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Heatmap: Cluster_188 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-1.85 0.69 1.56 0.92 1.35 0.58 -3.45 0.02 -1.72 -0.85 -0.93 -0.75 -1.07 -1.17 -0.49 -1.0
-2.09 0.42 1.6 1.43 1.02 1.06 -2.13 -0.58 -0.61 -0.35 -0.03 -0.32 -4.53 -4.73 -1.77 -3.78
0.66 0.3 1.17 0.86 2.1 0.37 -2.25 -0.26 -0.73 -1.77 -2.67 -2.78 -1.62 -1.54 -4.2 -0.79
-2.13 2.65 0.23 -0.02 0.78 0.19 -1.03 -1.42 - - - - 1.56 -0.54 - -
-0.66 1.31 1.4 1.11 0.29 0.8 - -1.54 -3.34 - - -2.35 -2.01 -1.11 0.96 0.87
- 2.47 0.52 1.34 1.7 0.11 - -5.25 -1.86 - -1.75 - -0.6 -0.11 - -
-0.35 1.85 0.86 1.17 0.67 0.14 -0.71 -1.35 -1.52 -1.87 0.27 -0.11 -1.9 -1.95 -1.92 -1.71
-2.97 1.58 1.9 0.64 1.44 1.0 0.29 -0.26 -4.96 -4.48 -2.36 -1.75 -5.2 -5.45 -2.85 -4.32
-0.27 2.03 0.42 0.97 0.74 -0.27 -2.47 -3.52 -1.88 -1.67 -0.4 0.96 -0.73 -4.74 -3.48 -0.01
-0.5 0.73 0.83 0.84 0.8 0.88 -1.36 -1.91 -2.75 -3.69 -1.96 -2.09 0.53 0.77 -1.01 0.57
0.68 1.33 0.32 0.78 0.14 0.01 -0.18 -1.33 -0.12 -0.56 -0.42 -0.61 -0.49 -0.86 -1.98 0.01
1.11 1.81 0.53 1.12 0.87 -0.34 -3.13 -2.56 -3.76 - -5.25 -3.36 0.09 -0.14 -0.44 -0.12
-4.5 1.9 1.62 0.16 1.1 2.12 - -4.15 - - -1.66 - -1.5 -2.59 - -0.62
-2.92 1.56 1.51 1.27 0.78 1.64 -4.09 -0.98 -0.36 -0.33 -1.67 -1.49 - -7.07 - -
0.69 0.84 0.25 0.78 0.11 0.02 -0.38 -0.79 -0.19 -0.18 0.01 0.3 -1.5 -1.03 -0.46 -0.59
-0.19 1.34 1.94 1.63 1.14 1.5 -6.39 -5.33 -6.12 -7.35 -2.26 -1.42 - -9.33 -8.26 -9.36
-3.72 0.03 -0.54 -2.07 0.27 -1.67 -6.35 -4.11 -7.24 -5.97 -4.59 -3.11 0.79 -2.32 3.3 -1.3
-2.92 0.81 1.41 1.55 0.27 0.96 -2.43 0.14 1.37 -0.3 -2.98 -2.96 -4.87 -1.57 -4.63 -4.73
-0.74 0.46 1.12 1.27 0.66 1.9 -1.14 -1.55 -2.23 -1.48 0.19 0.12 -2.92 -2.69 -3.01 -2.91
-2.3 -0.1 0.76 0.08 0.97 0.76 -0.96 0.33 -4.42 -2.68 -1.46 0.48 0.45 0.1 0.22 0.17
-3.92 -4.67 1.83 1.16 1.31 0.62 -1.03 0.47 -1.38 0.96 -2.13 -1.56 -0.62 -4.31 - -0.75
-2.69 0.88 1.57 1.34 1.5 0.94 -0.33 -2.05 -2.33 -2.94 -0.41 -0.15 -2.62 -2.61 -1.9 -2.95
-2.69 1.82 1.15 1.38 1.91 0.77 0.26 -2.51 -3.33 -4.19 -2.23 -2.02 -7.08 -5.59 -6.1 -6.2
-3.94 0.05 1.51 1.18 1.57 0.97 -1.93 -2.61 -0.6 -2.07 0.44 0.08 -1.46 -2.42 -1.63 -2.11
-2.58 0.96 1.77 0.88 1.47 0.51 -1.47 -3.98 -2.26 -2.12 -2.46 -1.71 -0.19 0.02 -0.88 -0.62
-0.18 0.54 2.06 1.51 0.87 1.17 -2.15 -2.18 -5.24 -3.74 -0.09 -0.19 -5.11 -5.28 -3.17 -4.16
-1.71 1.24 1.14 0.54 0.81 1.02 -2.15 -1.98 -0.25 -1.06 -0.65 -0.82 -0.58 -0.07 -0.8 -0.54
-2.9 1.85 1.61 1.87 1.66 -0.42 0.54 -4.99 -4.36 - -4.24 -4.36 - - - -
-5.9 1.71 1.93 1.38 1.49 1.33 -2.15 - - - - - -3.16 -2.25 -2.18 -2.28
-5.51 0.84 1.98 1.73 1.46 1.49 -2.36 -3.2 -4.21 -4.64 -1.29 -1.07 -5.26 -6.68 -7.61 -5.12
-4.21 -3.86 -3.5 -3.9 -2.5 -2.85 -4.66 -5.14 -6.05 -5.99 -4.25 -5.25 1.62 2.59 2.09 0.9
-4.55 2.12 0.92 1.14 2.13 1.36 -1.52 -8.36 -7.1 -7.04 -4.01 -3.31 - -5.88 - -
- 2.15 1.35 1.58 1.66 0.73 -0.06 - - - - -1.99 - - - -
-8.73 1.58 0.89 0.93 2.76 1.0 -3.71 -8.24 - - -3.13 -1.93 - - - -6.11
-2.12 0.9 1.83 1.54 1.31 1.12 -0.52 -1.23 -4.07 -4.88 -1.35 -0.28 -3.17 -4.6 -6.71 -2.38
-1.18 0.44 1.21 -2.37 1.82 -0.74 - -4.36 - - - - -0.79 1.82 1.77 -
-0.89 2.14 1.28 1.37 1.36 -0.55 -0.35 -2.52 -1.6 -2.13 -0.28 -1.2 - - - -
-2.69 0.92 1.19 0.32 0.8 0.59 0.59 -0.06 -2.55 -3.23 -1.46 -0.36 -2.0 -0.22 -0.29 0.46
-2.31 0.75 1.2 1.21 0.74 1.04 0.06 -0.87 -1.21 -0.46 -0.49 -0.02 -1.46 -1.17 -2.45 -1.54
0.06 1.67 0.93 1.13 0.54 0.28 0.32 0.44 -1.14 -2.88 -0.3 -0.67 -4.11 -4.82 -5.25 -1.98
-0.31 -0.01 0.49 1.03 0.79 0.66 -0.31 -0.54 -0.53 -1.02 -0.23 -0.05 -0.48 -0.35 -0.48 -0.43
-0.59 0.77 0.92 0.92 0.26 1.95 -2.27 -0.54 -1.82 -2.22 -0.49 -0.38 -0.94 -2.03 -0.15 -2.06
-2.22 1.29 1.33 1.55 1.18 0.76 -0.43 -1.23 -1.85 -2.79 -0.15 -0.29 -2.43 -3.01 -3.03 -2.4
-1.94 1.65 0.84 1.04 0.66 1.1 -1.05 -1.43 -0.04 -0.57 -0.43 -1.64 -3.08 -4.2 -1.13 -0.23
-4.46 1.73 1.08 1.58 2.09 0.52 -2.49 -2.0 -1.8 -2.32 -1.68 -0.75 -6.69 -6.79 - -
-0.96 0.02 0.95 0.91 0.78 0.58 -0.65 -1.92 -0.95 -1.03 -0.98 -0.29 0.03 0.03 -0.11 0.3
-0.13 0.74 0.64 0.59 0.65 0.37 -1.02 -1.17 -3.02 -4.71 -1.49 -1.46 0.74 0.87 0.08 0.15
-6.67 1.47 1.75 1.21 1.59 1.4 -1.53 -5.16 -4.22 -6.16 -1.95 -0.18 -3.9 -6.0 -2.93 -3.44
0.18 2.05 1.57 1.23 1.95 -2.46 - - - - - - - - 0.46 -
-1.39 1.9 1.02 1.4 0.89 0.36 -1.43 -2.37 0.46 0.48 -1.26 -1.58 - - - -
-2.23 0.53 1.37 1.38 0.66 2.15 -0.48 -0.71 -3.81 -3.75 -1.52 -1.37 -1.82 -2.26 - -1.11
-2.76 1.87 1.15 0.19 0.24 1.88 -0.01 -4.93 -4.85 - -1.55 -1.34 -2.91 -2.69 0.79 -2.62
-0.34 0.56 0.34 0.37 0.37 0.34 -0.35 -0.29 -0.45 -0.41 -0.68 -0.34 0.26 0.14 -0.37 0.06
- 1.16 1.81 1.97 2.27 -0.54 - -2.07 -2.74 - - -1.17 - - - -
- 2.07 1.84 1.98 1.01 0.04 - - -2.06 - -1.97 -1.08 - -1.89 - -
-2.91 0.38 1.82 1.65 1.41 1.37 -1.55 -0.37 -1.08 -1.84 -1.46 -1.32 -7.73 -9.09 -6.34 -6.44
-0.21 0.82 0.54 0.88 0.62 1.41 -0.97 -0.22 -0.32 0.14 -0.29 -0.86 -1.55 -1.78 -2.2 -1.35
-1.01 0.92 0.57 0.85 2.09 0.39 -1.4 -0.13 -0.93 -1.41 -0.54 -0.22 -2.37 -3.67 -0.99 -1.92
-2.03 1.16 1.38 0.26 2.24 1.11 0.15 -2.57 - -8.26 -0.86 -0.42 -4.68 -5.51 -4.03 -3.04
- 2.74 1.94 0.77 -0.59 1.56 -2.66 - - - - - - - - -
-3.76 2.18 1.81 0.39 1.58 1.19 -0.81 -3.28 -2.36 - -2.27 - - -2.13 - -
- 2.75 1.05 -2.03 2.0 1.1 -0.79 - - - - -2.17 - - - -
-1.01 1.26 1.05 1.28 0.32 0.39 -1.72 -1.33 0.77 -0.64 -0.89 -0.92 -1.09 -3.41 -0.11 -1.21
-1.64 1.56 1.59 1.22 1.12 1.14 -4.06 -4.08 -6.27 -4.62 -3.59 -1.96 -0.23 -0.99 -2.96 0.03
-2.26 0.88 1.41 1.12 0.96 1.29 0.44 -0.91 -1.5 -2.39 0.36 -0.25 -4.09 -5.12 -4.7 -3.97
-0.13 0.57 0.32 -0.38 -0.35 1.06 -0.16 0.1 -0.67 -1.2 -0.14 -0.65 -0.11 0.47 0.16 -0.48
-1.48 1.46 0.78 0.94 1.39 0.1 -0.31 -2.14 -3.66 - -2.24 - 0.28 -0.08 -0.33 0.37
-1.74 0.63 0.33 -1.31 0.75 0.33 -1.37 -1.42 - - - - 1.22 1.71 - 1.68
-2.16 2.35 0.78 0.64 0.83 1.03 - - - - - - 0.84 -0.99 - 0.4
-0.83 0.9 0.48 -0.18 -0.08 0.63 -1.61 -1.88 -2.91 - -2.82 -2.93 -0.03 1.75 1.36 -0.16
-0.32 1.01 1.32 0.76 1.82 0.08 -2.48 -0.62 -1.16 -1.59 -3.32 -2.4 -0.22 -0.82 -0.95 -0.83
-0.11 -0.11 0.68 0.68 0.72 0.42 0.3 -0.37 -1.3 -1.51 -0.38 -0.06 -0.23 -0.0 -0.16 -0.45
-0.93 1.53 1.6 1.42 0.77 1.05 -1.71 -2.46 -1.39 -1.24 -2.07 -1.47 -1.6 -1.2 -4.63 -1.26
-0.33 0.97 0.33 0.69 0.09 0.1 -2.38 -1.7 -3.44 -3.97 -5.19 -4.71 1.35 1.05 -0.73 1.2
-4.82 2.05 1.7 1.62 0.94 1.3 -3.0 -3.98 -6.45 -5.86 -2.71 -2.77 -3.7 -3.1 -1.67 -3.32
0.61 1.63 0.86 1.38 1.89 0.82 - -3.01 - - - - - -1.13 - -0.15
-1.04 0.15 1.59 1.33 1.59 0.06 -2.96 0.24 -1.67 -1.47 -0.8 0.44 -2.2 -2.31 -1.72 -2.43
- 2.01 1.72 1.88 1.26 -0.75 -1.39 -3.37 - - - -2.47 - -1.22 -0.15 -
- 1.39 -1.55 2.68 1.9 -0.01 - -0.29 - - 0.1 - - - - -
0.24 1.68 1.03 2.42 0.93 1.03 - -4.84 -4.44 -2.5 - - - - - -
-3.46 -0.99 -0.89 -0.39 -0.2 -1.23 -2.23 -3.21 - -2.92 - - 2.09 2.33 0.61 0.66
0.54 1.02 0.75 1.14 0.73 -0.06 -0.59 -1.8 -0.13 -0.65 -0.48 -0.22 -1.02 -1.22 -1.37 -0.69
-2.53 1.73 1.23 1.3 0.31 0.47 -0.93 -2.75 -3.79 -3.73 -0.7 -2.22 -0.11 -1.53 0.86 -1.56
-1.41 0.09 0.46 0.62 0.5 -1.39 -0.59 0.09 -1.18 -1.19 -1.57 -1.28 0.89 0.56 0.22 1.01
-1.14 0.94 1.85 1.85 1.13 1.08 -1.76 -0.72 -5.34 -4.99 -0.75 -0.77 - - - -
-0.71 0.06 1.02 1.24 0.96 0.94 -1.07 -1.61 -0.78 -0.72 -0.04 0.16 -0.91 -1.16 -1.16 -0.79
0.4 1.12 0.31 0.71 0.96 0.12 -1.41 -1.94 -1.25 -0.61 -1.47 -1.03 0.13 -0.75 -0.35 0.65
-1.31 0.38 0.83 0.41 0.63 0.83 -1.72 -1.15 -0.88 0.13 -1.24 -1.71 0.23 0.82 -0.85 0.34
-0.75 1.37 0.79 1.03 1.01 0.81 -0.48 -0.28 -1.06 -0.85 -0.31 -0.81 -1.65 -1.72 -1.51 -1.53
-1.21 1.8 1.71 0.87 0.57 1.29 -1.59 -1.05 - - - -1.76 - -2.91 0.76 -2.94
- 2.75 1.16 1.94 -1.75 1.21 - -4.21 - - - - -0.97 - - -
-1.15 1.69 0.85 0.73 0.64 0.47 -1.27 -2.68 - - -4.22 -2.45 -0.32 -0.42 1.36 0.01
-0.28 0.04 0.92 0.95 0.75 0.71 0.1 -0.45 -1.88 -1.69 -0.24 -0.09 -0.26 -0.61 -0.8 -0.36
-0.94 -0.17 1.11 0.64 1.11 0.28 -1.05 0.33 -0.42 0.15 -0.34 0.16 -0.72 -1.62 -1.27 -0.59
-8.8 -4.59 -4.24 -4.56 -5.36 -5.18 -10.69 -7.84 -11.04 -8.39 -4.23 -6.8 1.96 3.24 -0.33 0.71
-0.91 0.73 1.06 0.89 0.61 0.52 -0.9 -0.22 -2.13 -2.29 -0.79 0.09 -0.27 -0.83 -0.06 0.1
- 1.89 1.7 1.13 1.15 1.74 - - -4.67 -4.61 -2.57 -2.36 - -3.47 -0.4 -
-0.93 2.43 1.16 1.53 -0.27 0.86 -0.55 -2.05 -1.91 -1.28 - -1.34 -1.65 - - -
- 1.88 1.15 1.34 2.28 1.31 -2.07 - - - - - - - - -
-3.08 1.27 0.92 0.64 0.63 0.74 -4.57 -4.6 -6.47 -6.41 -3.37 -2.71 0.38 0.2 1.28 0.65
-1.23 0.65 -0.26 -0.5 1.45 -0.33 -1.69 -1.62 -1.53 -1.48 -1.49 -0.89 0.41 0.11 1.79 -0.26
-0.1 0.62 0.54 0.8 0.92 0.51 0.18 -0.77 -0.78 -1.29 -0.51 -0.55 -0.89 -0.53 0.28 -1.07
- 2.54 1.08 1.17 1.2 0.07 - - - - - - - 1.3 - -
-1.94 0.38 1.07 1.23 1.31 0.99 -0.49 -0.64 -1.12 -1.28 0.37 -0.24 -1.28 -1.8 -2.56 -1.81

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.