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Heatmap: Cluster_189 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-7.28 -4.09 -0.05 -0.65 -2.13 1.3 -3.64 -0.95 2.81 1.62 -2.0 -0.56 -6.07 -7.58 - -6.6
-2.8 - - -1.92 -1.64 0.39 -3.66 -1.95 1.96 -0.24 -3.9 -2.42 2.29 0.05 0.63 0.21
- - - - - -0.42 - -0.0 3.42 - -0.66 - - - 1.55 -
-4.36 -2.5 -3.38 -0.08 -1.92 2.14 -5.59 -4.19 3.21 -0.96 -2.49 -3.78 - - - -
- - - - - - -3.29 -3.29 3.96 - - - - -1.8 - -
- - - - - - - - 4.0 - - - - - - -
- - - - - - - - 4.0 - - - - - - -
- - - - - - - - 1.85 - - - - 2.06 - 3.04
-1.64 -0.45 -3.98 -1.01 -1.02 0.66 -7.35 -3.13 2.41 -0.1 -1.89 -2.95 0.26 -0.23 -1.2 1.62
-8.55 -5.72 -2.31 -2.54 -2.46 0.82 -4.89 -2.98 3.41 -0.55 0.55 -0.44 -9.49 -10.58 -7.51 -
- -2.72 -5.13 -4.05 -3.82 1.63 - -5.82 3.56 -0.58 - -3.94 - - - -
-4.32 0.13 -4.08 -2.16 -1.79 1.38 -2.43 -2.62 3.04 1.12 - -1.51 - -4.27 -1.2 -3.3
- - -5.28 - -5.15 0.34 -2.14 -0.2 3.65 -0.93 -3.01 -3.11 -3.37 - - -2.49
-0.44 -1.34 -1.01 -0.75 -0.73 -0.08 -0.17 0.09 1.05 0.07 -0.01 -1.39 0.89 0.08 -0.73 1.18
-0.94 -2.27 -0.47 -0.18 -0.99 1.05 0.5 0.14 2.15 0.33 -0.09 -1.36 -1.3 -1.47 -2.86 -0.63
- - - - - 2.15 - - 3.2 1.25 - - - - - -
- - - - - - - -2.54 3.98 - - - - - - -
-4.97 -2.98 -5.52 -3.77 -3.18 -7.13 -2.0 0.22 3.72 -0.45 -4.42 -2.52 - - -4.22 -
- - - - - - - - 4.0 - - - - - - -
- - - - - - - - 4.0 - - - - - - -
- - - - - - - - 4.0 - - - - - - -
-0.29 -0.65 -1.16 -0.36 -1.01 -0.54 0.25 0.31 1.32 -0.06 0.18 -1.43 0.67 -0.29 -0.77 0.8
- - - - - - - - 4.0 - - - - - - -
- - - - - - - - 4.0 - - - - - - -
-0.27 -3.6 -1.06 -0.93 -0.86 0.03 -0.11 0.07 1.18 0.85 0.1 -0.86 0.75 0.12 -0.37 0.4
- - - - - - - - 1.42 - - - - - 3.74 -
- - - - - - - - 1.43 - - - - - 3.73 -
- - - - - - - - 4.0 - - - - - - -
- - - - - - - - 4.0 - - - - - - -
- - - - - - - - 4.0 - - - - - - -
- - - - - - - - 4.0 - - - - - - -
- - - - - - - - 4.0 - - - - - - -
- - - - - -0.96 - - 3.68 -0.27 -0.05 -0.17 - - - -
- -4.26 -1.3 -1.03 0.21 0.82 -5.54 0.67 3.19 -1.09 -1.81 -0.69 - -7.75 -5.09 -
- - - - - - - - 4.0 - - - - - - -
-4.36 -4.1 -3.58 -3.24 -2.44 - - -1.64 3.64 0.22 - - - -2.76 - 0.54
-2.23 - - - - -0.15 - -1.24 3.48 -0.71 - - - 0.44 - 0.42
- -2.69 - - -0.42 -1.17 - - 3.8 -0.5 - - - - - -
- - - - - - - - -2.07 - - - 1.51 2.18 - 3.07
- - - - - - - - 4.0 - - - - - - -
-7.89 -4.34 -2.72 -1.47 -0.82 -0.0 -1.43 0.62 3.37 -0.22 -1.02 -1.79 -8.0 -9.09 - -8.12
- - - - - - - -2.48 3.92 -0.58 - - - - - -
- - - - - - - - 3.69 -0.57 - - - - 0.7 -0.4
- -6.83 -6.13 -1.2 - 0.7 -4.23 -2.47 3.6 -0.66 -1.96 -0.67 - - - -4.36
- - - - - - - - -0.7 - - - 1.58 2.07 - 3.04
- - -3.03 - 0.08 - -2.12 -2.56 3.71 0.24 - -2.42 - - - -
- - - - - - - - 4.0 - - - - - - -
- - - - - - - -0.33 3.93 - - - - - - -
- -1.87 -2.6 - -3.47 1.18 -4.27 -0.74 3.53 - -0.6 -1.44 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.