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Heatmap: Cluster_122 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-0.27 -0.9 0.59 0.91 0.48 1.51 -0.26 -0.57 -0.89 -0.75 -0.5 -0.46 -0.46 -0.35 -0.61 -0.38
- - 1.06 0.88 2.25 2.18 -1.3 -5.87 - - - -3.06 -3.3 -4.39 1.0 -3.42
-8.63 - 0.26 -0.16 1.0 1.34 -0.3 -1.15 -4.73 -2.42 -3.16 -3.19 1.29 0.85 0.14 1.22
- - 1.11 0.64 2.12 2.04 0.54 -1.53 - - -0.24 0.06 - - -2.95 -
-1.62 -3.94 0.89 1.15 1.91 2.18 -2.18 -4.18 -4.59 -3.21 0.03 0.16 -2.63 -2.83 -2.26 -2.52
-3.33 -2.3 1.21 1.45 1.62 2.58 -1.94 -3.67 -3.97 -3.33 -1.33 -1.48 -3.63 -6.31 -2.65 -3.75
-2.69 -2.59 1.05 1.63 1.69 2.29 -2.5 -6.12 -2.93 -1.55 -0.7 -0.24 -4.72 -5.93 -3.99 -2.69
-3.81 -4.92 1.67 1.15 1.75 2.46 -5.13 -7.5 -4.85 -4.34 -1.97 -2.19 -4.61 -3.26 -0.57 -2.17
0.08 -5.43 1.0 1.45 0.79 2.34 -1.39 -3.45 - -8.13 -0.81 -0.6 -2.53 -1.0 -0.33 -2.04
-5.92 -8.85 0.77 0.48 2.12 2.63 -3.26 -5.43 -3.29 -3.92 -1.14 0.63 - - -4.38 -
-4.4 - 1.74 1.11 1.21 2.86 -1.22 -9.37 - - -3.86 -1.41 - - -5.82 -
-3.3 -6.64 -1.16 -1.29 -1.07 -0.53 -2.78 -1.54 -8.75 -8.7 -2.12 -1.96 1.83 1.81 1.3 1.74
- - 0.96 0.11 2.35 2.8 -0.55 - -3.19 - -3.08 - - - - -
-6.33 -9.02 1.75 1.7 1.42 2.59 -4.24 -8.04 -9.06 -7.58 -1.58 -1.83 - - -7.34 -
-0.26 -2.07 0.63 0.7 1.37 1.98 -1.76 -1.75 -7.41 -5.96 -1.67 -1.29 -0.12 -0.13 -0.12 0.19
-4.9 -6.03 0.39 2.13 1.73 2.54 -0.62 -6.63 - - -4.79 -3.89 -5.87 -4.64 -2.31 -2.82
-8.61 -1.94 1.32 1.07 2.06 2.32 -6.98 -4.79 -2.75 -2.55 -0.38 -0.28 - - - -
-2.04 -0.43 0.94 1.23 1.66 2.48 -1.22 -2.93 -4.96 -4.81 -1.55 -1.77 -2.71 -2.27 -1.99 -2.92
-1.69 -3.35 0.73 1.31 1.85 1.79 -0.29 -0.36 -3.46 -4.01 0.06 0.07 -2.99 -3.87 -4.05 -1.87
-2.06 -5.4 1.23 1.43 1.92 2.11 0.18 -4.36 - - -1.04 -0.19 -7.28 -6.05 -6.3 -5.81
-2.49 -3.46 1.34 1.85 1.0 2.44 -3.93 -2.56 -3.85 -2.1 0.13 -0.98 -7.39 -8.46 -8.72 -9.8
-2.12 -1.85 1.34 1.22 1.51 1.91 -1.12 -1.16 -2.39 -1.05 0.11 -0.17 -3.7 -2.63 -2.73 -3.51
-1.11 - 1.23 0.95 1.75 2.53 - - - -2.99 -0.15 0.11 - - - -
-3.04 -1.55 1.91 0.16 0.91 2.23 -1.52 -0.98 -2.93 -3.63 -2.59 -2.35 0.41 -2.13 -5.06 0.11
-3.44 -1.59 1.36 1.09 1.03 2.29 -1.85 -1.22 -1.25 -1.7 -0.47 -0.62 -2.85 -2.73 -0.65 -2.21
-3.94 -2.95 0.78 0.83 1.88 1.76 -2.7 -2.39 -2.72 -2.37 -1.17 -0.83 -0.53 -0.1 0.14 -0.28
- -4.92 0.56 1.8 1.68 2.76 -1.36 -1.45 - - -2.14 -3.83 - - - -
-5.84 -4.18 -1.12 -0.26 -0.27 0.32 -2.07 -3.15 - -6.99 -3.79 -4.06 1.94 1.43 -0.65 2.29
- - 0.48 1.73 2.02 2.25 - - - - -0.6 - - -1.53 0.54 -
- - 1.57 0.65 1.99 2.65 -0.06 -7.7 - - -4.17 -2.27 - - - -
-3.85 -2.62 0.05 0.37 0.91 1.41 -3.38 -3.25 - -6.57 -6.53 -4.18 1.08 1.67 1.14 0.19
-7.1 -1.35 1.19 1.36 0.94 2.34 -2.71 -3.28 -4.6 -3.96 0.33 0.12 -1.72 -1.7 -1.33 -4.43
- -2.27 1.29 0.78 1.95 2.53 0.21 -8.18 - - -4.86 -2.96 - - -0.64 -
-2.23 -0.49 0.83 1.02 2.13 2.04 -0.25 -4.83 -4.33 - -0.15 -0.61 -4.97 -5.07 -2.41 -5.1
-5.02 -3.45 1.18 1.51 1.4 2.78 -2.9 -4.87 -4.81 -7.03 -1.86 -1.37 -3.32 -3.24 -3.89 -3.13
-3.01 -3.28 0.78 1.56 1.21 2.39 -0.86 -2.73 -2.8 -2.32 0.11 -0.41 -2.72 -3.1 -2.36 -2.31
-4.2 -8.69 1.68 1.3 1.89 2.4 0.03 -6.83 - - -4.73 -2.47 - - -5.3 -
-4.47 -4.87 0.98 0.96 1.66 2.07 -0.06 -1.55 -7.48 - -2.48 -0.18 -0.22 -0.88 -1.58 -0.9
-5.88 -2.33 0.76 0.92 2.01 1.89 -1.38 -1.73 -1.83 -0.57 0.53 0.42 -8.08 -6.69 -6.62 -7.94
- -5.0 1.32 0.77 1.44 2.25 -1.81 -0.83 -2.26 -2.73 -1.58 -1.18 -0.04 -0.87 - -0.32
-3.96 -5.53 1.26 1.22 2.06 2.4 -2.72 -1.77 -4.87 -5.81 -1.45 -2.23 -2.39 -3.85 -3.0 -1.88
-1.9 -0.92 0.8 0.44 1.79 1.95 -4.22 -2.31 -4.28 -3.15 -1.63 -1.24 -1.21 -0.71 0.59 0.07
-2.58 -3.28 1.73 1.35 0.99 2.56 -4.61 -5.02 -5.79 -8.42 -0.33 -0.48 -4.09 -5.91 -2.73 -2.57
-3.45 -7.0 1.13 1.89 1.7 2.66 -3.91 -4.42 -6.34 -6.28 -3.25 -3.48 -6.57 -5.09 -4.6 -
-3.37 -0.22 1.0 1.41 1.48 2.09 -2.2 -1.96 -0.97 -1.03 -0.76 -1.67 -2.28 -2.46 -1.77 -1.87
- - 1.25 1.6 1.19 2.67 -3.72 -0.36 -4.14 -2.5 -1.05 -1.78 - - -4.41 -
-8.21 -5.69 0.94 1.69 1.02 3.06 -4.51 -4.78 -9.43 -4.79 -2.39 -2.67 -9.09 -10.19 -8.11 -
-3.83 - 1.63 0.77 2.13 2.42 -0.07 -6.52 - - -4.2 -1.9 - - -3.79 -5.89
-0.88 -1.43 1.0 1.29 1.25 2.33 -0.03 -1.79 -7.31 -7.25 -3.14 -3.62 -1.79 -1.6 -0.53 -1.18
-6.17 -3.43 1.5 1.11 1.09 2.42 -1.5 -2.12 -2.89 -2.83 -0.4 -0.58 -1.85 -1.66 -2.05 -1.69
-1.26 -2.23 0.76 0.65 1.72 2.35 -0.17 -2.64 -1.42 -1.8 -0.89 -0.96 -2.44 -2.18 -1.47 -2.57
- - 1.6 1.67 1.2 2.79 -1.98 -6.42 - - -4.11 -2.75 - - -3.88 -
-2.12 -4.14 0.8 0.6 2.1 2.34 -1.67 -3.88 -4.5 -2.5 -0.49 -0.45 -2.39 -1.58 -2.42 -1.58
-4.02 -4.92 1.06 1.16 2.11 2.43 -5.05 -4.49 -2.43 -1.65 -2.05 -1.95 -3.1 -2.95 -1.46 -2.2
-9.15 -8.9 1.3 0.95 1.71 2.36 0.85 -1.73 -7.82 -7.76 -2.97 -0.52 -2.88 -5.24 -5.49 -4.59
- -3.91 1.35 1.17 2.16 2.26 -0.4 -2.02 -4.14 -4.09 -2.04 -1.15 - -3.96 - -
-1.39 -3.36 0.62 1.52 1.65 1.73 -0.61 -0.76 -2.08 -3.43 -1.51 -0.66 -0.8 -1.25 -0.68 -1.03
-8.61 - 1.74 1.66 1.81 2.46 -2.29 -9.13 -5.41 -6.57 -3.6 -2.7 - - -5.91 -
-1.03 -1.14 0.84 1.47 0.84 1.91 -0.89 -1.03 -2.13 -2.33 -0.35 -0.04 -1.31 -1.76 -0.75 -1.19
-1.66 -2.42 0.62 0.85 1.06 1.47 -0.31 0.31 -2.59 -2.92 -0.01 0.34 -0.7 -0.62 -0.26 -0.75
-5.4 -7.19 1.46 1.1 1.46 2.58 -5.31 -6.03 -4.32 -4.21 -1.35 -1.49 -1.09 -1.65 -5.37 -0.57
-5.21 -5.35 1.27 1.66 1.87 2.37 -0.38 -1.54 -5.88 -5.46 -5.79 -2.15 -3.26 -4.65 - -
-5.51 - 1.1 1.02 1.61 2.64 - - -2.27 -1.32 -1.67 0.66 - - - -
-3.08 -3.38 1.24 1.61 1.67 2.35 -1.11 -5.76 -3.87 -3.23 -0.73 -0.58 -4.52 -5.62 -3.55 -5.65
-3.48 -7.18 0.71 0.86 1.49 1.65 -0.95 -0.59 -4.29 -6.04 -1.58 -0.81 -0.16 0.43 0.48 -0.51
-6.58 -7.32 1.44 1.08 1.82 2.48 0.86 -4.4 - - -4.55 -2.78 - - - -
- -1.3 1.08 1.8 1.88 2.64 - -2.92 - - - - - - - -
-9.21 - 1.84 1.31 1.55 2.51 -0.23 -2.26 - - -4.01 -2.85 -7.52 -8.61 -6.54 -6.06
-0.1 -1.92 0.66 1.29 0.81 1.98 -0.61 -1.53 -0.48 -0.23 -0.5 -0.8 -1.36 -1.94 -2.24 -1.47
-3.3 -4.84 1.61 1.57 1.26 2.37 -1.25 -1.89 -4.89 -7.53 -4.4 -1.95 -1.33 -3.26 -1.37 -1.57
-1.5 -1.98 0.67 1.09 1.71 2.07 -0.68 -1.23 -1.43 -1.48 -0.19 -0.78 -2.09 -2.29 -2.37 -1.62
-6.54 -7.83 1.6 1.2 2.18 2.54 -4.28 -5.06 -6.88 -6.23 -4.89 -5.12 -5.39 -6.36 -3.59 -4.73
- - 1.69 1.22 1.46 2.58 0.58 -4.09 - - -3.87 -3.39 - - - -
-3.34 -5.48 1.14 1.56 1.67 2.59 -4.01 -5.46 -3.92 -4.42 -1.03 -0.77 -4.99 -3.85 -3.33 -4.04
-3.58 -4.07 1.11 1.53 1.67 2.6 -2.52 -4.67 -4.6 -4.79 -0.8 -0.7 -6.31 -5.53 -4.59 -8.01
-2.25 -1.5 1.11 1.22 1.56 1.95 -1.61 -2.26 -2.97 -2.2 0.55 0.52 -4.68 -3.71 -2.59 -3.8
-3.05 -1.51 1.47 0.85 1.1 2.18 -2.94 -1.21 -1.81 -2.13 -1.48 -1.71 -1.7 -1.32 0.44 -1.12
-4.76 - 1.44 1.58 1.67 2.47 -1.88 - - - -2.83 -0.13 - - -2.41 -
-8.48 -6.11 1.53 2.01 0.72 2.87 -6.16 -9.36 - -8.67 -4.0 -4.16 - -8.48 - -
- -6.9 1.05 1.8 1.13 2.61 -4.14 -5.26 -0.22 -2.98 -0.97 -0.77 - - - -
- - 1.26 1.65 1.38 2.62 0.49 -7.79 - - -4.05 -2.01 - - - -
-1.44 -0.21 1.11 0.81 1.87 1.56 -1.48 -1.76 -1.22 -2.44 -1.33 -0.89 -0.87 -1.62 -1.18 -0.44
-3.3 -6.51 1.36 1.35 0.91 2.47 0.66 -1.05 -2.92 -2.55 -1.29 -1.52 - - -2.1 -
-2.67 - 1.2 2.1 0.87 2.52 - -7.09 - - - - - -1.62 0.45 -
-3.63 -5.09 0.96 1.02 1.9 1.96 -3.19 -3.54 -1.06 -0.77 0.4 0.23 -4.55 -3.63 -1.7 -3.21
-3.28 -5.19 1.0 1.3 1.81 2.41 -1.51 -1.35 -4.7 -5.97 -0.99 -0.74 -2.1 -2.76 -3.01 -2.3
-6.89 -5.5 0.98 1.53 1.88 2.55 -1.11 -3.57 -4.73 -5.52 -1.64 -1.7 -5.54 -5.05 -2.25 -3.67
- - 0.87 1.79 1.99 2.42 -0.8 -4.25 - - -1.33 -1.43 - - - -
- - 1.56 1.46 1.75 2.53 - - - - - - 0.21 - - -
- - 0.16 2.48 1.62 2.53 -2.22 - - - -2.83 -2.94 - - - -
-5.81 - 1.06 1.28 1.82 2.38 -0.14 -7.59 - - -1.02 0.41 - - - -
-3.86 - -0.11 2.16 1.95 2.46 -0.52 - - - -2.88 -1.58 - - - -
- - 1.23 2.0 1.12 2.76 - -8.87 - - -1.13 -2.04 - - - -
-3.2 -3.91 1.42 1.11 1.41 2.33 -1.08 -1.3 -5.31 -5.7 -2.17 -0.71 -2.22 -1.91 -0.68 -1.19
-4.74 -4.78 1.38 1.32 1.82 2.3 -2.56 -3.73 -2.91 -2.06 -0.38 -0.68 -4.19 -2.96 -3.05 -3.92
-3.76 -5.79 0.44 0.22 1.37 1.34 -3.29 -1.13 -1.55 -2.25 -0.49 -0.89 1.18 0.74 -0.34 0.24
- -6.27 0.54 2.2 1.61 2.67 -3.75 -9.95 -4.48 -3.52 -2.87 -2.97 - - -4.42 -
- -2.83 1.22 0.82 1.66 2.57 0.53 -4.35 - - -4.2 -1.5 - - -0.39 -
-4.05 - 1.45 -2.92 0.97 2.14 - -0.66 - - - - 0.66 0.15 0.64 0.86
-3.6 -9.71 1.48 1.76 1.51 2.67 -5.76 -11.83 - -8.56 -4.13 -3.93 -4.95 -6.36 -1.97 -3.69
-0.95 -0.63 0.76 0.97 1.34 1.65 -1.99 -0.45 - -3.86 -2.24 -1.93 1.01 0.24 -1.6 -1.11
-3.28 -2.63 -0.95 -0.55 0.69 0.73 -1.13 -2.07 -2.74 -4.63 -1.57 -1.26 0.94 1.18 0.96 1.8
- - 1.91 1.65 0.56 2.87 -6.79 -7.39 -7.09 -7.04 -4.41 -3.02 - - - -3.7
- -8.25 1.74 1.34 1.18 2.69 -2.44 -2.82 -1.66 -3.89 -1.42 -1.77 -6.78 - - -5.68
- -4.63 0.53 0.53 1.59 1.64 -0.04 -0.48 -4.82 -2.12 -0.91 -1.71 0.99 0.17 - 0.04
-3.71 -2.88 1.03 0.92 1.11 1.99 -3.21 -4.57 -5.48 -5.05 -2.52 -1.56 -0.7 0.5 0.4 0.73
-6.52 - 1.99 1.07 0.67 2.84 -4.4 -3.0 -3.35 -2.01 -1.42 -1.85 - - - -
-1.28 -1.96 1.08 1.13 1.51 2.23 -5.45 -4.24 -4.65 -4.59 -2.97 -2.71 -0.93 -0.24 -0.65 0.09
-3.68 -6.23 0.92 1.43 1.41 2.05 -0.42 -1.32 -2.67 -3.75 -1.79 -1.62 -0.14 -1.07 -1.49 -0.32
-4.53 -6.84 1.01 1.59 0.54 2.54 -1.05 -4.01 -4.95 -3.7 -0.55 -0.55 -3.33 -3.76 0.49 -3.69
-1.61 -1.74 0.55 0.78 1.21 1.26 -0.69 -1.41 -3.52 -2.95 -1.01 -0.81 0.49 0.36 -0.09 0.67
- - 1.48 1.48 1.85 2.6 -4.7 -5.18 -1.85 -4.7 -5.08 -1.52 - - - -
-0.95 -1.4 0.73 0.87 1.52 2.06 -1.72 -2.42 -1.28 -2.22 -1.6 - -0.94 0.13 0.03 -1.07
- - 1.81 1.48 0.93 2.54 0.05 -8.67 - - -3.67 -0.41 - - -3.1 -
-3.01 - 0.67 0.05 1.98 2.46 -2.68 -4.89 - -2.89 -1.26 -1.95 - -2.78 1.41 -
-3.18 -1.5 1.5 1.18 0.9 2.44 -0.87 -2.32 -2.24 -6.29 -1.12 -1.6 -1.03 -2.28 -3.59 -0.71
-1.13 -1.29 0.66 1.64 2.02 2.52 -2.41 -2.44 -3.91 -3.53 -3.82 -5.93 - -4.67 - -
0.5 -0.92 0.95 1.33 0.38 2.19 -0.78 -2.61 -2.34 -1.29 -0.33 -0.79 -2.08 -2.03 -1.95 -1.7
- - 1.71 1.88 1.42 2.48 -3.42 -4.85 - - - -3.15 - - -0.87 -
-2.48 -0.56 1.11 0.83 1.64 2.15 -0.87 -1.79 -6.93 -4.55 0.3 0.22 -4.03 -2.56 -3.64 -4.41
- -1.25 1.43 1.06 1.06 2.64 -2.29 -5.75 -5.15 -3.24 0.12 -0.41 - -6.23 -1.83 -
- - 0.53 2.11 1.66 2.71 - - -1.88 - - -1.9 - - - -
-5.54 -4.1 1.22 0.88 1.87 2.24 -3.21 -4.97 -3.38 -3.0 -0.17 -0.27 -2.5 -2.59 -1.06 -1.09
-1.68 -0.64 1.21 1.45 0.72 2.21 -1.69 -1.58 -1.01 -2.06 0.45 0.0 - - - -
- -4.52 1.99 1.58 1.69 2.53 - - - - - - - - - -
-1.72 -2.57 0.42 1.04 1.73 2.24 -0.21 -0.54 -6.75 -5.69 -0.15 -0.14 -2.64 -2.57 -3.34 -1.89
- - 1.65 1.91 0.67 2.44 -3.8 - - - 0.18 -0.19 - - - -
-3.17 -2.82 1.15 1.32 1.56 2.2 -0.51 -2.07 -2.76 -3.56 -0.53 -0.84 -2.85 -2.34 -0.67 -2.92
- - 1.68 0.8 1.78 2.71 -0.66 -3.8 - - -3.43 -1.76 - - - -
-4.52 -2.13 1.07 0.67 2.01 2.25 0.13 -0.75 -7.0 -7.94 -3.04 -1.22 -1.89 -1.53 -2.12 -2.59
-4.74 -3.6 1.62 1.26 1.62 2.36 -4.23 -4.12 -4.43 -2.85 -0.63 -0.57 -3.23 -3.79 -1.92 -2.85
0.01 -1.12 0.35 0.74 0.91 1.21 -0.01 -0.41 0.05 -0.09 0.12 -0.52 -0.91 -1.47 -0.94 -1.11
- - 0.72 0.78 2.54 2.68 -1.75 -5.15 - - - - - -4.51 -4.02 -
-1.68 -2.61 1.21 1.32 0.89 2.6 -2.49 -2.74 -2.7 -2.19 -0.05 -0.42 -3.62 -4.13 -2.77 -3.21
-0.95 - 1.27 0.88 2.17 2.39 0.21 -6.36 - - -3.54 -2.26 - - - -
- -3.09 1.37 0.91 1.94 2.51 0.58 -8.72 - - -5.39 -1.45 - - - -
-0.57 -2.69 0.7 1.13 1.76 1.63 -0.63 -1.32 -2.4 -1.79 0.11 -0.12 -2.07 -2.24 -0.78 -1.74
-1.31 -5.71 0.72 0.85 0.58 1.2 -1.32 -0.17 -4.09 -3.27 -0.23 0.01 0.55 -0.17 0.47 0.37
-3.49 -1.56 0.39 0.73 1.58 1.47 -0.55 -1.42 -4.74 -5.1 0.14 0.51 -0.62 -0.41 0.2 -0.67
-4.09 -4.0 1.09 1.15 2.01 1.9 -1.5 -2.63 -1.12 -1.13 0.11 0.15 -4.76 -4.94 -6.96 -4.15
-7.24 - -0.07 -0.46 0.92 1.19 -1.41 -4.79 -3.75 - -2.07 -1.37 -3.45 -2.54 3.13 -4.57
-1.58 -7.68 0.35 0.61 1.62 1.89 -0.76 -0.5 - -8.11 -2.84 -0.59 0.06 -0.33 0.2 -0.01
-1.6 -3.28 1.02 1.23 0.79 1.89 -3.07 -1.16 -10.99 -7.38 -1.23 -0.3 -0.49 -1.64 1.02 -0.19

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.