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Heatmap: Cluster_251 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
2.1 1.91 -0.05 -1.3 -1.5 1.14 - -0.96 - - - - - 0.18 1.25 -
-0.67 0.91 -1.69 -2.73 -1.44 -0.58 -0.92 -1.6 -5.46 -2.24 -4.37 -2.48 1.11 1.73 1.19 1.56
-0.52 0.08 -1.56 -2.52 -1.76 -2.39 -1.67 -1.4 -3.05 -4.27 -3.13 -2.42 1.67 2.0 1.46 1.11
0.69 0.49 -1.75 -2.04 -0.54 -1.15 -0.7 -1.0 -1.41 -1.99 -1.19 -1.5 1.05 1.29 1.26 0.9
0.77 0.8 -1.13 -3.13 -0.59 -0.38 -1.91 -1.69 -1.89 -1.83 -0.92 -1.48 0.5 1.32 1.65 0.56
0.71 1.03 -1.1 -1.51 -0.35 -0.15 -0.79 -0.98 -0.63 -0.47 -0.42 -0.44 0.65 0.59 0.08 0.81
0.15 2.42 - - -3.39 -3.45 -4.22 -5.28 - - - -2.88 2.41 0.77 - 1.09
0.27 0.69 -1.74 -1.56 -1.02 -2.38 -2.27 -1.5 -4.55 -4.49 -1.55 -1.32 1.33 1.41 -1.05 2.27
0.68 2.26 -1.44 -1.49 -0.02 -0.1 -0.62 -1.65 -3.53 -4.38 -1.82 -1.83 0.48 0.49 0.6 -0.02
0.02 1.43 -2.59 -2.85 -1.42 -1.06 -1.08 -1.02 -0.99 -1.45 -1.15 -0.84 0.93 1.4 0.86 0.96
1.22 1.64 -0.72 -0.7 -0.1 -0.23 0.18 -0.06 -1.04 -1.42 0.1 -0.32 -0.5 -0.87 -0.55 -0.36
0.26 1.56 -1.19 -1.66 -0.65 -0.49 -0.33 -0.75 -0.57 -0.85 -0.69 -0.37 0.53 0.41 0.74 0.38
0.19 3.21 -1.74 -2.41 -1.02 -0.19 -0.41 - -2.17 - - - -0.82 - 1.15 -
0.12 1.02 -1.59 -1.11 -0.84 -0.44 -0.01 -1.43 -1.99 -1.96 -0.58 -0.69 0.77 0.99 1.03 0.92
0.47 1.88 -0.52 -1.45 -0.55 -0.7 0.17 -1.39 -2.42 -2.26 -1.59 0.07 0.03 0.54 0.64 0.33
1.76 2.02 -1.52 -0.77 0.67 0.5 -2.71 -4.49 -0.38 -0.17 0.33 0.42 -4.4 -3.91 - -3.79
0.9 1.52 -1.37 -1.68 -0.5 -0.43 -0.27 -0.84 -1.26 -1.27 -1.05 -0.56 0.51 0.56 0.15 0.78
-0.97 0.94 -1.8 -1.55 -1.5 -1.82 -0.55 -1.22 -2.09 -4.04 -2.67 -0.58 1.36 1.16 1.17 1.6
1.04 2.26 -3.69 -2.03 0.4 -0.26 -0.5 -4.54 - - -0.02 -2.54 0.03 -0.06 0.78 0.1
0.68 2.12 -3.45 - -0.51 -0.16 -2.54 -3.79 - - -2.77 -1.88 1.05 0.54 0.44 1.51
0.43 1.0 -0.46 -2.15 -0.8 -0.52 -0.17 -0.55 -0.93 -0.8 -0.87 -0.31 0.56 0.56 0.84 0.72
0.44 1.62 -1.01 -1.8 -1.22 -1.68 -0.53 -1.17 -0.89 -1.42 -0.62 -0.24 0.57 0.33 1.08 0.71
0.86 1.83 - -1.27 -1.06 -1.64 -1.86 -1.32 - -2.55 -2.51 -2.62 1.31 0.81 1.28 0.65
0.49 1.97 -1.94 -0.79 -1.01 -0.79 -0.52 -1.87 - - -2.24 -2.34 0.97 1.26 0.94 0.16
0.49 2.52 - - 0.18 -0.57 -1.2 -3.18 - - -0.87 -0.98 - 1.61 - 1.26
-0.85 0.87 -3.97 - -2.28 -2.37 -1.98 -5.02 - -3.61 -3.51 - 1.35 1.63 -0.0 2.6
-0.05 1.31 -2.09 -1.55 -0.56 -0.1 -0.32 -0.77 -1.0 -2.36 -0.59 -0.29 0.8 0.84 0.43 0.94
1.0 1.77 -1.3 -0.77 -0.56 -0.04 -1.08 -2.52 -0.47 -0.85 -1.93 -2.67 0.13 0.82 0.15 0.7
1.0 3.5 -3.67 -5.34 -0.22 -0.49 -5.34 - - - -0.6 -1.78 - - - -
-0.11 1.54 -1.69 -2.58 -1.91 -0.89 -0.57 -1.57 -1.47 -3.25 -0.87 -1.25 1.43 1.23 -0.67 1.47
-0.12 1.12 - -2.14 -0.87 -1.02 -1.47 -2.51 - -4.15 -3.12 - 1.5 1.79 0.08 1.84
0.86 1.58 -0.99 -1.84 -0.35 0.06 -0.3 -1.03 -1.2 -2.32 -1.54 -1.58 -0.04 0.41 1.15 0.52
0.55 1.78 -1.48 -1.75 -0.33 -0.17 -1.17 -0.98 -1.32 -1.61 0.45 -0.57 0.56 0.11 -0.05 0.61
0.58 2.03 -0.36 -0.96 -0.55 -0.44 -0.51 0.0 -1.68 -1.94 -2.58 -1.42 0.15 0.29 -0.13 0.71
0.39 1.36 -0.46 -0.6 -0.24 0.15 -0.82 -0.79 -0.06 -0.54 -0.52 -0.39 0.1 0.4 0.34 -0.2
1.33 3.38 - - 0.78 0.43 - - - - - - - - - -
-0.12 0.85 -1.22 -1.75 -0.69 -1.18 -0.62 -1.08 -1.06 -1.87 -1.11 -0.8 1.04 1.17 1.19 1.0
0.93 1.9 -0.65 -1.88 -0.08 -0.14 -0.44 -1.22 -0.02 -1.34 -1.05 -1.31 0.1 -0.3 0.24 0.12
0.36 1.06 -3.22 -3.89 -1.09 -1.68 -1.89 -1.14 -2.07 - -1.56 -3.67 1.28 1.3 1.84 0.89
0.9 2.21 -0.42 -0.07 0.0 0.57 -2.11 -1.56 0.21 -0.74 - - 0.47 -1.63 - 0.35
-0.51 0.57 -3.03 -4.37 -1.95 -2.1 -0.92 -1.75 -1.08 -2.21 -2.89 -2.54 1.62 1.79 1.44 1.04
-1.87 1.82 -2.02 -2.17 -2.24 -2.28 -0.74 -2.46 - - -2.57 -3.26 1.73 1.16 0.87 1.52
0.84 1.85 -0.73 -1.13 -0.29 -0.54 0.34 -0.53 -1.52 -1.86 -1.01 -0.63 0.15 -0.01 -0.13 0.39
0.67 1.42 -0.49 -0.79 -0.37 -0.34 -0.04 -0.77 -2.06 -2.92 -1.64 -1.05 0.58 0.83 0.48 0.55
1.28 2.94 - -0.47 -2.25 -1.43 - -2.66 - -0.76 - - 0.4 0.26 - 0.41
0.85 1.44 -0.7 -0.82 -0.07 -0.04 -0.61 -2.07 -0.03 -0.15 -1.04 -0.95 0.61 0.09 0.08 -0.07
0.77 1.9 -1.03 -1.5 -0.25 -0.07 -1.45 -1.25 -1.08 -1.78 -1.28 -1.26 0.39 0.54 0.55 0.41
0.34 3.03 -1.37 -1.78 -2.82 1.16 -1.14 0.24 -0.8 -3.65 - -3.13 -2.36 -2.14 -0.8 -3.49
2.22 2.84 -1.06 - 0.06 -0.51 0.07 - - - -2.37 -0.48 - - - -
0.95 2.34 -0.0 -1.67 0.07 -1.09 -1.78 -1.35 -3.54 -2.42 -2.65 -2.01 0.28 0.03 0.56 0.15
0.14 1.27 -0.45 -1.37 0.04 -0.03 -0.49 -1.05 -0.06 -0.23 -1.32 -0.65 0.42 0.65 0.48 0.02
-0.16 2.54 0.12 -1.05 0.34 -0.01 -0.11 -0.89 -3.4 -0.76 -1.31 -3.41 -0.47 -0.15 -0.08 -2.18
-1.65 3.45 - -0.52 1.28 0.7 - - - - - - - - - -
2.26 2.22 -1.39 -0.22 -1.21 0.87 -1.53 -6.79 - - -5.82 -4.93 -0.39 -1.26 -1.26 0.07
0.7 1.12 -0.63 -1.52 -0.91 -0.51 -0.4 -0.77 -0.69 -1.41 -0.8 -0.36 0.58 0.68 0.54 0.78
0.88 1.31 -0.45 -1.29 -0.54 -0.17 0.37 -0.72 -1.38 -1.96 -0.55 -0.45 0.21 0.29 0.5 0.28
0.18 1.07 -0.69 -1.01 -0.24 -0.37 -0.04 -0.94 -0.95 -1.37 -1.34 -0.87 0.75 0.96 0.63 0.6
-0.79 0.78 -1.78 -2.27 -1.36 -1.2 -1.91 -2.25 -3.65 -3.75 -4.07 -4.4 1.61 1.65 1.08 1.74
0.05 1.54 -0.86 -1.47 -0.32 -1.02 -0.7 -1.26 -3.28 -4.92 -3.3 -1.56 0.62 1.32 1.35 0.72
0.84 2.0 -0.45 -1.43 -0.52 -0.46 0.15 -0.8 -0.02 -0.73 -1.0 -0.2 -0.39 -0.62 -0.06 -0.56
- 2.99 -0.73 -0.4 0.73 -0.76 - - - - - - - - 2.16 -
0.08 2.34 -3.12 -3.62 -2.91 -1.05 0.09 -1.35 -3.54 -3.9 -1.49 -1.8 1.21 0.7 -0.25 1.02
- 3.41 -2.45 - -0.32 -1.48 - - - - - - - - 2.02 -
0.21 1.0 -0.7 -1.31 -0.22 -0.71 0.31 -0.67 -1.6 -1.58 -0.48 -0.41 0.41 0.66 1.05 0.45
1.25 3.39 -1.17 -0.15 0.12 -1.06 - - - - - - - - -1.98 -
1.39 2.4 -0.67 -0.07 -0.81 0.07 -3.88 -2.82 -1.8 -2.33 -0.88 -3.98 0.47 -0.13 -2.64 0.17
-0.33 -0.15 -2.61 -3.79 -1.45 -2.04 -2.37 -2.41 -3.12 -3.44 -2.37 -1.72 1.8 1.79 1.41 1.48
-0.1 3.1 -1.01 -0.44 0.13 0.35 -0.81 -3.41 - - -0.22 0.09 - - - -1.67
0.14 2.98 -2.99 -4.66 -2.86 -3.03 0.66 -2.47 - - -1.0 -0.62 -0.27 -1.0 0.22 0.26
0.75 1.08 -0.78 -0.78 -0.31 -0.36 0.36 -0.34 -0.86 -1.16 -0.66 -0.17 0.41 0.26 0.39 0.01

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.