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Heatmap: Cluster_81 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
1.68 -0.34 -1.52 -2.73 -0.96 -1.97 -1.98 2.31 -0.48 -1.13 -1.45 -2.14 0.15 0.08 -1.31 0.27
-4.96 - - - - - -7.4 -4.38 - - -9.08 -9.18 2.67 2.05 -0.47 2.23
1.35 - - - - - - 1.8 - - - 0.27 -0.39 2.1 1.59 -0.51
-0.64 -0.88 - - - -2.66 -0.71 1.72 - - -1.95 -2.05 -0.71 1.19 0.26 2.62
0.2 -2.54 -0.82 -1.42 -2.64 - -2.7 1.4 -4.74 -4.68 -4.64 -1.58 1.77 1.53 -0.46 1.72
1.57 1.37 - - - -5.49 -1.88 3.22 -3.89 -4.82 - -3.31 - -1.18 - -2.66
2.1 -0.67 - - - -5.4 - 3.19 -0.71 0.35 - -4.81 - - - -
2.25 -4.6 - -5.26 -3.89 -3.82 - 3.42 - - - - - - -1.72 -
1.74 0.83 -1.86 -2.42 -0.55 -0.4 -2.08 2.72 -0.56 -1.51 -2.84 -1.89 -2.64 -1.99 -3.36 -2.46
-1.16 -5.19 - -5.83 -2.96 -6.2 - -0.34 - -6.52 - - 2.57 -1.55 - 3.05
1.16 -0.05 -4.18 -3.85 -4.05 -2.63 -2.53 2.91 -3.61 - - - 0.05 1.22 - 0.41
-2.22 -4.16 -10.2 - - -10.22 - -1.55 - - - - 2.26 1.67 1.33 2.3
0.29 - - - - - - 2.47 - - - - 0.72 0.63 - 2.6
0.75 - - - - - - 1.79 - - - - 1.57 1.18 0.4 2.11
-1.09 - -2.72 - - - -3.71 -0.52 - - - -2.45 2.65 1.47 -1.16 2.3
1.9 - - - - - - 3.62 - - - - - - - -
-0.26 -5.27 -3.44 -3.11 -3.9 -3.36 -2.12 0.47 -3.13 -3.81 -3.55 -2.0 2.01 1.89 0.44 1.82
-1.7 - - - - - - -0.77 - - - - 2.11 1.3 -3.34 3.04
0.67 -3.72 -8.51 -8.18 -6.57 -5.97 -2.22 1.89 - -8.89 -7.27 -4.64 1.43 1.24 0.35 2.0
-0.98 -6.34 -4.46 -5.03 -5.33 -4.66 -3.02 -0.11 -8.7 -8.64 -5.8 -4.71 1.95 1.92 1.63 1.79
-3.26 -4.98 -8.36 - -5.65 -6.4 -8.03 -2.14 -4.48 -6.74 - - 2.44 2.56 0.99 1.17
0.32 -5.07 -1.66 -2.09 -1.55 -1.58 -1.12 2.76 -3.55 -2.72 -1.33 -0.77 0.4 0.48 -0.46 0.65
-1.28 -6.26 -6.72 - -4.26 -4.43 -3.22 -0.06 -3.06 -3.39 -2.66 -2.99 2.26 1.86 1.48 1.44
-0.78 -5.17 - - - - - 0.03 - - - - 1.44 1.34 2.38 1.97
-1.83 -5.02 - - -8.32 - -8.12 -0.54 - -9.81 - -9.88 1.67 2.06 1.85 2.01
0.56 -1.47 -2.83 -6.08 -4.71 -3.13 -7.09 2.42 - -5.78 -2.74 -4.27 1.08 -0.85 -2.53 2.44
0.09 -4.26 -1.43 -0.97 - -3.79 -3.1 1.89 -1.19 -3.13 -0.78 -2.2 1.41 0.71 0.46 1.62
0.82 -4.45 -4.51 - - -5.55 -2.37 1.46 -2.62 -1.07 -3.85 -2.95 2.02 1.26 -1.62 1.84
1.28 - - - - - - 1.99 - - - - - 3.26 - -
1.16 -7.23 -3.17 -4.19 -3.65 -1.85 -0.26 2.48 - -7.06 -3.32 -1.48 0.84 1.31 -0.28 0.35
-1.73 -4.17 -5.07 -4.96 -3.63 -2.91 -3.34 0.26 -4.07 -4.64 -3.22 -4.33 2.0 2.43 1.11 1.17
1.59 0.9 -4.21 - - -4.82 -4.66 2.8 -3.2 -2.97 -6.11 -6.21 -0.57 -0.59 -2.33 1.16
0.58 -1.58 -0.8 -0.89 -1.5 -3.04 -1.35 2.04 -1.49 -0.96 -2.54 -2.07 0.59 1.2 0.96 0.04
1.47 -0.72 - - - - - 2.54 - -6.59 - -6.66 1.21 1.63 -1.53 0.05
0.75 -1.15 -6.87 - -4.41 -5.32 -3.45 1.38 - - -4.22 -1.62 1.35 0.64 1.38 2.0
1.63 - - - - - -4.77 3.39 - - - - -2.18 -0.47 -1.21 0.01
-1.98 -3.94 -3.79 -3.86 -6.58 -5.76 -4.89 -0.54 -8.15 -5.77 -5.74 -4.21 2.28 1.53 0.79 2.39
-0.73 -4.98 - -7.51 -4.91 - -1.95 0.6 -4.94 -5.62 -3.84 -3.95 2.14 1.54 -0.21 2.38
1.19 -0.21 -1.24 -2.06 -4.38 -4.54 -2.6 2.84 -3.93 - 0.87 0.31 -2.18 -2.7 0.11 -2.31
1.1 -1.79 -0.94 -1.38 -0.7 -1.01 -0.51 1.73 -1.09 -0.98 -1.37 -1.91 0.87 0.5 -0.45 0.96
-1.56 -5.73 -7.78 - -6.07 -8.82 -5.75 -1.19 -5.04 -4.83 -6.12 -5.64 2.48 2.26 1.1 1.36
0.36 -6.5 - - -3.76 -4.03 - 1.8 - - - -4.89 0.7 1.71 1.77 1.45
0.77 -5.04 -8.96 - - -10.0 -7.46 1.81 - - - -9.41 1.71 1.6 0.18 1.72
2.08 - -5.37 -3.46 - -4.41 -6.04 3.41 -4.8 -2.74 - -4.81 -3.46 -2.23 -2.48 -2.0
0.92 - - - - - -0.51 2.7 - -0.19 - - 1.09 0.99 - 0.95
-2.85 - - - - - -7.3 -2.56 - - - - 2.55 2.4 0.7 1.53
2.46 - - - - - - 3.39 - - - - - - - -
1.07 - - - - - -4.36 2.21 - -2.98 - - -0.77 2.94 - -0.31
2.15 -5.51 - - - - -6.99 2.86 - - - -7.35 -0.7 -3.44 -5.01 1.82
-1.94 -2.98 -4.59 -5.85 -4.33 -5.87 -3.77 -0.7 -8.08 -9.02 -6.99 -4.63 2.52 1.51 0.23 2.31
-2.67 - - - - - - -2.17 - - - - 2.34 -0.85 -2.98 3.3
0.25 -1.05 -2.77 -3.23 -3.12 -5.49 -1.18 1.37 -1.22 -1.79 -5.27 -1.34 -0.5 2.48 0.6 0.98
-0.0 - - - - - - 1.14 - - - - - - 3.68 -
-1.8 - -5.52 -6.31 -5.42 -4.53 -5.14 -1.13 - - -10.95 -7.3 2.15 2.23 1.45 1.7
0.48 -0.29 -6.07 -7.96 -6.43 -8.91 -5.85 2.83 -5.22 -2.46 -3.04 -1.83 1.26 1.28 -1.41 -0.24
-0.45 -2.81 -2.12 -2.56 -4.01 -5.91 -8.86 0.43 -3.98 -4.04 - -3.31 1.31 0.48 2.66 1.52
0.47 -4.31 - - -5.98 -3.69 -4.19 1.47 -3.74 -4.9 -5.45 -2.31 1.57 1.53 0.99 1.79
0.15 -4.35 -1.97 -3.7 -3.23 -3.07 -1.23 1.17 - - -4.68 -2.62 1.43 0.74 -1.89 2.76
2.14 0.98 - - -0.95 - - 2.94 - -0.46 - -0.53 - - - -
1.45 -6.62 - - - - -5.2 3.61 - - -6.46 - -2.21 -2.04 -2.22 -1.74
2.2 -0.01 - -4.65 -2.04 -3.44 -0.13 2.99 -0.96 - -1.51 -1.62 - - - -
1.59 0.36 -4.56 -5.82 -3.43 - -5.82 2.87 -2.0 -1.35 -3.49 -4.59 0.35 0.37 -2.26 -0.55
1.7 0.04 -2.44 -1.83 -0.55 -2.36 -3.78 2.87 0.43 0.46 -3.48 -3.41 - -6.22 -3.56 -
-5.3 - - - -8.68 -8.85 - -4.52 - - - - 2.0 1.92 2.3 1.68
0.18 -0.11 -4.63 -3.52 -4.31 -3.3 -3.35 2.15 -2.4 -3.63 -3.45 -3.17 1.18 1.49 0.31 1.23
2.01 1.22 - - - - - 3.27 - - - - - - - -
-1.2 -7.17 -10.11 - -9.98 -10.15 -5.78 0.13 -2.12 -2.11 - -9.56 2.35 1.78 0.85 1.86
-0.57 - -8.11 - -7.98 -8.14 -8.78 0.56 - - - - 1.9 2.23 0.71 1.91
0.52 -0.62 -6.91 -10.04 -5.59 -6.51 -5.11 3.24 -0.7 -0.67 -8.72 -8.82 -0.48 0.64 -1.05 -1.37
-1.74 -5.83 -5.43 -7.06 -9.0 -6.23 -5.43 -1.09 -10.15 - -7.73 -6.35 2.08 2.26 1.46 1.75
1.82 - -0.17 - - - - 3.33 - - -2.09 -2.19 - - 0.14 -
-0.35 - - - - - - 0.38 - - - - 2.19 2.49 0.17 1.39
1.52 -1.24 -1.67 - - - - 2.81 -1.09 -1.03 - - - 1.73 - 0.12
-1.35 -4.34 -5.15 - -3.28 -3.32 -2.95 1.38 -4.59 -5.53 -3.91 -4.01 1.91 1.98 0.04 1.87
0.71 -3.74 -4.21 -4.46 - - - 2.83 - - - - 0.41 1.05 0.62 1.11
-1.87 -4.42 -4.07 -6.55 -6.75 -3.67 -3.03 0.11 - - -7.22 -3.42 2.09 2.2 0.89 1.82
-1.11 - -4.93 -5.92 -6.38 -4.72 -3.16 0.48 - - -6.18 -5.11 2.26 1.93 0.21 2.05
-1.45 - - - - - -5.43 -0.48 - - - - 2.42 1.78 -1.73 2.53
1.51 - - - -0.72 -3.7 -2.75 3.05 0.23 -2.03 - - - -1.26 - 1.13
-0.67 -4.98 - - - - -8.1 1.08 -4.86 -5.21 -5.18 - 2.06 1.65 1.36 1.7
1.41 -7.94 -1.63 -2.28 -2.98 -1.18 -0.71 2.1 - - -5.57 -1.76 -0.04 -0.97 -2.07 2.41

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.