0.82 -0.31 -1.66 -2.27 -0.92 -0.71 0.08 -0.23 0.68 0.54 0.53 0.32 0.85 0.46 -0.04 0.22
-0.25 0.15 -1.93 -1.74 -1.56 -0.99 -0.01 0.05 0.46 0.53 0.32 0.01 0.32 0.47 0.03 0.91

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.