Heatmap: Cluster_49 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-1.57 - 1.67 2.28 0.83 0.6 - -5.01 - -1.54 -0.46 - 0.92 0.41 - -
-0.23 -0.36 -0.15 -0.31 -0.36 0.1 -0.2 -1.02 -0.47 -1.11 -0.38 -0.35 0.23 0.77 0.96 0.91
-0.47 0.29 -1.27 -0.69 -1.04 -1.12 -1.02 -0.03 -1.42 -1.18 -1.12 -0.91 0.77 1.73 -0.08 1.51
- - -0.24 -0.08 -0.96 -0.28 -2.08 -1.74 -0.84 -1.19 -0.16 -1.26 1.31 2.26 1.06 -0.62
0.57 - 2.4 2.32 - 1.69 - - - - - -0.02 - - - -
- - -2.47 -2.72 -2.34 -1.76 -3.73 - - - - - 2.25 2.76 -0.17 1.43
1.2 0.49 0.46 - -0.01 - -0.48 0.76 0.08 0.13 - -1.52 1.78 - - 0.65
- 4.0 - - - - - - - - - - - - - -
- - -0.44 2.53 1.29 1.28 0.58 -3.96 0.05 -2.13 0.22 -1.62 - - -1.88 -
- 2.28 - 0.03 - -0.34 0.03 -0.36 1.85 0.33 -0.64 -0.74 - 0.52 - -
- - 1.23 - -0.29 3.68 - - - - - - - - - -
-2.9 -2.43 0.7 0.04 0.73 1.77 -0.32 -2.06 -1.53 -2.47 0.37 0.78 - 0.71 0.8 -
-0.61 - 0.59 0.41 1.05 1.63 0.51 -1.32 -0.58 0.45 -0.46 -1.58 0.02 -1.08 - -0.1
- - 0.83 2.16 -1.04 2.38 0.16 -3.83 - - - 0.4 - - - 0.62
- 3.13 - 0.35 0.1 -0.02 -0.69 -2.72 - - 0.72 0.61 - - - -
- - 1.47 2.26 -0.41 0.02 -1.2 - - - - -0.95 - -0.72 2.35 -
-1.68 -1.44 1.48 0.24 0.16 -1.45 0.08 0.32 1.17 0.55 0.72 -0.84 -1.51 -1.61 - -0.05
- - 4.0 - - - - - - - - - - - - -
- - 2.39 2.46 0.67 1.88 - - - - - - - - - -
- - -1.23 0.7 - - - -1.9 - - - - 2.26 1.58 - 2.56
-1.86 -1.99 -3.17 - -4.04 - - -1.89 - - - - 1.91 2.45 -0.29 2.32
- - 0.0 1.46 1.87 1.2 -0.25 - -0.41 - 1.27 0.8 - - - -0.79
- - - 3.73 0.36 - 0.55 - - - - - - - - -
- - 2.89 - 1.02 1.86 - - - - 1.56 - - - - -
-0.7 -1.05 0.87 1.47 0.26 2.1 - -2.53 -0.86 - - - 0.46 - 1.43 -
-2.08 - 0.27 -0.43 0.39 0.69 -1.19 -0.59 -4.2 -3.16 -0.95 -1.04 1.94 1.12 0.41 0.36
- 3.06 -0.33 - 1.39 0.64 - 1.42 - - - - - - - -
-1.04 0.2 - -0.87 -1.08 - - -0.07 - - - - 2.28 1.6 - 2.16
- - 0.02 -0.06 0.15 0.79 -2.65 -4.63 - - - -1.42 2.25 0.42 0.91 1.39
- - -0.25 -0.88 -0.16 2.21 -0.96 -2.43 - - - - 0.63 -0.46 2.61 -
- - 2.82 3.16 - - - - - - - - - - - -
- - 1.01 2.42 1.23 2.01 -1.34 - - - - - - - 0.9 -
- - 0.76 1.91 - 1.05 2.0 -3.89 - - - 2.14 - - - -
- - - - - - - - - - - - - - - -
- - 4.0 - - - - - - - - - - - - -
- - 2.07 2.16 0.56 0.86 - - - - 1.43 -0.41 - - - -0.78
- - 1.68 -0.53 1.59 2.33 -2.23 -0.71 - - 0.54 -1.89 - -0.12 - -0.74
-1.62 -2.66 0.18 1.52 0.93 0.11 0.5 -0.32 -2.26 -1.45 -1.52 -0.66 1.74 -1.49 - 0.09
- - -1.66 1.48 0.26 2.57 1.03 -7.12 - - 1.15 -1.1 - - 0.0 -
- - -0.53 -0.16 - - - - - - - - 3.3 - - 2.18
- - 1.95 3.04 0.46 1.35 - - - - - - - - - -
- - - - - - - -0.87 1.38 - - - - - 3.68 -
-2.41 -1.17 - - - 0.98 - -4.24 - -0.93 - -1.0 1.92 1.83 2.31 -
- 4.0 - - - - - - - - - - - - - -
- - 3.05 0.7 -0.54 1.33 -0.33 - - - - -0.04 - 0.15 - -
- - 0.04 - 1.75 2.02 - - - - - - - - 2.92 -
-7.09 -6.85 -4.62 -3.54 -6.09 - - -8.89 - - - - 3.0 1.67 0.84 1.52
- - - -0.29 2.31 2.34 - -0.48 - 0.02 - -0.05 1.29 - - -
- - 2.48 1.82 - 1.45 - - - - - 2.06 - - - -
0.28 -2.14 1.22 1.28 1.63 1.0 -0.74 -1.41 -0.23 -1.5 - -0.57 -0.23 -0.78 - -1.33
-5.47 -5.21 -3.7 -3.37 - -2.93 - -5.02 - - -5.04 -4.14 2.72 1.27 0.65 2.3
-2.1 - 0.55 0.88 0.03 2.26 -0.41 -5.56 - -2.28 -0.25 - - 0.49 1.57 -1.12
- - -0.05 0.29 1.25 1.63 1.87 -0.92 - -1.39 -0.35 -1.46 - -0.24 0.83 -
- - 4.0 - - - - - - - - - - - - -
- - 0.18 2.14 -0.35 2.46 -1.4 -3.08 -7.41 -6.35 1.66 -0.99 - - - -
-0.8 -1.14 -0.7 -1.64 -0.63 0.65 -1.23 -0.25 - - - - 1.18 0.93 1.41 1.9
- 0.97 - 3.7 0.04 - - - - - - - - - - -
- -2.19 -1.92 -0.59 -2.11 -1.96 - - - - - - 1.84 1.97 2.11 1.36
-1.67 - - 0.56 - 0.78 - - - - - - 2.12 2.61 - 1.0
- 3.09 - 0.03 0.82 1.66 - 0.61 - - - - - - - -
-8.53 - - - - - - - - - - - 2.16 2.31 1.77 1.66
-0.81 -1.36 0.59 1.48 1.25 0.94 0.3 -1.09 -1.14 -1.82 -1.05 0.17 - - 1.27 -
- - 2.27 2.01 1.08 1.13 - -0.04 0.92 - - - - - - -
- - -2.06 -4.04 -0.67 -1.6 -2.25 -1.15 - - - - 1.53 2.19 1.67 1.79
-1.0 -4.21 0.67 1.72 0.3 1.5 -0.02 -0.39 -3.71 -1.1 0.87 0.33 -3.74 -4.25 -1.37 -0.73
- - - 2.58 - 3.22 - -0.46 - - - - - - - -
- 0.43 2.05 - - 2.02 - - - 2.7 - - - - - -
-0.03 -2.77 0.34 0.4 -0.12 1.3 -1.34 0.39 0.32 0.71 - - 1.25 -1.42 0.66 -
- - 2.92 0.95 0.71 - - - 1.23 - 1.33 - - - - -
- - - -4.1 - - - - -4.85 - -4.76 - 2.98 2.02 1.11 0.82
- - - 1.44 0.92 -0.25 - - - - 1.03 0.34 - -0.39 2.7 -
-3.59 -3.89 -0.0 0.63 0.55 0.85 -0.19 0.77 -0.51 0.38 -0.25 -0.84 0.93 -0.87 -0.59 -0.07
- - - - - - - - - - - - - - - 4.0
- - - - - - - 0.75 1.66 0.72 0.75 - - - 2.97 -
- - - 2.4 - 3.03 1.35 - - - - - - - - -
-4.93 -2.36 -2.1 -2.76 -1.65 -0.67 - - - - - - 1.72 2.11 1.37 2.08
-1.72 - - -0.53 - 1.43 - -2.54 - - - - - - 3.6 -
- - 0.98 1.31 -0.47 2.95 - - - - - 0.96 - 0.22 - -
1.82 - - 2.02 - 1.66 - - 1.28 - - - - 1.49 - -
-1.52 -1.68 -0.43 -0.1 -0.77 -0.38 -1.74 -1.93 -3.17 -2.01 -3.26 -2.55 1.57 1.41 1.16 1.7
- - 1.47 -0.52 - - -1.52 - - - - - 1.06 - 3.03 0.94
- - 1.21 1.15 0.9 - - -1.19 -0.16 - - - 2.1 1.01 - 0.98
- - 0.64 - - - - - - - - - 1.55 - 3.53 -
- - - - 0.88 0.75 3.41 0.88 - - - - - - - -
-1.12 - 1.67 -0.03 0.95 1.5 -0.7 0.62 -0.95 - - -0.22 - 0.05 - 1.03
-1.34 -0.27 -0.18 1.07 0.52 1.32 -4.62 0.49 -0.12 1.0 -0.89 -0.7 -0.89 -0.61 -2.05 -0.15
- - 0.8 3.22 1.74 - 0.71 - - - - - - - - -
-2.99 - -0.09 -0.26 0.75 0.64 -1.53 -6.82 - - 0.08 0.47 0.9 1.64 1.03 0.06
- - 0.7 2.47 0.61 1.94 - - - - -0.45 0.03 - - 0.78 -
- - 0.52 - - - - - - - - - 1.43 0.39 3.4 -
-0.13 - -0.24 1.42 0.46 2.54 - - - - - 0.35 - - 1.64 -
- - 3.62 - - 1.9 - - - - - - - - - -
- 0.64 - -0.06 - -0.43 - 0.54 - - - - - - 3.5 -
- - 2.19 3.52 - - - - - - - - - - - -
- - 4.0 - - - - - - - - - - - - -
-1.46 - 1.19 1.23 -2.14 0.5 1.92 0.01 -1.7 - -0.02 -0.71 -0.36 -1.45 0.62 -
- - 3.14 2.85 - - - - - - - - - - - -
- - 0.5 2.05 0.81 2.38 0.17 - - - - -0.05 - - 0.48 -
- 0.93 0.47 2.26 1.6 0.76 - - - - - - - -0.71 1.36 -
0.41 2.24 - - - 1.16 - 1.05 - - - - - - 2.5 -
- - - 4.0 - - - - - - - - - - - -
0.5 0.5 1.29 1.14 1.17 1.43 -0.76 -0.63 -2.93 -2.88 -3.82 - -0.32 -0.74 -1.67 -1.77
- - -1.72 1.5 2.56 0.4 -0.04 -6.06 -2.85 -2.47 1.33 0.87 - - - -
- - 0.16 - 0.84 0.97 -1.54 0.5 - - - - 2.05 1.27 - 1.51
- - - - 2.8 2.33 - - - 2.01 - - - - - -
- - 0.39 2.19 2.11 1.68 -0.69 - - - -0.93 0.55 - - - -
-2.27 -1.06 -1.28 1.39 1.41 2.8 -1.96 -2.0 - - - -0.66 0.61 - - -
-0.77 0.95 1.75 1.41 1.68 0.3 0.88 -0.22 - - - -1.67 - - - -
-2.95 0.44 1.13 -0.11 -1.92 -0.47 0.87 0.26 -0.42 -1.37 0.25 0.15 -0.14 -1.23 0.84 -0.26
- 0.42 2.3 1.47 1.56 - - - - - - - - - 2.0 -
- - - 3.82 - 0.87 - - - - - - - - - -
- - 2.97 1.3 - 2.52 - - - - - - - - - -
-1.13 - -1.32 - - - -2.57 -2.56 - - - - 2.33 2.1 -0.02 2.18
- - 2.27 1.68 0.88 0.92 -1.11 -2.9 -0.57 -0.06 0.24 -1.65 - -1.02 - -
- - -2.42 -2.07 - - - -5.13 - - - - 1.8 1.84 1.45 2.52
- - - 3.29 0.76 2.18 - - - - - - - - - -
-2.54 - - 1.4 1.72 1.4 0.59 -1.81 -1.16 - 0.93 -0.17 - - 1.15 -
-1.07 -2.2 -0.02 -2.07 -1.48 -3.44 - -3.62 - - -1.73 -0.51 1.67 -0.79 2.93 0.18
-0.71 -2.37 -0.92 -0.19 -0.45 -1.43 - - -1.66 - - -1.7 1.55 0.14 1.98 2.03
-1.73 - 1.22 -0.04 1.77 1.71 - - - - - 0.93 - - 1.94 -
- - 1.76 2.51 0.54 1.4 - 0.2 -1.76 -2.28 - - -1.0 -2.1 - -1.12
- - - - - 2.32 0.68 - - - - - - - 3.23 -
- - -4.93 -2.55 -3.86 -3.32 - - - - - - 0.53 1.52 3.17 1.21
-0.03 -0.02 - 2.09 -1.12 -1.31 - - - - - - 1.04 -0.06 2.01 0.91
0.9 - 0.11 1.85 -1.35 1.66 1.31 - 0.09 0.15 - - - - - 0.31
- - - - - 4.0 - - - - - - - - - -
- - 0.84 1.83 0.42 3.03 -1.18 - - - -2.75 -0.87 - - - -
- 2.08 1.04 2.38 2.17 - - - - - - - - - - -
- - 2.59 2.19 -1.61 1.56 -1.41 - - - - 0.84 - - - -
-2.65 -3.99 0.94 0.2 -0.73 -1.49 -0.95 -3.78 -1.29 -0.82 - - - -0.63 3.25 -
- - - - - - - - - - - - 3.33 1.01 - 1.98
- - 3.03 - - 2.97 - - - - - - - - - -
- - 0.97 0.3 - 1.94 - - - - - - - - 3.17 -
- - - -0.53 -0.73 -0.9 - - - - - - 2.05 - 3.02 0.93
-0.19 - -0.34 1.0 -0.21 - - 1.58 0.25 - - - - - 2.87 -
- 3.46 - - - - - - - - - - - 2.31 - -
- - 0.08 1.58 1.37 2.13 - 0.66 - - - - -0.02 -1.11 0.96 -
- - 4.0 - - - - - - - - - - - - -
- 0.65 1.33 0.84 1.4 - - 0.07 - -0.44 - - - -0.26 - 2.28
- - 4.0 - - - - - - - - - - - - -
- - 0.9 0.65 -1.55 1.98 -2.35 0.28 -0.54 - -0.44 - 0.82 -1.84 1.22 0.11
-4.71 -4.54 -0.98 -0.59 -0.66 0.06 -0.46 -0.67 -2.79 - - -2.8 2.05 1.2 1.15 1.47
- - - 2.8 -0.56 1.27 - - - - 2.04 0.86 - - - -
- - - - - 4.0 - - - - - - - - - -
- -4.17 -1.91 -3.15 -0.57 0.07 -2.58 - - - - -2.9 2.11 1.84 1.38 1.61
- - 3.61 - 1.93 - - - - - - - - - - -
- -2.95 1.03 1.42 1.56 2.68 -0.72 - -1.79 -1.73 -0.7 - - - - -
0.81 - -1.28 2.29 - 0.62 -0.35 -2.41 -0.21 0.81 0.76 - - - - 1.1
- - 0.9 1.23 0.82 2.06 -2.57 0.31 - - - - - -1.08 1.99 -
- -0.72 1.68 1.21 0.58 0.42 - -0.47 - - 0.55 -0.56 - -0.32 1.76 -
- - - 3.08 1.68 2.12 - - - - - - - - - -
- - 1.43 1.44 0.83 -0.93 1.25 - - - - - - 0.93 2.0 -
- - 3.02 - - 2.98 - - - - - - - - - -
- - 2.87 2.47 1.67 - - - - - - - - - - -
- - 0.85 2.2 0.96 2.83 - -0.85 - - - - - - - -
-1.02 -1.41 1.57 0.76 - 2.56 - - - - - 0.02 - - 1.27 0.17
- - - -0.99 1.41 1.65 0.41 -0.27 - - -0.88 - 0.59 - - 2.46
- - - 3.52 - 2.17 - - - - - - - - - -
- 1.5 3.39 1.41 - - - - - - - - - - - -
-1.14 - - -1.39 -1.63 -1.75 - - - - - - 2.74 1.87 1.13 1.03
1.43 0.34 1.0 2.34 0.7 -0.03 - - -0.4 - 0.69 - - - - -
- - - - - -5.94 - - - - - - 2.06 2.74 1.99 0.21
- - - - - 0.38 - - - - - - - - 3.88 -
- - 1.64 2.65 1.12 2.0 -3.52 - -4.81 - -2.33 -3.28 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.