Heatmap: Cluster_18 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - 2.07 2.81 1.61 -0.14 - - - - - - - -0.29 - -
-3.95 -2.71 0.48 2.48 -0.39 0.87 1.62 -2.19 - - - 0.28 - - 0.78 -
-3.49 2.32 0.57 1.16 0.34 1.87 -5.24 -2.65 -0.77 -0.83 -1.04 -2.37 -4.25 - -3.27 -3.37
- - 0.64 2.04 -0.03 3.2 -2.78 - - - - - - - - -
-7.03 -0.16 1.06 1.39 0.29 2.21 -0.37 0.2 -0.97 -2.05 -0.23 -0.56 -3.34 - -3.37 -2.88
-5.04 - 1.79 1.57 1.68 2.45 -2.45 -6.31 -3.67 -5.61 -2.4 -2.36 - -5.42 - -2.45
-2.94 - 0.46 2.01 1.33 1.95 0.86 0.19 0.18 - - - - - - -
- - 0.58 2.14 - 2.42 - -1.68 -0.41 - - - - - 1.88 -
- - 1.07 1.4 0.61 0.45 1.13 - - - - 0.05 - - 2.37 -
-1.84 0.26 0.06 0.67 0.97 0.81 0.12 -0.26 -1.76 -1.5 0.03 0.23 -1.17 0.01 0.47 -0.78
- - 1.81 3.31 0.16 0.51 - - - - - - - - - -
- - - 1.96 1.27 - 0.47 -1.84 0.98 - -0.51 2.19 - -0.36 - -
- - -0.18 2.52 - 2.64 - 0.85 - - - 0.43 - - - -
- - - 4.0 - - - - - - - - - - - -
-2.63 - 0.8 2.95 1.67 -0.23 0.94 - - - - -1.2 - - - -
- - 0.66 2.22 0.21 2.22 -0.86 -4.11 - -5.29 1.44 -0.78 - - - -
- - - 3.53 - 2.16 - - - - - - - - - -
- - 0.22 2.77 1.28 2.14 -1.11 -4.72 - - -3.11 -4.22 - - -0.95 -
-1.2 2.39 0.89 1.3 0.79 1.57 -3.18 -3.2 -3.34 -4.87 -3.09 -2.94 -1.48 -2.58 -4.21 -2.72
-2.44 -6.26 0.29 1.96 0.24 2.43 -0.06 -2.43 -6.76 -5.38 -1.47 -0.79 -0.5 -1.72 -1.35 -0.73
- - - 2.5 - 1.13 - - - - - - 3.03 - - -
-0.76 -0.54 -1.25 -0.69 -1.34 0.54 -2.77 -1.31 -3.27 -3.12 -1.43 -1.3 1.45 0.82 1.05 1.89
-0.3 0.05 1.75 1.61 -0.61 0.3 -0.3 -0.17 -0.84 -0.2 -0.72 -0.25 0.34 - - -
- - 1.03 2.67 0.55 2.17 - -2.86 - - -1.41 -0.52 - -1.34 - -
-2.33 -7.94 0.67 1.34 0.64 1.39 -0.95 -1.91 -3.84 -5.78 -1.93 -0.69 0.46 -0.38 0.18 1.3
- - -0.42 3.08 - 2.55 -0.09 - - - - - - - - -
- 1.67 - 0.72 -0.48 2.16 - - - - - - - 0.21 2.28 -
-0.07 -3.46 -0.8 0.39 -0.17 1.76 -3.2 0.1 -1.38 0.16 -2.41 -1.98 1.17 -1.01 -3.64 1.51
- - - -1.87 - - - - - - - - 2.49 2.04 0.66 2.14
- - 1.07 1.68 1.1 2.71 - -6.44 - - -0.12 0.1 - - - -
-2.7 -2.71 0.06 0.04 0.24 1.65 -2.39 -2.74 -4.37 -3.67 -1.39 -0.94 0.71 1.04 1.24 0.92
- - -0.08 1.32 -1.44 1.77 - - - - - -5.25 1.34 1.06 1.24 0.83
- - -0.02 2.9 2.22 1.07 -0.96 - - - -1.92 - - - - -
-2.66 -2.64 0.82 1.72 0.48 2.17 -1.15 -1.74 -0.55 -0.48 -0.4 -0.58 -1.44 -1.75 -2.59 -1.61
- 0.41 - - -1.17 0.26 -0.97 -2.38 - - - - 0.61 2.32 1.58 1.49
-1.79 2.04 0.33 0.89 0.92 2.08 -2.34 -1.13 - - - - - -2.44 0.63 -
-3.17 -1.68 -0.74 1.15 1.2 1.16 0.97 -2.35 -1.62 -3.38 -0.88 0.55 -1.39 -0.9 1.35 -2.52
- -5.59 - -2.98 - -4.91 -4.59 -5.6 -4.3 -3.24 -4.21 -2.72 2.52 1.59 0.78 2.31
-2.7 - 0.15 1.48 - -1.57 -0.71 - - - - -1.49 0.62 3.19 -10.39 -
- - 0.96 - - 2.58 - - - - - - - - - 3.01
-1.02 1.15 -0.26 -0.16 -0.35 0.35 -3.14 -1.52 -4.89 -5.61 -3.74 -2.11 1.06 0.87 1.74 0.5
- -2.19 0.37 1.96 0.36 2.66 0.29 -8.87 - - -0.96 -0.07 - - -1.74 -
-1.6 1.37 1.05 1.07 0.13 2.19 -2.32 -4.5 -7.83 -5.4 0.6 0.31 -7.06 -7.35 -2.56 -4.1
- 2.38 - 3.35 - - - -0.67 - - - - - - - -
-2.87 1.16 -0.04 0.84 0.08 0.39 -2.16 -2.18 -3.03 -4.05 -1.91 -2.48 0.15 1.36 1.5 -0.14
-2.25 -0.01 0.18 2.11 0.31 1.16 1.25 0.63 - - - - - -0.59 - 0.38
-1.43 1.96 -0.51 1.33 0.08 0.43 0.32 -4.43 -3.17 -4.11 0.01 0.14 -0.04 -1.95 -0.88 -0.39
- - - -0.3 - -2.67 - - - - - - 2.96 1.75 - 1.95
- - - 3.48 2.27 - - - - - - - - - - -
- - 1.58 2.33 0.71 2.66 - - - - - - - - - -
-7.33 -4.09 -1.58 -1.84 -2.15 -0.43 - - - - - -4.77 1.46 1.15 2.58 1.75
- 1.53 -0.42 2.38 - 2.36 - -1.77 - - -0.73 0.17 - - - -
-4.66 - -2.15 -1.96 -2.38 -1.57 - -7.5 - - -4.89 -4.26 1.72 2.42 2.14 0.86
-3.03 - 1.22 2.05 1.01 2.88 - - - - - - - - - -
- -0.4 1.8 2.56 -0.66 0.19 - -1.13 -0.19 - 0.91 -0.2 - - - -
-2.87 -0.3 0.68 2.22 0.81 2.21 -3.64 -5.56 -2.4 -2.9 -0.13 -0.07 -5.72 -7.08 -3.74 -6.43
- -5.64 -3.03 -1.24 -3.32 -3.48 - - - - - -4.46 2.0 1.67 2.24 1.72
- 0.13 - 1.93 - - - -1.11 0.88 - - - - - 3.14 -
- -1.67 0.56 2.34 0.99 2.29 0.63 -5.96 - - -3.65 -5.75 -2.27 -1.8 -3.37 -
- 1.11 1.34 2.21 0.29 0.47 - -2.92 0.77 -0.17 -0.13 -1.24 - - - -
-6.95 2.29 0.55 1.12 -0.89 1.7 -6.2 1.14 -0.95 -0.77 -6.74 -3.73 -4.49 -4.36 -3.51 -3.39
1.71 - - 1.83 - - - - - - - - - - - 3.2
-1.02 - -0.37 0.67 0.55 0.15 -4.5 -0.72 - - -1.58 -3.27 1.26 0.16 0.65 2.13
- 2.58 - 3.32 - - - - - - - - - - - -
- -1.28 -0.57 0.77 0.54 0.99 - - - - - - 1.33 - 2.3 1.21
-7.01 0.63 -0.96 -0.3 -0.92 -0.48 -3.01 -2.8 -4.69 - -5.59 - 1.93 0.93 0.96 1.95
- 1.7 -0.13 2.91 -1.01 1.16 -0.8 -1.81 - - -0.44 - - - - -
- - - 2.8 - 2.9 - -2.3 - - 0.43 - - - - -
- 1.76 1.1 1.88 0.09 2.0 -0.01 -4.83 -6.67 -5.87 -1.63 -1.66 - -7.02 -5.94 -7.04
- -0.41 -1.16 2.87 -0.45 1.97 - -2.82 - - -1.49 -0.59 - - 0.72 -
- - 0.78 2.6 0.75 0.71 - -0.83 -2.35 - - - -0.08 - 1.48 -1.21
-0.22 -0.77 0.33 1.0 0.37 1.4 -0.32 -0.46 0.29 0.24 0.1 -0.57 -0.96 -1.63 -1.65 -0.87
- - -4.84 -3.92 -4.72 -5.87 - - - - - - 1.69 2.68 2.3 0.39
- - - -0.03 - -0.4 - - - - - - 1.53 - 3.51 -
- - -1.43 1.91 - 2.36 - - - - - - - 0.38 2.45 -
- -0.47 - 0.49 - 0.12 -0.52 - - - - - - 1.96 3.03 -
- - 1.19 1.11 1.32 1.96 - -3.47 - -0.18 - - - - 2.07 -
- - 1.71 1.04 0.11 2.26 0.53 -1.45 - - - - - -0.79 1.28 -
-0.52 0.18 0.31 0.9 1.17 1.28 0.24 -0.94 -0.31 -1.21 0.15 -0.31 -1.14 -1.62 -1.98 -1.04
-5.14 - 0.43 2.51 -2.28 2.44 -0.78 -5.36 - -3.95 0.84 -0.61 -4.25 -6.35 -3.28 -5.37
-6.47 1.47 0.66 1.27 1.99 1.48 -0.12 -6.01 -4.95 - -0.52 -0.51 - - - -3.44
-1.21 -2.37 0.29 0.85 0.53 1.44 -1.3 -0.57 -0.93 -0.55 0.06 -0.3 0.14 0.19 0.23 -0.66
- - 1.54 2.63 0.07 0.94 1.28 - - - - 0.57 - - - -
- - - 2.53 0.31 3.17 - - - - - - - - - -
-1.47 1.43 -0.06 0.76 0.74 0.42 0.1 -1.46 -0.34 -1.5 -0.03 -0.54 -0.44 -0.36 -0.57 -0.23
- - - 2.28 - - - -0.74 0.95 - - 1.94 2.26 - - -
-9.03 0.89 0.77 0.82 0.02 2.36 -0.45 0.21 -2.07 -3.04 0.14 0.22 -7.34 -7.43 - -7.46
- - 0.12 2.61 1.83 1.44 1.23 - - - -2.37 - - - - -
-0.99 -3.2 -0.48 2.49 1.0 1.64 1.63 -0.5 - - -2.98 - - - - -
-7.9 - 1.35 2.69 0.61 2.13 -0.88 -6.94 - - -1.07 -3.72 - - - -
-0.74 -0.39 0.43 0.88 -0.09 1.36 -0.32 -1.55 0.36 -1.79 -0.75 -0.45 -0.07 -0.25 -0.17 0.28
-2.16 - 1.72 1.34 0.4 2.66 -4.3 -7.89 -2.62 -2.24 0.38 -1.46 -3.31 - - -3.43
-0.35 - 0.97 1.96 -0.43 2.23 0.59 0.79 - - -1.48 -2.17 - -2.92 - -
-1.1 -2.01 0.38 0.76 -0.51 1.88 -0.71 -0.74 -2.2 -2.37 -0.75 -1.02 0.71 0.83 -0.12 -0.22
1.59 - 0.77 1.69 - 0.32 - -1.88 0.93 - - - - - 1.66 0.57
- -5.42 0.62 2.35 1.13 1.97 -4.56 -8.12 -3.9 - -2.81 -2.33 -0.1 -0.7 -1.0 -0.43
0.23 0.38 0.34 1.29 0.41 1.46 -1.59 -2.87 -4.0 -4.1 -2.2 -2.4 0.57 0.67 -0.44 -0.11
-1.02 0.26 0.71 1.06 0.53 1.18 -0.13 -1.31 -0.34 -0.96 -0.28 -0.4 -0.67 -0.75 -0.27 -0.67
- - - 3.22 - 2.74 - - - - - - - - - -
- 2.22 0.52 -0.47 0.65 2.62 -2.47 - 0.36 - - - - - - -
- - - - - - - - - - - - - - - -
-1.86 -4.69 0.59 1.36 -1.17 1.87 -2.6 -4.66 -0.82 -1.19 0.63 -0.49 0.83 -0.68 - 0.7
- - -0.56 -0.22 - 0.16 - - -1.53 - -1.44 - 1.42 2.59 - 1.99
-2.68 - -4.89 -1.54 -2.2 -0.1 - -1.22 - - - - 1.76 1.19 2.07 2.01
- 1.48 -1.42 1.72 1.88 2.25 - - - - - 0.15 - - - -
-2.89 1.89 -0.01 0.92 0.57 1.67 - -3.1 -2.4 0.65 -2.31 -0.41 - -1.2 -0.13 -1.23
-2.26 - -3.1 -1.6 -1.18 -1.27 -5.89 -5.3 - -4.15 -2.94 -1.17 1.97 1.61 2.01 1.49
-0.24 -1.03 0.09 1.04 0.16 1.87 -0.05 -0.55 -3.44 -4.07 -1.75 -0.52 0.05 -0.29 0.19 -0.02
- - 0.39 2.08 0.48 2.21 - -3.39 - - - -0.0 - 0.18 - 1.15
-1.5 0.34 0.06 1.26 0.32 1.08 -0.59 0.02 -1.13 -0.83 -0.81 -0.07 0.01 -0.87 -1.34 0.5
-1.87 -0.4 1.04 1.13 -0.21 2.93 - - -2.09 - -1.99 0.81 - - - -
-0.98 0.77 0.81 1.36 -0.62 1.87 -0.42 -0.91 0.72 -1.87 -1.68 -1.25 -1.46 -1.48 -3.58 -1.3
- - - 0.65 - - -1.39 0.37 -0.07 1.56 1.03 2.24 - - - 1.06
- -2.4 1.06 3.09 0.83 1.79 - - - - - - - - - -
1.48 - - 3.72 - - - - - - - - - - - -
- - -0.12 2.8 - 3.02 - - - - - - - - - -
-4.3 2.36 -0.67 0.44 -3.35 1.81 - - - - - - 0.43 -0.08 0.99 -0.11
- -0.18 0.96 1.48 0.14 2.12 -1.28 -0.2 -0.56 -1.57 0.53 -0.8 - -3.7 -1.63 -2.14
- - 0.85 1.18 - 1.39 - - - - - 1.4 - - 2.74 -
2.57 - - - - - - 3.33 - - - - - - - -
- - 0.81 3.26 1.35 0.78 - -1.44 - - - - - - - -
- - - - - - - - - - - - 2.62 1.39 0.13 2.62
-1.34 0.57 -0.82 -0.28 -0.92 -0.19 -3.3 -2.4 - - - - 1.98 1.27 1.58 0.74
- - 2.1 2.47 - 0.11 - -2.68 - -0.24 - 2.03 - - - -
- - 0.19 1.8 -4.26 3.19 - - -1.23 0.42 -1.72 -2.82 - - - -
-2.01 2.32 - 0.09 0.9 2.04 0.68 - - - - -0.68 - 0.58 - -
-0.76 2.03 1.11 1.34 0.55 2.07 -3.28 -4.05 -8.68 - -2.94 -3.44 -2.43 -3.21 - -1.9
- 0.43 - 1.48 - 2.12 - - - - - - - - - 2.91
-4.53 -4.28 1.57 1.93 -0.25 2.45 1.21 -6.99 - - -2.68 -1.46 - - - -
- 1.0 - 2.98 2.61 - - - - - - - - - - -
- 2.7 0.08 0.43 - 1.65 0.99 -1.61 0.7 - - - - - - -
-2.88 - 0.94 1.56 -1.35 3.14 - -0.89 -3.48 - -0.57 -1.49 - -3.24 - -
- - 2.0 1.73 0.94 2.73 - -3.13 - - - - - - - -
- -0.41 0.51 2.46 - 2.1 - -1.67 - - - - - 1.88 - -
- - 1.99 2.76 1.48 1.31 - - - - - - - - - -
-4.08 2.37 0.31 1.19 0.93 2.3 -7.5 -5.62 -4.26 -5.62 -2.65 -3.95 - -7.01 -4.94 -4.04
-3.27 -2.77 -0.62 0.75 -0.56 0.91 -1.61 -1.66 -4.1 -4.31 -2.89 -2.11 1.59 2.02 -1.59 1.22
-0.31 -0.97 0.63 1.5 0.68 1.85 -0.31 -1.62 -2.86 -2.98 -0.92 -1.84 -0.28 -0.47 -0.99 -0.21
- - - 1.96 - 2.59 -0.07 1.48 - - - 1.22 - - - -
- - 1.72 2.8 0.08 2.01 -3.04 -3.51 -2.29 -3.24 - -3.3 - - - -
-0.76 1.58 0.6 1.06 0.75 1.4 0.53 -0.16 -1.97 -1.51 -0.86 -0.81 -3.35 -4.53 -2.14 -3.75
- 2.1 0.67 0.49 -0.52 2.12 -3.32 -0.55 -1.08 -2.02 -1.99 -1.09 - -1.83 0.24 -
- - - - - - - - - - - - 2.1 1.85 1.65 2.31
- - 1.5 1.36 -0.19 - - -0.99 - -0.63 - - - 0.5 1.57 2.06
- - - 0.99 - - - - - - - 1.23 - - 3.54 -
- - - -4.95 -6.74 -4.58 -7.54 -6.08 - - - - -1.26 1.51 3.64 -3.08
-0.52 0.66 0.13 0.81 0.81 0.48 -0.8 -1.81 -0.44 -1.04 -0.39 -0.12 -0.03 0.04 -0.05 -0.03
- - 1.86 2.78 0.99 1.82 - - - - - - - - - -
- - - 2.84 - 3.15 - - - - - - - - - -
- - - 4.0 - - - - - - - - - - - -
- - 0.63 1.92 0.72 1.92 - -3.38 -3.97 - - -2.39 -2.63 -1.72 2.09 -2.75
- 1.37 1.05 2.2 1.45 1.48 -3.12 -0.58 - - - -3.47 - -3.22 - -2.25
-4.13 - -1.61 1.8 -0.03 1.64 -5.36 -2.36 -5.14 - - - 1.31 0.3 -0.22 1.68
- - -3.27 1.24 -0.56 2.03 -2.94 - - - - - 0.22 1.24 0.61 1.84
- - 1.02 2.18 - 2.91 -0.6 0.35 - - - - - - - -
- - 0.68 2.41 0.86 2.49 - - - - - -0.04 - -2.97 -0.9 -
-0.62 0.67 0.3 1.54 0.86 1.27 -1.53 -3.07 -1.86 -2.17 -0.15 -0.89 -0.35 -0.0 -0.46 -1.04
-6.98 -4.17 0.04 2.52 -2.37 2.03 -4.16 -2.09 1.63 -1.4 -1.78 -0.47 - -5.26 -3.19 -
- - - - - - - - - - - - 3.21 2.47 - 0.28
- - - - - 4.0 - - - - - - - - - -
-7.11 - -2.6 2.44 -0.04 1.99 2.37 -3.11 -5.73 -5.67 - -3.42 -4.39 - - -
- -0.96 -0.15 2.15 -0.59 2.63 -0.0 -2.99 - -2.35 -3.89 -2.41 -1.13 -1.49 -0.74 -1.84
- - -0.94 2.92 -2.27 2.25 1.39 -2.47 -3.83 -3.77 - - - - - -
-4.36 -2.15 1.46 1.27 1.23 2.39 - -4.52 - - -0.09 -0.79 - - 0.47 -
- - - -0.14 - -1.5 -1.15 - - - - 0.1 2.44 - 2.41 1.31
- 0.71 0.51 0.76 1.54 2.34 -0.05 - - - 0.43 -0.09 - - - -
-3.14 1.09 0.71 1.51 1.85 1.2 0.32 -4.85 -5.89 - -1.67 -1.73 -0.95 -1.88 -3.56 -0.8
- - 1.55 1.62 - 1.74 - -0.52 - - -0.37 2.11 - -0.22 - -
-3.38 -1.88 - -0.64 - -0.35 - -4.51 - -3.36 - - 1.55 2.72 1.07 1.29
- - 0.94 0.54 -0.25 2.43 - - - - -0.71 1.18 - -0.56 1.51 -
-0.12 1.71 - 2.02 - 2.24 1.6 - - - - - - - - -
- - - 2.03 - 2.66 - - - - - - - 2.48 - -
-5.39 -1.25 1.5 1.16 0.62 2.73 -6.14 -3.94 -3.53 -3.68 -0.71 0.14 - - -1.72 -3.95
- - 0.61 1.79 1.22 0.57 -2.39 -2.37 - - -0.05 1.85 - - 1.17 -
- -0.72 -0.87 2.81 1.23 2.45 - - - - - - - - - -
-2.22 - 0.6 1.29 -0.19 2.31 -5.07 -3.48 -0.65 -0.44 -0.56 -1.51 0.09 -0.13 -1.52 0.19
-0.26 - 1.18 2.4 1.56 1.98 -2.73 -5.36 -2.99 - - -3.01 - - - -1.86
-4.67 0.94 0.94 1.84 0.92 1.79 0.2 -2.02 -1.09 -3.34 -0.76 -1.36 -3.76 -5.14 -4.43 -3.17
- - 1.7 2.58 - 2.76 - - - - - - - - - -
- - - 2.59 - 2.81 1.58 - - - - - - - - -
-3.65 - -0.15 1.94 0.39 2.78 1.45 -5.42 - - -2.02 - - - - -
-2.59 -0.6 -1.27 -0.54 -1.33 0.4 -3.38 -2.76 -4.4 - -5.05 -3.57 0.98 1.84 1.82 1.52
- - -0.86 2.47 0.86 2.1 - 1.08 -0.3 -0.23 - - - - - -
- - - 2.11 2.48 2.33 - 0.09 - - - - - - - -
-1.03 1.66 0.43 0.3 -0.1 1.02 0.38 -4.1 -0.46 0.92 -1.38 0.14 -0.12 - - -1.24
-0.74 0.37 0.02 1.33 -0.86 0.36 -0.74 -1.05 -0.27 -0.19 0.35 0.07 0.3 -0.61 -0.67 0.17
-10.93 0.68 - 0.18 - -0.38 - - - - - - - - 3.64 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.