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Heatmap: Cluster_207 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-1.03 1.32 -1.77 0.89 1.36 0.53 -1.44 -1.63 - - - -0.19 0.14 - 1.12 1.02
-1.06 1.05 0.21 0.33 2.3 -1.45 -1.22 -1.06 -0.38 0.85 -2.48 -0.87 -1.42 -2.61 -1.4 -0.69
- 2.17 -0.42 -2.57 2.82 0.5 1.0 -5.4 - - -4.79 -3.9 - - - -
-0.03 -0.8 - - 3.29 - - 0.34 - - - - 1.76 - - -
1.27 0.76 0.65 1.4 1.78 - 0.71 -2.0 0.63 -0.31 - - - - - -
- - 0.11 2.44 3.25 - - - - - - - - - - -
- - - - 1.18 -0.09 -1.32 -2.99 - -2.01 - - 0.85 1.49 1.82 1.95
-2.67 -2.68 -2.7 -3.29 -0.98 -3.65 -3.65 -1.45 -6.22 -5.16 -4.12 -3.64 1.93 2.44 1.01 1.56
-5.03 -0.65 - - 0.31 -0.73 -0.82 -2.0 -3.41 -2.36 - - 1.8 1.92 1.63 1.0
- - 1.49 0.24 3.04 -0.13 - 0.26 - - - - - 0.73 - -
- 2.37 - - 2.08 1.43 1.28 -0.93 - - - - - -0.04 - -
- - - - -0.51 - - -1.4 - - - - - - 3.9 -
- - 2.38 - 3.43 - - - - - - - - - - -
- - - - 3.02 -2.92 - 2.96 - - - - - - - -
- - - 0.89 1.69 - - - - - - - - - 3.45 -
- 1.74 -0.16 -0.83 2.77 1.61 - - -0.59 - - -0.6 - - - -
-1.62 -1.11 -0.56 0.19 2.11 1.07 -1.23 1.76 - - -3.48 -1.26 - -1.01 -1.26 0.81
- -2.38 -3.12 -2.79 -0.67 -0.83 -3.21 -3.2 - - - - 2.65 1.55 1.57 0.99
- 0.73 2.02 - 3.36 - - - - - - - - - - -
-6.26 0.93 -2.26 -1.13 2.17 -2.47 -3.79 -0.12 -2.04 -2.31 -7.08 - 0.58 -1.3 2.14 -0.04
0.85 - - - 2.95 2.1 - -0.96 - - - 0.72 - - - -
- - - - 3.81 - - 0.98 - - - - - - - -
- - - - 3.64 - 1.83 - - - - - - - - -
-0.34 0.9 - - 0.62 0.47 - - - - - - - - 3.38 -
-0.83 1.51 - - 0.73 1.72 -1.23 - - - 0.26 - - - 2.59 -
-4.85 - 0.37 -1.44 2.27 -0.55 -1.3 -0.93 -1.21 -2.47 0.81 1.16 0.15 0.19 - 0.02
-0.83 0.34 -1.08 -0.16 1.48 -1.03 -1.83 -0.83 -3.06 - - -1.47 - 1.27 1.01 1.92
- - - - 1.04 - - - - - - - - - 3.8 -
-2.52 -1.33 -4.63 -2.68 -1.07 -1.63 -3.33 -2.37 - -3.95 -3.9 -3.01 2.35 2.29 -0.18 1.59
-1.64 3.31 - -0.25 2.3 - - - - - - - - - - -
-0.55 - - - 2.98 1.94 -1.68 -1.37 -0.38 0.47 - -0.4 - - - -
- -0.73 -0.12 -0.79 1.03 - - - - -1.14 -1.44 - - 0.28 2.34 2.25
- - - - 4.0 - - - - - - - - - - -
-2.72 -4.47 -1.35 - 1.44 0.73 -0.15 0.62 - - -3.27 -2.38 1.44 1.27 - 1.66
- -1.7 - - 1.76 -0.14 -0.78 - - - - - - -0.3 2.55 2.05
-6.46 0.93 -1.46 -0.09 1.01 2.31 0.63 -0.62 0.5 -0.9 0.17 -0.9 - - - -
1.03 1.11 -2.86 - 2.61 -0.08 - - 0.89 -1.35 0.91 -0.97 - - - -
-0.35 -1.87 -2.27 -3.48 0.68 -0.84 -4.61 -5.08 - - -3.15 -2.27 2.11 1.68 1.32 1.07
- 0.78 1.37 - 2.82 - 1.28 1.16 - - - - - - - -
-1.12 1.9 -1.74 -0.39 0.37 - -0.83 -2.12 - - -1.01 - - 0.65 2.72 -
- - - - 2.25 1.4 0.77 -2.53 - - - - - 2.75 - -
-2.94 -0.4 - -0.07 2.02 -0.02 0.65 -1.53 - - -1.28 -1.39 0.9 -0.19 1.88 -
-2.02 -1.96 -0.99 -1.42 0.5 -0.73 -0.75 -1.33 -1.81 -2.83 -1.72 -2.27 1.78 1.6 0.46 1.51
- - 0.79 0.8 2.92 -0.57 0.12 -0.73 1.05 - -0.86 - - - - -
- - - - 3.19 0.74 - 1.39 - - - 1.36 - - - -
- - 0.05 - 3.74 - - - - - - 0.68 - - - -
- - 1.35 -0.19 1.48 1.25 -0.78 1.58 -2.54 -0.16 -2.45 - 0.39 - -0.22 -1.32
- - - - -3.95 - - -4.42 - - - - 1.16 0.83 2.72 2.41
- - - - 3.34 - 2.55 - - - - - - - - -
-0.16 -1.17 -0.14 0.26 1.28 -0.18 -0.01 -0.42 -0.48 -2.07 -0.2 -0.14 0.36 0.47 -0.11 0.24
-0.28 0.89 -0.75 -1.2 1.65 0.98 0.85 -0.45 -0.07 0.29 -2.09 -1.46 -0.84 -3.52 -1.45 -0.23
0.72 0.54 - - 2.0 1.11 -1.12 0.21 - - - 0.13 1.46 0.37 - -
1.16 - - - 3.23 0.77 - - - - 0.48 0.38 - - - -
-1.91 - - -0.8 2.33 -1.16 -1.8 0.98 - - - 2.02 - - 1.76 -
- - 0.36 1.48 1.84 0.67 0.14 0.51 -1.54 -0.48 -1.44 0.62 - - -0.21 -1.31
- 0.91 0.23 -1.7 1.82 1.59 - 0.51 0.62 -0.75 -1.3 0.22 - - -0.07 -
- -0.31 -1.19 - -1.08 - - - - - - - 2.71 1.2 1.68 1.17
-5.89 -5.24 -3.65 -4.32 -2.36 -4.36 -3.52 -3.25 - - - -5.08 2.42 2.54 0.4 1.53
0.11 -2.22 -1.69 -1.35 0.62 - - -1.17 - - - - 0.42 -0.87 2.79 1.69
-2.21 1.83 -2.36 -2.02 1.23 0.62 0.97 -5.03 -0.76 -0.7 -1.67 -0.19 -0.45 - 0.53 0.43
- 2.32 - - 1.76 - - - - - - - - - 2.93 -
-2.82 0.78 -0.22 0.36 1.3 2.4 0.75 0.11 - -2.12 - - - -2.01 0.06 -
- - - - -5.08 - - -4.28 - - - - 2.13 2.65 1.85 0.75
- - - - 0.22 - - - - - - - - 2.91 - 2.88
-0.65 0.81 -1.56 -2.55 1.25 0.54 0.3 0.58 -0.18 -2.15 0.25 -0.01 -1.96 0.41 -0.99 0.21
- - - - 4.0 - - - - - - - - - - -
- 2.94 - - 3.06 - - - - - - - - - - -
-0.14 -0.65 -0.85 -0.86 0.37 -0.55 -0.16 0.07 -0.52 -0.63 -0.18 -1.54 1.09 0.7 0.4 0.84
- - - - 3.48 1.46 - - - - - - - 1.06 - -
-6.69 - 0.93 -0.81 2.1 1.82 -3.4 2.38 -2.15 - - - -3.98 - -3.01 -
-1.24 -2.58 -1.02 1.12 1.43 -0.06 -1.69 1.72 - -0.39 - 0.13 - - 1.86 -
- -5.53 -4.13 - -3.08 - - - - - - -3.7 2.09 1.44 2.4 1.8
-0.27 0.97 -1.41 -0.07 1.04 0.88 - -1.27 0.18 0.24 - -0.83 0.5 0.99 - 0.37
- - - - 4.0 - - - - - - - - - - -
1.67 1.84 - - 3.21 - - - - - - - - - - -
- - 0.71 - 2.36 1.32 0.4 2.01 -1.53 - - 0.04 - - - -
- - - - 2.66 - - 3.27 - - - - - - - -
- - - - 2.34 - - 1.25 - - - - - - 3.1 -
- - - - 2.14 0.69 - 0.33 - - - - - 3.12 - -
- - - - 3.5 - - -0.3 - - - 1.96 - - - -
- 1.24 - - 1.45 2.11 - - -0.06 - 0.03 - - - 2.21 -
-2.66 1.24 -0.83 0.03 2.52 0.85 0.38 -0.18 -4.11 -4.09 -2.4 -1.19 -1.63 -1.83 -1.56 -1.05
- - -0.42 - 1.71 - - - - - - - - 0.39 2.46 2.37
- 0.44 -1.01 -2.99 1.22 - - - - - - -3.76 3.17 1.07 -1.45 -2.54
- 1.42 - - 3.06 2.31 - - - - - - - - - -
- 1.98 - - 2.74 - - - - - - - - 2.43 - -
- -0.23 2.68 0.69 2.83 - - - - - - - - - - -
- - - -1.19 -0.17 0.67 -0.97 -1.76 - - -1.43 - 2.62 0.71 0.78 1.27
- - 0.6 - 1.73 - - - - - - - - - 3.48 -
-0.52 -0.56 -0.18 -0.68 0.41 -0.89 -3.85 -1.28 - -3.55 -1.51 -1.62 1.73 1.28 0.29 1.61
- 1.95 - 2.22 1.95 1.86 - - - - - - - - - -
0.29 1.85 0.55 1.21 2.48 0.84 - - - - - - - - - -
- - - - 2.61 - 1.4 2.26 - - - - - 1.3 - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.