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Heatmap: Cluster_108 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - - - - - - - - 1.86 1.9 3.11 - - - -
- - -1.2 - -1.07 -1.24 -3.2 - -2.96 - 1.72 2.98 - - 1.69 -
-4.28 - - - - - - - - -1.75 - 0.18 2.2 1.49 - 2.83
- - -4.57 -0.28 - -2.28 -3.07 -1.14 - - 0.36 3.67 - - -1.68 -
- - - - - - - - - - 2.74 3.22 - - - -
1.21 - - - - - - - -2.87 -2.82 2.08 3.09 - - -0.59 -
- - - - - - - - - - - -8.66 2.03 2.5 1.66 1.61
- - -1.08 -0.52 -0.01 -1.37 - -7.32 - - 0.71 3.56 - - - -
- - -1.21 -3.58 0.53 0.1 0.51 -3.95 -5.92 -5.86 1.81 2.99 - -5.85 - -
- - - - - - - - - - - 4.0 - - - -
- - -4.14 0.99 -3.77 - - -8.26 -7.02 -6.96 -0.86 3.73 - - - -
-4.58 -0.74 -7.75 - -6.62 -2.97 -4.33 0.85 -4.84 -1.13 1.5 3.31 -4.84 -5.35 -3.86 -5.96
- - -2.98 -0.97 -1.64 0.32 -0.92 -3.26 -1.49 -3.89 1.87 3.18 - - - -
-5.83 -3.0 -3.42 -2.86 -0.92 -0.52 0.05 0.29 - - 2.16 2.93 - -5.19 - -
- - - - - - - - - - - -4.25 1.12 2.0 3.15 -0.2
- - - - - - - -3.25 - - - 0.01 - - 3.9 -
- - - - - - - - - - - 4.0 - - - -
- - - 1.63 - - - - - - 0.97 3.45 - - - -
- - - - - 0.64 - - - - 2.34 3.23 - - - -
- -5.49 -0.48 -0.49 -1.43 -1.32 -2.23 -6.82 -4.43 - 2.32 2.89 -1.88 -1.29 - -1.17
-6.02 -2.06 -0.14 0.26 -0.46 -0.29 -0.82 -6.11 -2.44 -3.41 2.27 2.67 -6.51 - -4.53 -
- - -0.64 0.13 - - -0.61 - - - 1.09 3.52 - - - -
- - 0.15 - - -0.29 -1.53 - -0.25 - 2.54 2.82 - - - -
- - - - - - - - - - - 1.42 - - 3.74 -
- - - - - - - -3.31 -0.75 1.42 1.93 2.97 - - -0.07 -
-10.4 -9.51 -10.22 -10.89 -12.67 -10.52 -9.23 -14.45 -10.66 -10.59 -7.75 -6.89 1.58 3.08 1.34 0.99
-0.89 -0.03 0.11 0.69 0.34 -0.07 0.35 -1.69 -0.76 -0.72 1.08 1.72 -1.71 -1.48 -1.67 -1.27
-3.34 -2.0 -1.13 0.43 -0.26 -0.85 - -10.81 -1.95 -3.36 2.51 2.68 - - - -
-4.62 - - - - - - - - - 2.36 3.27 - -2.95 0.12 -
-0.38 -0.62 -1.14 -0.78 -0.01 -0.42 -0.21 -1.08 -0.04 -0.22 1.13 2.18 -0.88 -0.93 -1.62 -0.96
- - - - - - - - - - - 4.0 - - - -
- -0.1 0.48 - -0.72 - - - - - 1.83 3.25 - - - -
- - -2.62 - - -1.66 -4.29 -2.94 -1.47 -1.0 1.5 1.89 1.3 0.52 0.86 1.17
- - - - - - - -4.76 - - 1.5 3.71 - - - -
- -1.15 -1.43 - - - - - - - 1.86 3.17 - - - 1.34
- - - - - - - - - - 2.09 3.22 - 1.26 - -
- - - - - - - - - - - 4.0 - - - -
- - - - - - - - - - 1.76 3.66 - - - -
- -5.36 -2.8 -1.46 -2.93 -3.61 - 0.18 0.92 -0.58 1.24 3.19 - - -3.49 -
- - - - - - - - - - 2.29 3.47 - - - -
0.34 -0.64 - - - - -0.52 -1.61 -1.08 -1.02 2.19 2.91 - - - -
- - -2.08 -0.83 -2.26 - -1.92 -8.32 - -6.61 2.69 3.04 - - -4.36 -
- - - - - - - - - - - 4.0 - - - -
-1.71 - - - - - - - - - - 1.44 - - 3.7 -
-6.37 - -1.74 -0.13 -0.31 -3.1 - -4.17 -1.04 -3.5 0.42 3.57 - - - -
- - -1.04 -4.02 -0.66 - -0.23 -6.05 - - 2.32 3.06 -1.46 -3.56 - -2.58
- - -2.03 -1.7 0.61 -0.77 -6.41 - -1.06 -5.09 1.75 3.24 - - - -
- - - - - - - - - - - 4.0 - - - -
-0.73 - -1.79 -0.4 -2.21 -1.08 -6.92 -0.36 -0.87 -3.03 2.5 2.71 - - - -
- - - - - - - -0.42 - - - 2.8 - 3.05 - -
- - - - - - - - - - - 4.0 - - - -
- - - - - - -0.13 - - - 0.83 3.71 - - -2.25 -
-6.4 - 0.49 -0.0 -0.47 0.25 -6.17 -7.18 -2.88 -4.24 0.16 3.37 - - - -
- -9.41 -1.27 -1.52 -0.82 -2.1 -2.17 -5.09 0.7 0.09 1.97 2.92 - - - -
- - -0.23 -0.3 -2.04 -0.69 -3.77 -3.98 -3.97 -2.91 2.69 2.74 - - - -
- -2.65 -1.1 -3.03 -2.16 -2.62 -3.69 -3.71 -0.71 -2.05 2.65 2.88 -3.28 -5.38 -3.31 -
- -8.62 -1.66 -4.56 -0.12 -3.47 -5.41 -6.44 -3.32 -7.43 1.89 3.42 - - -4.17 -
-5.06 -4.67 -1.64 -3.85 -0.08 -2.18 -3.64 -11.09 -3.68 -5.8 1.83 3.41 - - -5.55 -
- - - - - - - - - - 1.09 3.79 - - - -
- - - - - - - - - - - 4.0 - - - -
- -7.26 -2.86 -3.42 -4.51 -1.77 -2.28 0.45 -0.09 1.51 1.48 2.86 -7.31 - - -
- - - - - -1.07 - - - - 2.57 3.26 - - - -
-4.34 - -2.22 -1.62 - -1.99 - -3.5 - -3.91 2.6 3.16 - - - -
- - - - - - - - - - - 4.0 - - - -
- - - - - - - - - - - 4.0 - - - -
- - - - - - - - - - - 4.0 - - - -
- - - - - - - - - - - 4.0 - - - -
- - - - - - - - - - 2.02 2.5 - - 2.66 -
- - - - - - - - - - - 4.0 - - - -
0.73 - - - - - - -0.39 - - 0.95 2.97 - - 1.93 -
- - -0.13 -5.29 -2.32 -3.66 -3.48 -3.75 0.7 -2.99 1.47 3.34 - - - -
-3.98 - -0.61 -2.13 -4.65 -2.5 -3.45 -0.65 -0.41 -3.15 1.81 3.24 -1.87 - - -
- - - - - - - - - - - 4.0 - - - -
- - - - - - -0.39 - - - 0.99 2.69 1.19 - 2.17 -
- - - - - - - - - - - 0.45 - 0.64 3.71 -
- - - - - - - - - - 2.49 3.38 - - - -
- - - - - - - - - - 1.28 3.76 - - - -
- - - - - - - - - - - 4.0 - - - -
1.06 - -3.63 -3.55 -2.34 -3.42 -2.37 -3.79 -4.59 - 1.82 3.05 -1.74 -4.42 -4.35 -0.12
-2.54 -5.17 -1.36 -2.19 0.17 0.95 -0.78 -4.62 - - 1.91 2.95 - - - -
- - - - - - - - - - 2.08 3.56 - - - -
- - - - - - - - - 1.03 2.07 3.29 - - - -
- - -0.24 -0.49 -2.44 -1.21 -1.73 -5.4 -5.61 -5.56 2.72 2.78 - - - -
- -9.47 -2.69 -2.8 -5.68 -6.23 -3.02 -5.53 -0.47 -2.11 2.31 3.27 - - - -
- -10.31 -2.07 -2.04 -4.7 -6.67 -5.44 -0.64 -0.85 -0.87 2.02 3.27 -9.51 -10.6 -8.53 -
-1.34 -0.54 -0.92 -0.03 -0.03 -0.67 0.42 -2.55 -1.57 -2.66 0.35 1.27 1.01 0.23 -0.02 0.95
- - -4.77 - -3.06 - -7.02 - - - -4.68 -0.78 0.69 -0.49 3.56 0.19
-2.5 - -0.93 - -5.45 - -2.55 - - -4.93 2.61 3.16 - - - -
-6.0 -6.87 -0.46 -0.4 0.35 -0.15 1.2 -2.9 -4.5 -4.55 1.6 2.75 - - - -5.1
- - - - - - - - - - - 4.0 - - - -
- - - - - -1.11 -2.74 - -1.5 1.73 1.18 2.95 - - 0.82 -
-1.52 - -0.72 - - - - -1.05 - -0.09 1.53 3.42 - - - -
- - - - - - - -2.1 - - 2.25 3.46 - - - -
- - - - - - - -0.54 - - 1.58 2.05 - 0.65 2.72 -
- - - - - - - - - - - 4.0 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.