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Heatmap: Cluster_243 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-2.04 - 0.93 - 2.5 0.5 0.83 0.54 - - - - 1.83 - - -
- - 0.8 - 2.23 1.02 1.71 1.52 - - -0.07 -1.18 - - - -
-2.19 - 1.01 0.35 0.94 1.23 0.55 0.96 - - - -2.43 1.73 - - 0.39
- -2.06 -2.52 1.27 2.42 1.35 1.46 -2.17 - - - 0.04 -0.6 - - -0.73
- - -2.38 -1.79 -1.51 -2.0 -2.88 -2.79 - - -2.29 -3.4 0.28 2.52 2.24 1.41
-0.49 -0.94 0.69 0.03 1.95 1.51 -0.14 -0.31 -0.45 0.34 -0.95 0.27 - - - -
-0.02 -0.52 0.06 0.02 0.06 -0.28 0.39 -1.14 -0.89 -0.58 0.34 -0.1 0.62 0.27 0.06 0.51
- - 0.75 -0.08 0.91 0.43 0.62 0.47 -0.45 -0.73 -0.08 -1.87 0.22 -0.54 -2.21 1.38
-0.84 -3.96 -1.4 -2.06 0.71 0.6 0.56 -0.14 - - - -1.09 0.74 1.56 0.23 1.56
-2.04 -9.18 -0.65 -1.61 1.83 -0.69 1.37 0.69 -1.44 -1.34 0.21 0.28 -1.39 -0.77 0.95 -1.46
-3.29 -4.05 0.84 -0.29 1.49 1.56 1.31 0.88 - - -1.76 0.88 -1.32 -3.22 - -1.0
- - -1.58 -0.43 0.57 -0.28 0.96 -0.07 - - - - 1.23 1.32 0.89 1.6
-3.7 -4.38 -6.18 - -0.03 -1.48 -0.81 -0.92 -6.21 -5.51 - - 2.17 1.15 1.3 2.07
-0.36 -2.11 -1.29 -1.74 1.82 1.3 1.7 0.23 -2.4 -4.15 -2.94 -3.41 0.01 0.31 -0.98 -0.64
-4.21 -2.91 -0.14 -0.16 0.81 0.26 0.4 0.55 -6.68 -6.62 -6.59 - 1.38 0.79 0.23 1.45
-4.33 - -1.98 - -1.11 -1.02 -3.23 -0.85 - - -2.9 -1.01 2.26 1.72 0.33 2.04
-0.46 -4.29 -0.58 -0.46 0.38 0.45 0.67 0.17 -1.8 -2.74 -1.71 -1.23 1.73 0.81 -1.24 0.84
- - -3.19 - 1.99 1.73 1.31 -0.28 - - - - 1.05 -1.37 1.29 -1.39
-0.94 -3.2 - - 1.74 1.87 1.52 -1.91 -3.08 -2.6 -1.25 -1.35 -0.15 -0.96 0.24 0.64
-0.59 -0.34 -0.12 0.39 0.46 0.33 0.54 0.31 -0.61 -0.56 -0.12 -0.13 0.02 -0.56 -0.3 0.39
-0.25 -1.43 -0.6 -0.29 0.31 -0.31 -0.24 -0.23 -1.14 -1.51 -0.81 -0.92 1.16 0.89 0.23 1.26
-1.69 -0.95 0.47 -1.9 1.54 0.63 1.55 -0.27 -1.08 -2.61 1.01 0.32 0.27 -2.42 - -
-2.57 -1.65 -0.74 -0.54 0.58 -0.58 0.69 0.01 -0.58 -0.31 -0.11 0.02 0.5 0.37 0.08 1.18
-0.22 -2.74 -0.19 -0.04 0.33 0.17 0.3 0.7 -0.99 -1.02 -0.28 -0.88 0.82 -0.07 0.01 0.85
- - 1.15 - 2.28 1.12 0.84 1.07 - - - 1.51 - - - -
-3.42 - -2.61 -3.19 -1.92 -2.1 -2.53 -1.55 - - -7.8 -5.32 2.03 2.28 1.83 1.06
-4.2 -6.29 -4.09 - -1.96 -2.7 - -3.1 - - -3.99 -3.09 1.48 0.81 2.88 1.7
-4.2 -1.74 1.32 0.02 1.59 1.34 0.19 -0.13 0.53 0.03 -0.02 -0.1 -4.35 -6.27 -7.9 -3.35
-1.01 -0.97 -0.03 0.4 0.19 -0.2 0.6 -0.97 -4.69 - 0.45 -0.06 1.7 0.15 -1.81 0.72
0.81 - -0.87 -1.76 1.73 1.42 1.5 1.23 -3.1 -2.3 -1.78 0.39 -3.35 -4.44 - -2.42
-0.48 -1.17 -1.08 -0.46 0.25 0.28 0.94 0.6 - - - - 1.12 1.09 -0.26 1.41
-0.38 -0.96 -0.76 0.34 0.79 -0.33 -1.53 -0.45 -5.2 -5.01 -2.62 -1.12 0.88 0.87 1.33 1.27
-1.55 -6.21 -0.66 -4.33 -0.29 -0.65 -1.09 -0.13 - - - -4.1 2.16 1.2 0.03 2.1
- -0.49 0.41 -0.02 1.76 0.8 1.15 1.45 - - -0.89 -1.58 0.32 - - -0.39
-4.47 -5.24 0.13 -0.66 1.15 1.64 1.34 1.17 -2.79 - -3.18 0.41 -0.2 -2.3 -2.73 0.34
-0.66 -1.9 -2.58 -3.36 0.16 -0.61 0.02 -0.07 -2.91 -2.51 -4.4 -2.24 1.22 1.76 1.17 1.36
- - -1.39 -1.43 0.78 -0.05 0.52 -0.41 -2.78 - -1.67 -3.79 2.19 0.72 0.05 1.37
-0.7 -2.9 -2.43 -4.55 0.85 0.8 1.19 0.86 -2.49 -2.92 -4.21 -2.99 1.02 0.76 0.17 1.03
-0.28 -6.98 1.02 0.15 0.1 1.63 0.72 1.55 -0.32 -1.64 -1.08 -1.06 -2.24 -0.92 -1.85 -2.41
-4.37 -3.7 -0.16 -0.75 0.81 0.84 0.4 0.15 -3.27 -3.54 -1.59 0.15 1.11 0.49 - 1.69
-3.19 0.14 0.45 0.38 0.94 0.45 0.99 -0.03 -0.52 -0.67 -0.98 -0.39 -0.87 -0.52 0.34 -0.38
-2.7 -0.63 - -4.87 1.03 0.32 0.47 -0.94 - - - - 1.35 1.09 0.49 1.96
-0.12 -0.93 -4.02 - 1.57 1.08 1.75 0.25 - - - - 0.11 -0.4 0.08 0.97
-3.23 - -0.81 -0.47 2.64 1.43 1.33 -0.13 - - -2.71 0.35 - -1.0 - -1.61
-3.25 -3.81 -3.26 -3.35 -1.55 -2.84 -2.85 -3.63 - -5.63 - -3.7 2.23 2.27 1.08 1.67
0.14 0.39 0.51 -1.53 2.22 0.67 0.89 0.36 -1.72 -1.81 -0.72 -0.11 -4.99 -4.5 -4.02 -2.66
-10.91 -7.95 1.17 0.76 1.63 1.38 1.01 1.94 -1.87 -5.05 -4.28 -2.91 -9.24 -10.34 -5.94 -
-0.75 -1.55 -0.18 -0.21 0.36 -0.78 0.53 0.11 -0.08 0.3 0.6 0.12 0.29 0.09 -0.52 0.2
-6.04 -1.19 1.31 0.88 0.75 1.51 -0.12 1.68 -1.1 -0.15 -0.95 -0.61 - -5.34 -6.97 -7.07
-1.53 -1.91 -0.88 -1.4 -0.22 -0.76 -0.3 -0.63 -2.37 -1.92 -1.8 -1.03 1.53 1.55 1.3 1.04
-1.91 -1.1 -0.61 -0.45 1.27 0.57 0.32 -0.57 -3.0 -2.83 -1.59 -1.11 -0.23 0.61 1.76 0.29
- - -0.88 -0.41 0.3 -0.3 0.27 -0.09 -1.87 -2.92 -0.82 -2.2 1.69 0.54 0.63 1.63
-3.12 -3.28 -1.27 -0.87 0.74 0.12 -0.03 -0.61 - -7.41 -3.47 -2.48 0.9 1.18 2.01 1.0
- - - - 1.47 0.31 2.67 - - - - 2.49 - - - -
-4.63 -5.49 -3.04 -4.65 -1.98 -1.68 -2.03 -1.63 - - - -2.84 2.69 2.28 -0.51 1.33
-2.87 - 0.26 -0.72 1.62 1.41 1.3 1.39 - - -2.97 0.1 -0.15 - -0.76 -0.86
-1.02 -1.39 -1.23 -1.56 -0.03 -0.76 -0.3 -0.11 -5.9 -5.84 -3.22 -2.59 1.56 1.44 0.87 1.7
- - -3.2 -2.53 0.34 -0.11 -0.15 -0.67 - - - - 2.46 1.27 -0.33 1.72
-0.97 -0.41 -0.3 -0.1 0.33 -0.93 0.59 -0.01 0.05 0.3 0.4 0.42 -0.13 0.05 -0.79 0.33
-0.75 -0.52 -0.36 0.2 0.69 0.47 0.66 -0.63 -1.2 -1.59 0.07 -0.24 0.62 0.2 0.0 0.26
-2.94 -3.11 -0.68 -1.02 -0.09 0.03 -0.36 0.33 -2.72 -2.24 -1.84 -1.85 1.92 1.27 -4.57 1.8
-2.25 -6.03 -2.07 -2.31 -0.05 -1.9 -0.26 -0.88 -3.3 -1.58 -1.1 -1.07 1.75 1.31 0.96 1.83
-0.86 -0.24 -0.01 0.17 0.87 -0.23 0.63 0.13 0.32 -0.41 0.09 -0.02 -0.03 -0.89 -1.48 0.3
-0.63 -1.06 -0.76 -0.53 1.3 -0.75 0.89 -0.18 -0.72 0.2 0.93 0.5 -0.51 -0.45 -0.95 -0.38
- - -1.34 -0.52 0.56 0.73 1.12 0.37 - - - - 1.43 0.81 0.53 1.27
-3.64 -3.36 -3.32 -3.38 -2.03 -2.3 -1.69 -2.21 -6.39 -7.33 -7.3 -6.4 1.93 2.69 1.13 1.1
0.1 -6.61 -0.24 0.25 0.96 -0.62 -0.47 -0.76 -6.1 -5.23 -2.42 -2.04 1.15 0.87 0.65 1.53
-0.05 -0.3 -0.09 0.47 1.48 0.6 1.1 1.05 -2.99 -4.16 -3.12 -4.49 -0.24 -0.28 -1.47 0.01
-0.48 -0.96 -0.53 -0.95 0.78 0.44 0.95 -0.5 -3.38 -3.43 -1.58 -1.28 1.03 1.0 0.29 0.73
- -3.58 1.05 0.8 0.76 0.8 0.32 0.74 - - -0.96 -1.26 -0.39 -0.22 0.85 0.49
- - -5.53 - 1.22 0.69 1.22 0.86 -7.27 -7.21 -4.01 -5.28 1.29 0.48 0.39 1.41
- - - - 3.45 2.33 - - - - - - - - - -
-0.28 1.55 0.55 -0.7 2.55 2.11 - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.