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Heatmap: Cluster_222 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-6.46 -1.8 -0.27 0.79 0.81 1.59 2.6 -0.02 -0.85 -3.46 -2.89 -1.49 -5.34 -4.85 -4.37 -3.47
- 1.08 -0.75 0.4 0.51 1.46 2.36 0.08 - - 0.28 -1.41 - - - -
- - - - - 0.58 1.51 -1.08 - - - - - - 3.48 -
-0.32 -1.95 -0.53 0.12 0.3 0.42 1.3 -0.42 -0.93 -0.72 0.52 0.21 -0.37 -0.55 -0.54 0.59
-2.45 -3.58 0.3 1.3 0.16 1.49 2.13 -3.44 -1.07 -2.35 0.63 0.43 -5.38 -4.06 - -
-0.42 0.95 -0.59 -0.17 -0.7 1.26 1.91 0.32 -1.94 -1.34 -0.23 -0.08 -2.1 -1.14 -1.12 -2.71
-11.13 -5.07 0.08 1.54 0.15 2.17 1.88 -1.71 -0.48 -1.73 -1.01 -0.17 -8.44 - -5.88 -8.56
-0.25 -2.58 -0.46 0.63 0.38 0.51 2.01 -1.14 -3.85 -5.11 0.72 -1.72 0.47 -0.59 -2.25 0.27
- - -4.22 -1.07 -2.5 2.58 2.02 -1.52 - - 0.7 1.71 - - - -
- - - - - 3.07 2.92 - - - - - - - - -
- -8.15 0.33 0.93 0.37 1.43 2.61 -5.41 -2.44 -2.73 0.03 0.4 - -5.74 - -4.77
- - 0.86 - 1.36 2.45 2.36 - - - -0.0 - - - - -
-5.81 - 0.67 0.84 1.27 1.15 2.9 -3.97 -6.06 - -2.97 -2.07 - - -3.73 -
- -5.48 -4.92 -0.58 1.07 1.65 2.44 -1.23 - - -0.16 0.29 -0.42 -0.19 - -1.13
- 0.41 - 2.17 0.52 - 2.14 0.44 - - - 0.43 0.72 - - -
-3.81 - -0.99 -2.66 -1.28 -0.7 0.24 -3.07 - - -2.32 -2.42 1.24 2.41 0.89 1.6
-3.5 - -0.4 -0.59 -1.93 2.05 2.28 -1.05 - - -1.41 -0.53 -0.05 1.44 - -
- - - - - 1.91 2.54 -1.02 - - 1.87 1.18 - - - -
- - 0.76 0.88 1.17 1.38 2.84 -4.96 - - -2.95 -1.74 - - - -
0.3 - 0.29 1.12 0.92 1.75 1.91 -2.37 -2.8 -0.74 -0.34 -0.68 - - - -
- -2.24 -1.84 -3.76 0.47 2.37 2.56 -0.55 - - -0.18 -0.32 -2.18 -2.95 -2.2 -4.3
-5.89 - - - -4.94 -4.69 -3.87 -9.32 - - - - 2.25 2.21 1.81 1.56
0.02 -0.26 -0.4 -0.09 -0.12 0.38 0.51 -0.26 -0.23 -0.17 0.02 -0.17 -0.04 0.08 0.21 0.19
-1.81 -1.27 -1.03 -1.86 -0.39 1.01 1.28 -1.06 -0.83 -0.28 0.09 0.57 0.31 0.28 0.04 0.5
-1.17 -1.05 -0.1 0.7 0.13 1.05 1.23 -0.92 -1.48 -1.1 0.5 0.3 0.0 -0.51 -1.31 -0.16
- - -0.69 1.24 - -0.13 2.02 0.45 -1.07 - 0.02 -0.08 - 0.11 - 1.66
-8.44 -2.91 0.45 0.63 0.4 1.18 2.47 -0.97 -2.77 -1.75 0.63 0.39 - - - -
0.69 -0.89 -0.44 0.32 0.87 0.45 1.93 -1.02 -0.76 -1.19 0.31 -0.64 -0.92 -1.79 -2.0 -1.44
- - 1.37 -0.21 0.76 2.07 2.27 -2.49 - - -2.14 0.52 - - - -
- - - - - 2.82 3.16 - - - - - - - - -
-3.59 -3.94 0.53 1.06 0.44 1.82 2.76 -4.19 -1.73 -2.67 -3.64 -3.74 - - - -
- 0.95 - - - 2.83 2.8 - - - - - - - - -
-2.99 -6.12 0.41 0.84 -0.35 1.04 2.16 -0.88 -2.88 -1.13 1.34 0.58 - -3.18 -2.72 -
-5.41 0.13 0.33 0.75 0.53 1.38 1.58 -2.16 -1.54 0.11 0.88 0.25 - -5.38 -2.31 -
-11.13 -10.6 -0.08 -0.44 -0.88 1.79 2.82 0.48 -4.8 -4.43 -0.03 -0.35 - -11.37 - -
- - 0.81 1.59 -1.41 2.37 2.46 -5.09 - - -2.98 -4.67 - - - -
- -5.99 -0.48 0.56 1.83 1.04 2.96 -4.31 -5.32 - -2.41 -3.0 - - - -
- - - - - -0.03 -2.26 -4.25 - - - -1.0 2.33 1.23 - 2.79
- - - - -0.12 1.88 2.16 -0.59 - - -0.59 1.31 - - 1.63 -
- - 0.29 1.21 0.11 2.02 2.12 -2.95 -5.53 -4.25 0.36 0.47 - - -3.23 -
- - -2.12 -0.2 0.58 0.66 1.2 - -0.52 - - - 0.78 - - 2.83
-3.48 - -3.86 -3.94 -3.03 -1.37 -0.59 -2.19 - - - -5.3 2.42 2.36 -0.97 1.75
- - -0.68 -0.93 0.45 0.02 2.07 - - - - - 1.25 0.24 - 2.24
- - 0.39 1.0 1.32 1.65 2.59 -4.27 - - -2.17 -0.4 - - - -
-6.15 -5.9 0.19 1.53 0.68 1.86 2.48 -3.84 -4.79 -3.15 -1.89 -0.63 - - - -
- -0.22 -0.96 - 0.17 -0.4 2.28 -3.62 - - - -0.39 -0.05 1.18 1.93 -
-3.18 - -1.17 -0.33 0.76 2.13 2.57 -1.27 - - -2.32 -3.42 -1.98 -1.11 -1.05 -0.47
0.4 - - - - 1.54 2.48 - -0.16 - - -0.17 - - 2.13 -
0.74 -1.9 0.41 -2.83 1.26 0.13 2.29 -0.59 -0.97 -1.5 -2.46 - -1.28 -0.79 - 0.6
-0.48 -0.1 -0.49 -0.32 -0.22 0.18 0.59 -0.3 -0.93 -0.79 -0.56 -1.21 0.69 0.54 0.22 1.06
- - 0.1 1.21 0.54 0.69 2.59 -0.36 - - -0.21 0.9 - - - -
-1.13 -5.58 -0.24 0.21 -0.3 0.72 1.82 -0.72 -2.5 -2.44 0.18 0.64 0.64 -0.15 -2.17 0.25
-0.49 -0.24 -1.02 0.89 1.84 1.11 2.3 -0.87 - - - - - -0.21 - -
- - -0.57 0.15 0.77 2.51 2.38 -4.93 - - -1.43 0.11 - -3.27 - -
- - - - - 3.03 2.97 - - - - - - - - -
- - 0.07 1.08 0.87 1.59 2.86 -3.33 - - - -0.68 - - - -
- - - 1.79 1.58 0.42 2.59 - - - 1.14 - - - - -
- - -2.42 1.62 0.95 0.87 2.87 -6.09 - - -1.15 -0.84 - -1.61 - -1.64
-6.3 - -1.74 -1.25 -1.04 2.28 2.56 -1.6 -2.91 -2.85 0.49 0.9 -2.99 - - -4.7
-5.95 - -1.74 -1.48 -0.22 -0.63 0.73 -3.6 -7.17 - -3.49 -3.18 1.48 1.93 1.93 0.55
-1.13 - - - - -1.78 0.37 - - - - - 1.72 2.21 - 2.6
-2.04 -3.11 -0.98 -0.42 -3.43 0.92 1.41 -0.6 - - - -0.42 1.52 1.25 1.32 -0.78
-2.15 -1.64 -0.88 0.74 0.15 0.53 1.4 -0.81 - - -0.21 0.05 -1.77 0.13 1.21 0.91
-4.15 - 0.83 0.25 1.77 1.53 2.48 -3.04 - - -1.56 -0.66 - - - -
- - 1.17 1.61 0.43 1.8 2.38 -4.26 - -3.98 -1.95 -1.73 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.