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Heatmap: Cluster_272 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- -3.04 -4.5 -1.36 - -2.95 -0.13 1.04 - - - - 2.22 1.02 - 2.5
0.22 -0.95 -0.96 -1.1 -0.78 -0.56 1.06 0.44 -0.2 -0.6 0.78 0.19 0.27 0.15 -0.69 0.39
-4.59 0.07 -2.23 -2.08 -1.28 -1.52 1.2 0.19 - - - - 1.97 0.97 0.08 1.73
0.05 -2.2 -2.46 -1.52 -0.94 -0.53 0.4 0.29 -5.87 -6.39 -3.66 -1.68 1.45 1.77 0.73 1.17
- -2.47 - - - - 1.88 1.75 - - - - 1.78 0.54 0.44 1.34
-2.69 -1.06 -2.63 -3.88 -1.76 - 0.87 -0.35 - -1.0 -3.55 -3.65 1.6 1.46 -1.33 2.43
0.11 -0.21 -1.61 -1.59 -0.96 -0.84 0.72 0.41 -4.47 -5.57 -4.84 -5.96 1.13 1.37 1.1 1.2
- - - - - - 1.63 0.43 - - 0.16 - - - 3.38 -
0.49 -0.89 -0.51 -3.46 -2.22 -1.77 0.38 1.2 -2.32 -1.79 -1.34 -1.28 1.09 1.17 -0.13 1.36
-0.7 -1.94 -3.5 -3.17 -1.79 -2.32 -0.7 -0.5 -4.1 -4.04 -6.01 -4.53 1.97 1.09 0.39 2.48
-0.42 -5.65 -1.32 -1.88 -1.4 -0.83 0.06 0.52 -5.74 -5.68 -2.26 -1.38 1.61 1.31 1.06 1.53
-0.66 -5.46 -3.29 -3.73 -2.75 -1.51 -0.45 0.25 - -5.23 -3.39 -2.72 1.92 1.42 -2.4 2.54
-0.1 -3.32 -2.08 -2.59 -1.98 -0.77 0.05 0.23 -8.91 -8.33 -2.85 -1.92 1.83 1.13 0.19 2.07
-0.5 -1.54 -2.33 -2.57 -1.72 -1.33 -0.62 -0.65 -2.33 -1.86 -1.38 -1.66 1.68 1.6 1.49 1.24
-0.72 -1.99 -0.72 -0.94 -0.91 -1.1 1.22 0.13 -0.33 -0.29 1.05 0.11 0.5 -0.03 -1.0 0.96
0.01 -6.67 -2.7 -4.5 -3.85 -2.86 -0.04 0.13 - -7.87 -3.47 -1.01 2.02 1.63 0.55 1.72
-1.56 - - - - -0.81 -0.45 -1.43 - - - - - 0.04 3.7 -
- - - - - - 4.0 - - - - - - - - -
-2.46 -4.65 -2.71 -2.69 -1.98 -2.24 -1.15 -0.45 -2.03 -3.13 -2.09 -4.8 1.93 1.68 1.24 1.93
-0.31 -0.91 0.09 -0.51 -2.53 -0.69 -1.16 0.93 -1.49 - -2.98 - 2.31 - 1.25 0.94
-0.72 0.66 -0.3 -0.12 0.46 -0.47 1.84 0.69 0.51 0.51 -0.07 -1.85 -2.87 -2.53 -2.22 -2.51
0.08 -1.12 -1.63 -1.9 -0.74 -1.2 0.6 -0.18 -0.41 -0.88 -0.12 -0.73 1.07 0.9 0.62 1.1
- - - - - - 1.76 1.39 -1.5 -1.9 - - 1.77 1.19 -0.65 1.61
0.36 -0.53 -1.02 -0.65 -1.65 -1.01 0.18 0.28 -1.21 -1.28 -1.11 -1.19 1.21 0.86 0.75 1.12
0.11 -2.03 -1.7 -2.18 - - 0.78 0.34 - - -0.15 -2.37 1.8 1.07 0.38 1.68
1.44 -1.15 -1.03 -0.92 -0.7 -1.07 1.12 0.87 -0.74 -0.98 0.19 -0.8 0.05 0.21 -0.38 -0.06
-0.11 -3.63 -1.86 -2.61 -1.31 -1.01 -0.01 0.25 -7.5 -3.74 -2.45 -1.68 1.72 1.83 1.05 0.98
-0.15 - - -0.02 -0.22 - 2.88 2.24 - - - 0.21 - - - -
- -1.31 - - -0.4 - 1.98 1.02 - - - - 2.39 0.29 - 1.26
0.66 -1.81 -1.01 -0.52 -0.45 -0.22 1.03 0.4 -0.4 -0.58 0.19 -1.05 1.15 -0.09 -1.14 0.39
0.68 -0.18 -1.09 -0.44 -0.7 -1.0 0.6 0.35 -0.18 -1.17 -0.23 -1.06 1.3 0.44 -0.53 0.3
-1.72 -0.5 - -0.55 - -0.91 2.55 -1.13 0.71 - -0.2 - - -0.07 2.0 -
-1.14 -3.47 -3.19 -2.79 -2.35 -1.41 -1.04 -0.29 - - -3.84 -3.3 0.62 1.23 2.91 0.8
-0.73 -2.63 -3.04 -2.82 -1.8 -1.66 -0.11 -0.03 -10.05 -8.4 -4.07 -1.94 1.85 1.6 1.14 1.73
0.14 -0.16 -0.29 0.35 -0.33 -0.09 0.62 0.33 -0.08 0.02 0.59 -0.13 -0.11 -0.56 -0.86 -0.23
- - - - - - -5.07 -5.47 - - - - 3.07 1.81 0.49 1.39
1.56 0.2 0.62 1.29 -1.78 -1.93 -2.12 2.32 -1.5 -4.25 -1.63 -0.32 -1.0 - - -3.12
0.0 -0.41 -3.98 -2.65 -0.26 -0.7 1.77 0.97 -0.61 -0.77 0.48 -0.84 -0.48 -1.58 0.49 0.62
0.25 -5.07 -1.25 -2.22 -1.19 -0.76 0.85 0.85 -3.57 -4.51 -1.23 -0.73 1.14 1.07 0.86 1.15
-2.8 - -5.63 -5.6 -4.86 -3.84 -2.34 -2.52 - - -6.16 -3.9 2.2 2.06 2.08 1.18
0.26 -1.13 - - -3.06 - 1.21 1.25 - - - - 1.82 1.34 -1.29 1.61
-0.21 -3.54 -2.01 -3.17 -1.48 -0.88 -0.08 0.91 -6.94 -3.17 -3.38 -1.11 1.6 1.91 0.35 1.15
0.18 -6.78 -2.87 -2.94 -1.86 -1.5 0.54 -0.02 - -6.64 -1.56 -0.89 1.99 1.36 0.18 1.58
0.19 -1.87 -0.94 0.0 -0.97 -2.48 0.41 1.57 - - - - 1.74 0.03 0.14 1.38
0.17 -0.04 -1.81 -1.38 -1.68 -1.57 1.01 0.34 -1.3 -0.66 -0.48 -0.86 1.09 0.8 -0.33 1.22
- -0.05 -1.52 -1.9 -0.74 0.47 2.25 1.81 -2.21 -1.57 0.06 0.87 - - -0.97 -2.07
-0.22 -0.51 -2.08 0.25 -0.26 -0.31 1.28 0.82 0.58 0.08 -0.24 -1.71 -0.52 -0.28 -2.08 0.78
0.88 -0.3 -1.45 -0.59 -1.15 -0.96 0.25 0.03 -0.29 -0.95 -0.29 -0.84 0.96 0.6 0.25 0.83
-0.65 -5.52 -3.67 -3.78 -2.72 -2.08 -0.56 -0.64 -5.95 -5.7 -2.74 -2.21 2.17 1.75 1.03 1.67
- - - - - - 3.9 0.03 - - - - - - - -
- - - - - - 1.64 1.93 - - - - 2.63 1.53 - -
-2.09 -5.7 -4.57 -3.5 -2.56 -3.86 -1.18 -0.05 -2.99 -1.82 -2.31 -2.42 1.71 2.09 1.35 1.63
-0.1 -1.39 -2.85 -3.32 -1.63 -1.38 0.03 0.24 -4.05 -4.2 -1.09 -1.34 2.08 1.11 -0.22 1.72
0.11 -0.24 -1.06 -1.15 0.15 -1.23 0.89 0.94 -0.27 0.12 -0.26 -0.27 0.6 -0.13 -1.65 0.6
-1.71 -4.04 -4.43 -5.97 -5.1 -3.51 -1.86 -1.47 -10.26 -7.61 -5.26 -2.99 2.19 2.08 1.35 1.73
-0.01 -1.21 -0.83 -1.99 -1.61 -1.15 0.57 -0.29 -0.59 -0.99 0.14 0.02 1.38 0.82 0.15 0.93
-1.41 -3.92 -1.03 -1.44 - - 1.45 0.01 -2.86 - -0.68 -1.71 1.9 1.26 -0.3 1.57
-0.15 -2.06 -1.64 -0.3 -0.93 -0.58 1.24 0.08 -0.73 0.18 0.9 -0.89 0.86 0.42 -1.75 0.61
-3.62 2.02 1.42 -0.44 -2.65 -1.22 2.5 - -2.19 - -2.09 0.8 - - - -
- - - - - - -3.55 -1.92 - -3.81 - - 2.15 1.21 1.88 2.37
-0.63 -1.42 -1.5 -1.79 -1.15 -1.42 0.97 -0.65 -1.17 -0.71 0.16 -0.15 1.15 1.04 -0.03 1.38
-3.74 -5.3 -3.48 -3.57 -2.99 -3.02 -1.55 -0.94 -2.99 -3.74 -3.73 -4.08 2.61 1.46 0.55 1.98
0.99 - - - - - 3.53 1.29 - - - - - - - -
0.01 -1.37 -1.35 -2.1 -1.47 -2.66 -0.21 -0.55 -1.69 -3.22 -1.65 -2.07 1.66 1.42 1.22 1.47
- - - - - - 4.0 - - - - - - - - -
-0.05 -1.49 -1.94 -2.19 -0.91 -1.36 0.34 0.03 - - - - 1.85 1.7 0.85 1.23
- - - - - - 4.0 - - - - - - - - -
- - - - - - 4.0 - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.