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Heatmap: Cluster_27 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.71 -0.48 -1.06 -1.26 -1.07 -0.86 -0.17 -0.55 -4.11 -4.0 -1.13 -1.57 1.42 1.19 0.86 1.3
1.72 -0.22 1.51 -0.85 -0.48 0.1 2.49 -4.86 - - - -0.03 - - - -
-0.26 -0.46 -3.17 -3.84 -3.59 -1.71 -6.3 -1.04 -5.47 -6.99 - -4.48 1.81 2.39 1.11 1.26
3.91 - - - - -3.0 - - - - - - - -0.18 - -
- - - - - - - -1.61 - - - - - - 3.97 -
3.97 -4.87 - - - - -10.01 -2.59 -4.87 -3.91 -7.09 -6.46 - - - -
-0.13 -2.66 - - - - -2.84 0.78 - -0.47 - - - - 3.07 1.97
- -0.01 - - - - - 3.58 0.58 0.63 - - - - - -
-1.78 0.12 -4.62 - - - -2.72 2.6 0.24 1.13 -2.3 - -1.14 -2.24 1.75 -0.38
-1.27 -0.39 - -4.1 - - -4.11 2.58 0.4 1.3 - - -2.52 - 2.15 -1.65
-1.68 -2.73 - - - - -3.73 1.68 -1.37 -1.34 - -2.37 -0.48 -0.57 3.3 -
3.44 2.33 -4.8 -6.47 - -4.03 - -7.14 - - - - - - - -
- - - - - - - -8.3 - - - - 0.87 1.72 2.95 1.67
3.11 - -0.04 - 1.1 - 2.1 - - - - - - - - -
3.92 -2.62 -3.21 -3.19 -2.7 -3.22 -4.76 -5.24 -6.46 -8.41 -5.2 -5.31 -5.55 -5.91 -5.16 -5.26
0.03 0.3 0.45 0.89 -4.19 -1.61 2.36 -3.76 -5.32 -3.26 -1.06 -2.33 -3.99 - 1.89 -1.53
-0.97 -1.02 - - - - -1.39 -1.3 -5.08 -4.04 -1.97 -2.18 0.93 1.68 2.42 1.66
-1.79 - - - - - - 0.32 -2.39 -0.77 - - - 1.15 3.39 -0.02
-0.78 - - - - - - - - - - - - - 3.95 -
- - - - - - - -3.44 - - - - - - 3.99 -
0.39 0.03 -7.76 -7.43 -3.46 -4.21 -5.62 0.03 0.27 0.47 -5.52 - 1.37 -0.71 0.04 2.49
1.67 -2.28 -2.58 - -1.6 -1.62 -1.77 -1.51 -4.33 - - - 1.65 1.5 1.31 1.41
0.71 -0.45 -1.03 -1.52 -0.83 -0.88 -0.09 -1.22 -1.37 -0.66 -0.28 -0.44 0.75 1.04 1.18 0.79
4.0 - - - - - - - - - - - - - - -
3.77 1.19 - - -9.12 -8.28 - -5.63 -7.68 - - - - -6.11 - -
1.47 -0.73 -1.11 -1.58 -1.58 -1.0 0.51 -0.45 -1.47 -2.22 -0.14 1.28 0.3 0.73 0.16 -0.11
4.0 - - - - - - - - - - - - - - -
1.52 -0.6 -4.41 -5.15 -4.09 -5.24 -5.31 1.56 -7.23 -6.17 -5.82 -4.34 1.44 0.88 0.67 1.64
-1.08 - -0.29 -1.28 -0.89 1.94 3.11 -4.26 - - -1.94 -0.05 - - - -
- - - - - - - 4.0 - - - - - - - -
1.12 -3.37 -2.08 -4.19 -2.47 -2.82 -0.98 -0.24 -3.95 -7.06 -6.03 -2.81 1.21 1.6 1.98 1.17
-1.42 -0.31 - - - - -4.4 1.78 -1.05 0.99 - - -0.75 -1.26 2.81 -0.28
-2.03 -0.17 - - - - -3.26 2.16 0.73 1.13 -3.62 -3.15 -1.88 -0.47 2.32 -2.0
-1.14 -1.3 - - - - -2.84 2.08 1.38 1.41 -4.91 -5.01 -2.72 -2.5 2.34 -3.85
-2.08 -3.9 - -3.97 - - -1.99 2.13 1.51 0.99 - -2.22 - -0.99 2.31 -1.01
-1.12 -0.7 - -3.76 - - -2.5 2.98 0.74 0.76 -4.47 -4.99 -2.65 -1.82 1.47 -2.92
-0.95 -1.63 - -0.83 - - -2.07 1.61 0.47 0.59 -3.28 -2.97 -3.66 -0.5 2.64 0.22
-2.46 -2.82 - - - - -3.04 -1.99 -1.22 -0.87 -4.75 -4.28 1.48 1.63 2.12 2.0
-2.26 -1.4 - -3.82 - - -4.05 2.82 0.32 1.4 - - - -1.65 1.9 -1.66
-3.47 - - - - - - - - - - - - - 3.99 -
-0.46 0.86 - - - - -3.63 2.61 -0.12 0.16 - -5.49 -0.63 -0.61 1.15 0.75
-3.02 -4.22 - -2.42 - - -2.77 1.26 1.8 1.77 - -3.48 -2.19 -0.38 2.18 -0.73
-1.51 - -0.71 -0.97 0.23 0.96 2.87 0.77 - -4.47 -1.85 -0.08 -2.13 -4.26 -2.18 -0.67
-0.82 -1.14 -1.14 -1.06 0.09 -0.06 2.39 1.95 - - 0.41 0.25 -2.6 -2.47 - -4.31
3.96 -2.94 -4.42 -4.09 - - -4.5 -6.48 - - -4.76 -3.86 -3.47 - - -
4.0 - - - - - - - - - - - - - - -
-1.56 -0.6 -1.96 -4.18 -1.28 -1.22 -2.25 2.71 0.54 1.16 - - -0.66 -0.31 0.41 -0.63
3.13 -3.97 -2.71 -1.6 0.82 1.88 -0.24 -4.99 - - -3.39 -2.1 - -5.4 - -
2.64 -3.79 -2.13 -0.76 -2.46 -1.98 -2.51 -2.94 -3.18 -5.69 -4.76 -3.75 1.31 0.08 0.4 1.61
0.95 -2.45 -0.49 -1.57 -2.04 -1.2 0.7 -0.5 - - - -3.93 0.59 2.11 0.4 1.39
-0.5 -1.7 - - - - -1.94 1.67 -1.38 -0.91 -3.88 - -2.68 -1.62 3.29 -1.81
-1.1 0.72 0.26 0.65 -0.21 -0.62 1.32 -1.68 -3.3 - -0.4 -1.58 1.09 0.26 0.42 -0.1
0.18 - - - - -1.06 - -1.09 - - - - - 2.38 1.86 2.35
-0.11 -3.99 -2.04 -2.05 -2.17 -1.24 -1.6 0.16 -3.92 -4.63 -0.97 -1.95 1.64 2.13 0.32 1.49
-3.07 -4.84 - - - - -5.07 -3.7 -3.03 -2.01 -6.42 -5.55 1.58 1.79 2.0 2.28
2.26 - - - - - - - - 2.41 - - - - - 2.56
0.87 -0.44 -1.26 -1.67 -0.89 -2.61 -2.55 1.01 -4.75 -3.33 -3.56 -5.25 1.66 1.0 0.04 1.76
-4.52 -5.61 - - - - -3.41 -1.6 -1.88 -1.65 -6.94 -5.37 1.28 1.66 2.25 2.19
-0.96 1.19 - - - - -6.38 2.19 -0.26 -0.49 -3.97 - -0.8 -0.37 2.31 -0.46
1.97 1.46 - - - - -0.17 -0.3 - - - - 1.83 -0.27 - 1.7
0.67 -6.59 -1.93 -2.51 - - 0.24 0.39 -4.43 -5.38 -2.76 -5.45 1.94 1.58 0.33 1.65
3.93 -1.95 - -4.26 - - -3.26 -2.2 - - -2.93 - - - - -
2.28 0.8 -3.14 -4.8 -2.01 -3.17 0.95 -0.34 - - -2.46 -2.24 -0.06 1.0 0.55 0.46
-0.1 -7.56 -5.45 -5.12 -4.2 -3.98 -1.72 -0.45 - - -2.98 -1.83 2.17 2.17 0.5 1.61
-1.2 -2.7 - - - - - 0.35 0.96 0.59 - - - -1.02 3.05 0.95
3.93 - -1.83 -4.0 -4.79 -3.63 -2.07 - - - - -3.77 - -5.1 - -
0.08 -1.22 -1.97 -2.19 -2.39 -1.58 -1.73 -1.87 -2.95 -3.89 -2.98 -3.37 1.68 1.92 1.62 1.3
-0.26 -2.83 -2.78 -3.95 -2.37 -1.64 -1.62 0.13 -2.45 -2.73 -4.26 -3.09 2.05 1.88 0.48 1.66
2.81 -1.76 -2.0 -2.59 -1.5 -0.98 -1.27 -1.86 -2.82 -2.38 -1.85 -1.45 0.66 0.52 0.26 0.61
3.99 -6.72 - -7.74 -9.52 -9.69 -8.74 - -9.09 - -8.99 - -5.74 -6.02 - -5.86
4.0 - - - - - - - - - - - - - - -
-3.73 -2.24 - - - - - 1.08 0.69 -0.12 - - - 0.68 2.94 0.84
3.07 -4.22 -3.12 -0.77 1.85 1.39 -3.23 -5.29 - - -4.67 -3.06 - - -1.63 -
-1.32 -0.79 - -3.19 - - -4.81 2.42 1.51 1.66 -4.4 -4.51 - -3.33 1.65 -2.36
3.95 -5.57 -7.93 -6.69 -6.8 -7.8 -5.36 -5.99 -7.77 -8.3 -7.26 -8.37 -3.46 -3.81 -4.14 -2.54
-1.63 -1.83 - -3.46 - - -3.15 2.89 0.21 1.42 - - - -1.45 1.84 -
-1.95 - - - - - -0.47 1.53 0.72 1.26 -2.5 -2.61 - - 2.96 -
3.74 - - - - -2.68 - -2.65 - - - - - - 0.8 -0.88
2.72 - - - - - - 0.36 - - - - 1.77 0.68 - 1.65
-0.9 - - - - - - -4.35 - - - - 0.22 -0.88 3.78 -
- - - - - - - 4.0 - - - - - - - -
0.36 -0.15 0.82 0.92 0.81 -0.51 1.06 -0.67 -5.63 -3.07 -4.12 -4.23 -0.57 -0.67 1.18 0.24
- - - - - - - -5.0 - - - - - -0.49 3.87 -0.7
4.0 - - - - - - - - - - - - - - -
- - - - - - 4.0 - - - - - - - - -
2.31 1.62 - - - - - -3.82 0.4 - - - - - 2.72 -
3.97 - -4.55 -1.9 - - - - - - - - - - - -
-1.0 -2.5 - - - - -1.36 1.35 0.72 1.44 -2.94 -4.05 - -1.29 2.84 -1.9
-1.29 -0.05 - - - - 2.34 -0.86 -3.05 -2.92 -1.89 -1.22 -1.61 -1.33 2.61 0.34
-5.31 -5.54 - - - - -3.49 -6.55 - - - - 1.41 1.95 2.61 1.7

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.