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Heatmap: Cluster_48 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-0.17 1.05 -0.64 -0.42 -0.62 -0.38 -1.52 -1.84 -2.57 -2.51 -2.62 -3.8 1.31 1.7 -0.25 1.29
-0.41 -1.04 -1.01 -1.27 -1.86 -1.03 -0.84 -0.72 -3.4 -5.45 -1.42 -2.25 2.03 1.06 -0.39 2.09
- 2.85 1.39 -0.6 1.79 1.04 - - - - - - - - - -
-0.18 1.07 2.19 -0.65 1.15 0.99 - -0.05 - - - - - -0.16 - 0.81
0.89 2.73 0.96 -0.03 0.88 0.83 -2.62 -1.21 - - - -1.38 - - - -
0.61 0.57 - -3.41 -0.81 -1.77 -0.51 -0.26 -0.35 -2.51 -0.6 -1.58 1.49 0.88 -1.86 1.85
0.54 1.22 -1.65 -2.05 0.48 0.06 0.6 0.09 -1.51 -1.68 -1.15 -2.42 1.02 0.45 -0.42 0.27
1.02 0.78 -1.92 -0.96 -0.78 -0.04 -0.24 -0.3 - -5.76 - - 1.56 0.92 0.32 1.11
1.69 2.47 -1.08 -0.93 1.39 1.69 -5.84 - -3.6 -4.54 -2.18 - - - - -
0.78 1.05 -1.66 -1.11 -0.1 -0.1 0.42 -1.02 -1.0 -1.31 -0.68 -1.53 0.42 -0.14 0.11 1.35
0.92 1.02 -0.69 -0.3 -0.06 0.1 -0.35 0.06 - - - - 1.01 0.4 0.41 1.09
0.62 0.8 -0.86 -0.8 0.13 -0.15 0.08 -0.7 -0.39 -1.27 -0.69 -1.76 0.81 0.28 0.14 0.83
-3.2 0.12 -1.86 -1.14 -2.0 -1.88 -4.1 -3.38 - - - - 2.55 1.65 0.76 1.43
0.59 0.77 -0.31 -0.79 0.19 -0.06 -0.01 -0.48 -0.82 -0.92 -1.71 -0.66 0.51 0.88 0.28 0.08
0.76 1.52 0.38 -0.04 0.25 0.65 -1.66 -1.79 -1.43 -1.16 -1.45 -0.82 0.31 -0.41 -0.48 0.42
0.4 2.68 1.43 0.03 -0.19 1.25 - - -1.3 - - - - - - -0.11
-0.98 1.41 0.66 -0.17 0.95 0.46 -1.18 -0.07 -0.35 -0.88 -1.84 - - -0.1 0.38 0.87
0.06 1.39 -0.82 -1.02 -0.21 -0.08 -4.09 -1.54 -4.99 -3.23 -1.69 -1.14 1.06 1.05 0.47 1.39
1.21 2.55 - 0.22 1.98 1.45 - - - - - - - - - -
1.4 2.55 - - 1.87 1.25 - -4.37 -1.15 -0.09 - - - - - -
0.21 0.63 -0.82 -0.73 -0.38 -0.09 -0.58 -1.64 -2.12 -1.14 -1.2 -0.66 1.47 0.64 0.02 1.22
0.49 1.74 0.01 0.09 -0.34 -0.73 -1.3 -1.75 -5.67 -5.04 -0.56 -0.32 0.88 0.25 -0.57 0.88
0.51 1.75 0.57 0.7 0.52 0.48 -1.6 -0.4 -1.65 -1.73 -1.13 -1.28 -0.12 -1.16 -1.0 -0.27
- 1.53 - - 0.21 - - - - - - - 3.58 - - -
-1.68 0.89 0.71 - 0.84 0.67 - -0.36 - - - - - - 3.01 -
0.54 1.21 -0.46 -0.52 - -2.47 -3.14 -2.37 -1.82 - - - 0.44 1.15 2.0 1.31
0.96 0.54 -0.93 -1.18 0.0 -0.81 0.44 -0.79 -1.94 -3.05 -0.02 -0.73 0.98 0.56 0.37 0.5
0.67 0.72 -0.48 -0.63 0.46 -0.46 -0.39 -0.65 -0.8 -1.44 -0.33 -1.38 1.08 0.38 -0.81 0.84
2.33 2.39 -4.77 -4.42 1.25 1.48 - - -4.15 -4.09 -4.05 - - -3.97 -1.9 -
2.01 2.09 -2.54 - 0.89 0.14 -4.22 - - -2.86 - -1.35 0.36 -0.15 -0.67 0.23
0.8 1.39 -0.49 -0.23 0.88 0.25 -0.4 -1.54 0.02 -0.04 -0.49 -1.11 -0.01 -0.51 -1.28 -0.58
2.28 2.78 -3.03 -3.7 0.82 -0.56 - - -3.44 - - -3.54 -1.33 - -0.94 -0.9
-2.04 -2.24 -3.13 -2.92 -2.73 -3.26 -2.92 -2.71 - - -6.5 -8.19 1.82 1.97 1.94 1.79
0.52 1.84 0.15 -0.46 0.42 0.14 -1.02 -2.44 -3.45 -4.98 -1.62 -1.88 -0.1 0.51 0.75 0.36
-0.51 2.39 -0.6 0.07 1.22 1.47 0.05 -1.29 -0.4 -0.93 -0.89 - - - - -
-1.09 1.31 1.98 - 0.51 1.37 - - - - -0.49 - - -0.37 - 1.85
-0.59 -0.46 0.18 -1.19 -0.44 -2.07 -0.96 -0.39 -2.23 -4.17 -1.51 -2.04 1.64 1.97 -1.19 1.29
-0.8 1.71 -1.26 - 0.83 0.33 - - -0.64 - -0.54 - 0.62 - 1.59 1.5
0.22 1.36 -0.14 0.32 -0.29 0.55 -2.44 -1.22 -2.54 -3.48 -1.44 -2.38 1.15 0.66 -0.2 0.79
0.47 0.86 -0.51 -1.49 -0.29 -0.22 -1.34 -1.88 -7.24 - - - 1.36 1.19 1.04 1.31
0.23 0.6 -2.39 -2.39 -0.99 -1.29 -0.67 -3.2 -0.39 -1.72 -1.38 -3.65 1.79 1.06 0.06 1.66
-0.37 -0.14 -2.99 -3.48 -1.37 -1.81 -2.05 -2.23 -4.82 -5.35 -2.31 -2.96 1.84 1.82 0.6 1.99
-0.63 0.27 -1.32 -0.59 -1.24 -1.8 -3.27 -1.87 -3.52 -3.47 -1.83 -3.52 2.45 1.3 -0.28 1.43
0.09 0.57 -4.91 - -0.27 -0.62 -0.58 -0.29 -0.85 -1.76 -1.12 -1.54 1.36 1.04 0.68 1.36
1.51 1.88 -2.24 -3.27 0.25 -0.15 -2.68 -3.56 - - -3.88 -6.1 0.4 0.94 1.12 0.41
-0.01 0.62 - -2.19 -2.39 -1.55 - - - - -1.85 - 0.98 3.0 0.37 0.27
-3.41 -2.18 -2.55 - -2.92 -4.16 -4.81 -4.28 - - - - 1.98 2.12 1.45 2.08
-1.84 -0.86 -2.14 -1.47 -1.39 -2.04 -2.72 -2.12 -2.17 -2.97 -3.39 -3.69 1.82 1.99 1.09 1.77
0.87 1.49 -0.62 0.81 0.87 0.12 -2.1 -5.08 -1.27 -1.21 -1.18 -2.87 0.07 0.98 -0.54 -0.64
2.08 2.4 -3.29 -2.95 -3.17 1.81 -2.38 -0.21 - - - -2.71 - -0.48 - -0.51
-3.27 -1.13 -3.44 -3.52 -1.73 -3.46 -4.12 -4.41 - - - - 1.64 2.1 1.9 1.87
1.93 2.6 -0.21 -0.88 1.27 -0.23 - -4.88 - - -1.56 -1.67 -0.32 - - -
0.63 1.57 -0.03 -1.94 -0.27 0.27 -1.07 -0.25 - - - - -0.95 0.28 1.35 1.39
-0.44 0.98 -1.14 -0.85 -0.76 0.37 -2.44 -0.76 -2.97 - -2.23 -1.79 1.65 1.48 -0.14 1.11
1.27 1.31 - - 0.75 -0.95 - - - -0.26 - - - 1.45 - 2.42
1.24 1.57 -0.82 -0.2 -0.69 -0.03 -0.01 -0.08 -3.42 -1.16 -3.64 -2.94 0.46 1.0 -1.43 0.28
2.32 2.28 -2.36 0.97 -0.23 1.19 -2.04 -1.56 - -1.73 - - - - - -
1.36 1.4 -0.14 0.19 0.53 -0.01 0.2 -0.45 -0.13 -0.9 -1.43 -1.32 -0.7 -1.14 -0.99 -0.66
1.66 1.83 -0.43 -1.26 0.43 0.9 - -4.26 - - - - 0.63 0.67 - 0.77
0.56 0.17 -1.09 -2.4 -0.45 -0.04 -0.23 -1.24 -1.73 -3.06 -2.92 -2.55 1.27 1.51 1.34 0.33
0.19 3.43 2.02 - - - - - - - - - - - - -
1.0 1.64 -0.95 0.08 -1.51 -0.28 -2.63 -2.54 -1.78 -1.3 -1.27 - -0.05 1.03 0.93 0.83

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.