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Heatmap: Cluster_70 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
3.72 -1.47 -2.9 -3.89 - -2.94 -2.2 -4.71 - -4.59 -4.55 - -2.31 -1.41 -2.34 0.02
3.34 -2.86 0.59 -1.88 -1.51 -1.66 -3.89 - -2.62 -2.56 -2.52 -1.63 - - 1.25 -
4.0 -7.02 - - - - - - - - - - - - - -
3.93 - -3.22 -5.69 - -1.67 - -8.69 - - - - - - -1.56 -
3.71 1.06 -3.25 - - -3.29 -4.93 -5.9 -4.69 - -2.27 -3.11 -3.34 - - -3.46
3.9 -7.09 - - - - - - -0.15 -3.36 -5.91 - - -5.75 -3.68 -
-1.68 - - - - - - - - - - - - 2.89 - 3.05
2.61 -0.22 -4.65 -4.87 -4.89 -3.62 - -3.52 -2.21 -3.43 -8.44 -8.55 0.39 0.82 1.94 0.62
4.0 - - - - - - - - - - - - - - -
1.01 - - - - - - - - - - - - 3.81 - -
3.06 -2.51 -7.94 -9.94 -7.13 -10.31 -10.94 -0.64 -4.35 -5.18 -8.61 -5.71 1.01 0.69 0.07 1.05
3.56 0.97 - - - -4.73 -6.37 - -4.12 - - - -0.61 -1.88 -2.81 0.09
3.89 -1.83 -4.75 -4.42 -1.45 - - -1.7 - - - - -2.87 - - -
3.58 0.71 -4.45 -4.92 -2.12 -3.04 -5.93 -4.55 -0.44 -0.87 -3.79 -3.24 -4.34 -5.44 -4.37 -1.46
2.6 -0.37 -1.79 -3.27 -1.88 -2.05 -2.69 -1.52 -2.04 -3.97 - - 0.77 0.47 -0.13 1.78
2.28 -1.79 -1.37 -1.95 -1.15 -2.29 -1.59 -0.89 -3.04 -1.49 -2.46 -5.37 1.38 0.5 0.43 1.39
0.5 - - - - - - - - - - - 2.34 3.25 - -
2.57 -0.56 -3.33 -3.38 -3.83 -2.86 -4.47 -1.78 -4.96 -4.38 -7.08 -6.19 1.49 0.35 0.15 1.74
4.0 - - - - - - - - - - - - - - -
0.23 - - - - - - - - - - - - - 3.89 -
3.83 0.49 -7.04 - -4.77 -3.94 - -9.43 -7.79 - -8.7 -8.8 -4.13 -4.46 -6.47 -2.67
3.87 0.47 - - - - - -7.8 - - - - - -5.92 - -
1.23 -3.18 - - -4.81 - - -2.6 - - - - -0.22 1.05 3.27 -0.34
3.56 -0.2 -0.62 - - -1.65 - - - - - - - - 1.26 -
4.0 - -8.33 - - - - - - - - - - - - -
2.83 -1.26 -0.99 -2.47 -0.86 -1.1 -1.57 -2.42 -4.04 -3.44 -1.91 -1.28 0.62 0.33 0.37 0.42
3.28 -1.66 -1.77 -2.44 -1.49 -2.1 -2.22 -1.21 -1.49 -0.66 -2.1 -1.57 -1.03 -0.9 0.06 -0.74
2.01 -1.89 -1.9 -1.71 -3.38 -3.96 -3.24 -4.89 -7.14 -5.64 -8.27 -5.15 1.45 1.03 1.6 1.57
1.48 - - - - - - - - - - - - - 3.72 -
-0.77 - - - - - - - - - - - - - 3.95 -
-1.49 - - - - - - -4.98 - - - - 1.93 1.87 2.35 1.61
4.0 - - - - - - - - - - - - - - -
-2.56 - - - - - - - - - - - 2.48 - - 3.36
2.77 - -2.28 -4.11 -4.33 -5.48 - -3.23 - - - - 1.54 1.78 -0.57 0.79
4.0 - - - - - - - - - - - - - - -
3.92 -0.25 - - - - - - - - - - - - - -
4.0 - - - - - - - - - - - - - - -
-0.01 -6.05 - - - - - - - - - - 1.25 -3.19 - 3.65
3.87 - -2.76 -4.01 -1.89 -2.06 - - - - - - - - -1.46 -1.56
3.47 - - - - - - - - -0.22 - - - - 2.03 -
3.85 -1.5 -1.9 -3.14 -3.78 - -5.16 - - - - -4.9 -1.99 -2.35 -2.31 -3.7
3.86 - - - - - - - - - - - - - 0.61 -
4.0 - - - - - - - - - - - - - - -
3.99 -5.25 - - - -8.6 - - - - - - - - -4.68 -
1.11 -6.74 -5.79 -7.46 -5.66 -6.83 -8.46 -1.8 - - - - 1.46 2.74 1.23 0.79
2.96 - - - - - - - - - - - - 3.04 - -
3.96 -4.27 -4.0 - -2.42 -2.86 - - - - - -5.43 - - - -
3.88 0.39 - - - - - - - - - - - - - -
3.77 -1.93 - -3.4 -4.01 -4.19 - 0.1 -0.78 -2.78 -5.07 -3.59 - - - -
3.82 -2.52 -2.94 -2.51 -3.66 -2.48 -4.33 -4.4 -5.6 -5.31 -6.09 -7.19 -2.44 -2.43 -2.86 -1.25
2.12 -3.68 -3.05 -3.57 -4.09 -4.05 -2.37 -2.06 -5.65 -5.59 -3.16 -1.34 0.95 0.61 0.22 2.49
4.0 - - - - - - - - - - - - - - -
3.56 1.1 -5.41 - -5.28 - - -1.16 -2.24 -3.76 -4.73 -2.51 -2.5 -3.59 -2.52 -0.62
4.0 - - - - - - - - - - - - - - -
2.89 -2.3 -4.01 - - - - -4.68 - - - - 0.49 1.45 2.05 -
4.0 - - - - - - - - - - - - - - -
3.9 - - - - - - 0.14 - - - - - - - -
3.34 -2.08 - - - - - -0.77 -2.86 - - - 0.04 1.17 0.43 -1.67
3.98 -4.94 - - - -7.71 - -8.75 - - - - - -3.54 -4.79 -5.89
4.0 - - - - - - - - - - - - - - -
4.0 - - - - - - - - - - - - - - -
3.74 -0.84 - - - - - - -0.09 - - - - 0.21 - -
3.55 -3.71 -3.37 -4.26 -2.65 -2.89 -1.39 -2.79 -3.02 -4.54 -2.05 -1.62 -0.35 -0.5 -1.7 -0.58
3.91 - -3.15 - - - - - - - - - - - -0.27 -
4.0 - - - - - - - - - - - - - - -
3.98 - - - - -4.42 - - - - - - - -2.57 - -
3.97 -2.59 -6.53 -8.2 -8.4 - -9.2 - -5.63 - - -7.96 -5.62 -6.72 -5.65 -5.16
4.0 - - - - - - - - - - - - - - -
4.0 - - - - - - - - - - - - - - -
3.58 - - - - -1.82 - -0.07 -3.21 -2.15 -1.54 - -1.86 -0.37 0.11 -
3.72 - -0.65 -0.32 -2.1 -3.27 -1.4 -3.37 - - -1.58 -3.27 -2.9 - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.