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Heatmap: Cluster_214 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - 2.24 3.01 - 1.68 - - - - - - - - - -
-3.6 -0.19 0.8 0.78 -0.61 -0.7 -0.65 -0.09 -2.6 -2.54 -2.88 -1.51 1.44 1.34 -0.39 0.93
0.11 - -1.07 1.26 0.64 - - 1.36 -0.49 - 1.19 0.5 - - 1.82 -
-0.13 -0.18 1.64 2.29 -1.11 1.54 -1.15 -2.9 -2.4 -1.93 -0.89 -0.09 - - - -1.78
-8.32 - 1.81 2.86 -0.63 1.47 -0.72 -2.88 -2.7 -1.88 -2.13 -1.21 - - - -
0.24 -1.05 1.93 2.38 -0.21 -0.49 -4.4 0.97 0.45 -2.18 -3.95 -4.9 -6.86 -6.96 -5.89 -5.4
-2.12 - 0.33 2.3 0.46 -0.12 0.31 - - - - -3.91 - - 2.58 -
- -1.97 2.45 2.01 - -0.44 0.09 -2.26 -0.25 0.55 -0.74 - 0.39 - - -
- - 1.87 -0.61 1.99 0.61 -0.61 - 0.64 - 0.73 1.21 - - - -
- - - -0.55 - - -1.56 -2.09 -0.32 - - - - 0.94 3.59 -
- - 1.4 1.93 -2.28 -1.43 0.14 -0.31 - - - -3.41 1.92 -0.18 0.89 -1.21
-3.11 -2.25 1.72 2.16 0.39 0.52 -0.57 1.06 -1.79 -0.9 -0.77 -0.35 -4.06 -3.83 -4.08 -4.6
-0.97 - 0.84 2.5 - - - - - - 0.51 - - - 2.73 -
- - 2.7 2.11 - - 2.18 -0.59 - - - - - - - -
- - 2.64 3.29 - - - - - - - - - - - -
- - 2.27 3.1 1.16 -1.33 - - - - - - - - - -
- 0.54 1.79 2.72 0.11 1.66 -2.69 -3.1 - - - - - - - -
- - 1.74 2.86 - 0.16 - -2.88 - - -0.14 1.69 - - - -
- - 2.17 3.08 - - - - - - 0.52 0.72 - - - -
-1.71 -3.33 1.42 0.93 0.08 -0.02 -0.97 0.39 0.42 -0.08 -0.97 -1.59 0.23 -0.18 -1.11 0.6
- - 1.81 3.1 -0.72 0.15 -0.53 -3.92 - - 0.07 -1.35 - - - -
- - - - - - - - - - - - - 1.62 3.69 -
-0.05 -1.52 0.99 1.22 -0.19 -0.69 -0.94 1.0 0.43 0.46 -0.29 -1.01 -0.62 -0.78 -1.08 -0.67
- - 2.37 2.59 - - - - - -0.7 -0.66 -0.77 - - 1.56 -
-2.66 1.0 2.02 1.94 -0.42 0.16 1.25 -0.77 -4.04 - -0.95 -0.88 - - - -
- - - - - - - - - - - - 2.15 1.64 2.13 2.03
- - 3.26 0.81 0.24 -0.14 -0.04 -2.03 - - - -2.13 - - 0.19 -
- - 2.44 2.64 0.79 1.38 - - - - - - - - - -
-6.69 -2.08 1.52 1.58 -0.7 1.08 0.43 0.93 -2.42 0.08 0.5 0.13 -2.74 - - -
- -0.9 1.54 1.6 -0.11 0.63 0.85 0.27 -2.32 -0.8 -1.64 -1.52 - -1.74 0.0 0.36
- - 2.17 2.85 -0.48 -0.08 -3.08 -4.31 -2.64 -4.58 -0.15 -0.22 -2.72 -2.0 -3.33 -
- -1.68 2.13 1.57 -0.64 0.85 -3.31 0.37 0.18 1.63 -4.43 -2.28 -5.18 - - -
- -5.59 1.82 2.35 0.41 0.32 0.14 -3.08 -0.64 -3.42 0.79 0.11 - - - -
- - 1.61 2.86 1.22 1.12 -0.89 - -0.57 - - - - - - -
- -0.23 2.13 1.96 0.93 0.4 - - - -0.54 - -0.61 - 1.21 - -
-1.28 0.83 1.41 2.24 -0.98 -0.03 0.32 -0.31 - - -0.78 -0.61 -0.78 -2.88 - -0.1
- - 1.25 2.66 0.53 -0.19 1.68 -4.14 0.03 -0.56 -4.92 - - - - -
-0.29 -0.76 0.38 0.42 -0.31 -0.31 0.01 -0.32 -0.4 -0.23 -0.13 -0.54 0.35 0.38 0.25 0.64
- - 2.12 1.43 -0.13 0.54 -1.04 -3.55 -1.18 -0.44 -0.82 - -0.57 0.21 1.14 -2.28
- - -4.45 -2.54 - -4.49 -5.12 - - - -3.79 - 2.51 1.01 -1.56 2.93
- -2.54 2.55 1.65 0.51 0.94 -1.03 -0.36 - 0.03 -1.26 -0.36 - - - -
0.09 -1.2 1.24 1.7 0.02 0.12 0.36 -0.67 -0.86 -0.44 0.0 -0.3 -1.0 -1.54 -2.1 -0.53
- - - 3.68 - - - 1.66 - - - - - - - -
-1.17 - 2.59 0.61 0.81 1.65 -0.41 -0.82 - - - 0.85 - - - -
- - 1.92 0.94 -0.36 -2.08 - - -1.37 - 0.24 -0.42 1.84 1.36 - -0.28
-2.72 -0.17 2.45 1.35 -1.68 0.5 - - - - - - - 0.01 2.08 -
- 0.56 2.28 2.62 - - - 1.82 - - - - - - - -
- - -1.07 - - - - - - - - - 1.84 2.3 2.81 -
-0.3 -0.05 1.82 3.42 - - - - - - - - - - - -
-1.11 -0.43 0.75 1.14 -0.47 -0.43 -1.92 0.29 -0.08 0.34 -2.19 -2.27 0.77 0.51 -1.25 0.82
- 0.69 1.83 2.4 -0.74 -0.52 -2.12 1.7 -5.03 -1.8 -3.35 -3.04 - - -2.73 -3.83
- -1.69 2.41 2.97 -0.43 0.76 -3.22 - - - - - - - - -
- - 1.67 2.43 - -0.37 - - 0.91 0.97 - -1.1 - - 1.23 -
-3.54 - 1.61 2.95 -0.45 -0.2 -0.72 0.34 -1.18 -2.12 -2.08 -2.19 - - -0.86 -
-2.3 -3.88 0.23 0.09 -2.31 -0.95 -5.2 -1.44 -0.26 -0.44 -3.55 -3.39 1.67 2.15 0.27 0.85
-3.12 -1.42 -0.21 -0.57 -4.33 - -3.38 -3.88 -3.8 -4.33 -4.29 - 2.88 0.93 0.85 1.34
0.37 -0.11 1.27 1.4 -0.0 -1.24 -0.85 -0.9 0.16 -0.1 -1.35 -0.84 0.02 -0.57 -0.68 -0.13
- - - - 3.54 - - -1.24 - - - 1.97 - - - -
-2.55 - 2.29 1.43 0.73 -0.74 0.2 -1.57 - - - 0.45 - - - 1.66
- - 2.25 1.94 -3.68 - -2.89 -1.49 1.28 1.2 -0.28 -0.02 - - - -1.74
-2.28 -1.58 1.83 2.41 0.52 0.9 -0.61 -9.45 -3.35 -2.07 -0.11 0.44 - -7.01 - -
0.27 -0.31 2.25 2.14 -1.54 -1.68 -0.33 - -1.05 - - - - -0.85 1.22 -
0.38 -1.57 1.32 1.45 -0.45 -0.33 -0.7 -0.96 -1.71 -0.55 -0.41 0.14 -0.01 -0.19 -0.71 0.22
-3.74 -2.55 2.02 2.93 - - -0.57 - - -0.94 1.26 -1.04 - - - -
- - 2.97 - 3.03 - - - - - - - - - - -
- - 2.08 3.0 - - - - - - - - - 1.9 - -
- -2.29 2.44 2.17 1.89 -0.05 -0.56 - - - - - - - - -0.91
-0.97 - - 3.25 - - -0.61 - - - - 0.71 - 1.88 - -
- -0.36 3.2 2.12 - - - - - - - 0.76 - - - -
- - 1.43 3.35 - - -1.67 - - - 1.0 -0.3 - - - -
- - 1.53 3.13 - - -1.77 - - - 1.18 0.85 - - - -
- - 1.88 2.62 - - -0.04 - - - 1.41 1.27 - - -2.8 -
-3.3 -2.05 2.29 2.54 0.62 0.35 - - -1.95 -1.3 -1.27 -1.37 - - -0.63 -
-0.54 - 2.2 2.73 -0.43 - - - -0.99 -0.34 0.1 -0.0 - - - -
- - 2.26 1.2 1.6 -0.71 1.76 -2.12 -1.16 -4.05 -1.43 -0.39 - - - -
- - 2.08 3.47 - -3.52 - -1.43 - -2.0 - - - - - -
2.44 - - - 3.4 - - - - - - - - - - -
-4.61 -5.79 1.67 2.44 -0.39 0.32 -2.73 0.97 -2.62 0.13 0.75 -2.43 -3.6 -6.09 - -
-2.45 -0.37 2.29 2.57 -2.92 -2.18 - -6.28 0.52 -0.06 -0.17 -1.07 -5.31 - -4.34 -5.43
-0.17 - 1.63 - - - 0.96 - - - 1.3 1.19 - - - 2.42
- - 2.76 3.16 - - - - -2.75 - - -2.76 - - - -
- - 2.62 1.96 -2.26 0.17 1.75 -3.05 - - - 0.2 - - - -
- - 1.61 3.14 0.1 -0.15 0.03 -1.16 - -3.57 -1.95 -2.05 - -3.38 - -
- - 3.29 2.64 - - - - - - - - - - - -
-6.48 - -1.34 -2.51 -3.53 -2.88 -6.33 - - - -4.98 - 2.13 1.4 1.28 2.51
0.2 -2.27 1.23 1.32 -0.94 0.8 -0.67 0.61 0.13 0.7 0.26 -0.66 -2.15 -2.38 -2.3 -2.3
- - 2.2 2.4 - 1.52 - - - - -0.57 0.91 - -0.45 - -
- - 2.33 3.24 -3.76 -0.68 -0.97 -3.42 - - - -2.24 - - - -
0.1 -7.49 2.08 2.36 0.64 0.24 -3.73 -5.82 -4.76 -5.05 0.32 0.48 - - - -
- - 2.53 2.81 0.72 -1.02 - 0.1 - - - - - - - -
- - - 2.71 2.47 - - - - - - 1.97 - - - -
-0.67 -0.93 1.2 1.78 -2.58 -3.08 -2.97 -3.98 -2.48 -4.42 -3.16 -3.75 -1.54 0.05 2.68 -1.13
-0.64 -6.1 1.67 2.09 -1.72 -2.84 -1.43 -3.75 -1.96 -1.86 0.6 -0.75 0.63 -0.87 -0.36 0.58
- - 0.16 1.49 -0.3 -0.46 -2.1 -0.62 - - - - 0.48 - 3.04 -
- - 2.12 1.82 -1.23 0.97 -0.43 -0.46 - - - - - - 1.54 0.44
- - 1.88 2.23 0.83 -0.84 0.04 -1.69 -1.52 -0.01 -0.1 -0.21 - - -0.27 -
-0.56 -1.81 1.88 2.36 -1.58 -5.36 -0.62 -2.64 -1.02 -0.52 0.57 0.13 -1.73 -2.92 -1.17 -1.33
- - 2.43 1.0 -0.54 -0.69 - - - -0.02 - - - 0.74 2.22 -
-4.44 - 2.14 3.0 -1.37 -2.49 1.43 -4.03 - - - - - -6.33 -2.22 -
- - 2.46 2.63 -1.51 -4.96 1.9 -2.41 - - - - - - - -
- - 2.54 2.4 -2.19 -4.29 2.21 -5.83 - - -7.82 - - - - -8.72
- - -0.72 -0.31 - - - -0.17 - - - - - - - 3.78
- -1.55 1.95 2.4 - - - -3.11 - - - - 1.45 -2.23 0.84 0.74
- - 1.6 3.3 -6.37 -2.94 - - - - 1.28 -0.84 - - - -
-5.16 - 2.51 1.38 -0.81 0.92 1.36 -2.42 - - -2.54 0.94 - - -1.37 -
-1.48 -0.27 1.5 1.69 0.49 -0.85 0.45 -0.89 0.26 0.44 -0.98 -1.15 -1.07 -1.51 -4.03 -1.04
- - 2.47 2.07 1.28 1.95 - - - - - - - - - -
0.05 -0.99 1.24 2.25 -1.35 -0.99 0.04 -0.03 -2.08 -4.02 -3.99 -3.09 0.52 -0.25 -1.76 0.46
-1.52 0.61 2.06 2.53 -1.24 -1.24 -1.98 -0.95 -2.73 -1.0 -0.79 0.12 -4.74 -4.71 -4.04 -3.28
- - 1.72 - 2.22 1.48 1.04 -0.99 - - 1.44 - - - - -
-0.24 -0.79 2.14 2.54 0.63 -0.22 -0.24 -3.46 - -4.3 -0.8 -1.36 - - - -
-0.97 0.75 1.5 2.01 0.37 -0.08 1.1 -4.07 -0.54 -1.71 -0.56 -0.44 -5.48 -5.99 -5.51 -5.02
-1.31 -1.3 1.93 1.24 0.46 -0.01 1.05 -0.31 -1.04 -1.02 -1.15 -1.44 -0.77 -0.95 -2.55 -0.53
- -4.04 2.82 2.89 -1.76 -0.2 -3.19 -7.16 - - -3.53 -3.63 - - - -4.72
-1.38 -0.25 1.56 0.7 1.03 0.34 0.67 -2.29 -0.38 -0.67 -0.16 0.37 -0.92 -1.79 -2.01 -1.15
-3.49 -0.0 1.63 1.76 -0.62 0.92 -0.18 0.95 0.04 -1.49 -0.38 -1.84 -2.45 -3.14 -3.69 -1.92
1.48 - 1.92 3.12 - -0.42 - - - - - - - - - -
- - 1.59 1.71 0.7 0.58 1.76 0.3 -3.38 -1.28 -1.89 0.26 - - - -
- - 0.19 -1.92 - - - -5.95 - - - - 2.81 1.0 1.61 1.32
- - 2.03 2.83 -2.34 -2.49 -1.55 - -1.86 0.36 0.04 0.58 - - - -
- - - - - - - - - - - - - - - -
-4.5 0.72 1.3 1.75 0.39 0.05 1.1 -0.6 0.03 -0.23 -0.77 -0.42 - - - -3.11
- - - - 3.69 - - - - - - 1.63 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.