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Heatmap: Cluster_122 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
19.42 12.51 35.18 43.82 32.55 66.64 19.55 15.78 12.66 13.89 16.57 16.96 16.95 18.38 15.36 17.98
0.0 0.0 2.71 2.4 6.21 5.92 0.53 0.02 0.0 0.0 0.0 0.16 0.13 0.06 2.61 0.12
0.01 0.0 3.21 2.4 5.36 6.81 2.18 1.21 0.1 0.5 0.3 0.29 6.56 4.83 2.96 6.26
0.0 0.0 3.4 2.45 6.84 6.45 2.29 0.54 0.0 0.0 1.33 1.64 0.0 0.0 0.2 0.0
21.27 4.27 120.95 144.73 245.65 297.53 14.45 3.6 2.71 7.09 67.01 72.9 10.58 9.18 13.7 11.37
0.39 0.8 9.12 10.73 12.04 23.55 1.03 0.31 0.25 0.39 1.56 1.41 0.32 0.05 0.63 0.29
16.65 17.81 222.47 332.45 345.75 526.33 19.03 1.55 14.1 36.66 66.19 90.96 4.09 1.76 6.75 16.66
6.82 3.17 305.05 213.38 323.0 526.16 2.73 0.53 3.33 4.72 24.4 21.02 3.92 10.03 64.76 21.36
23.55 0.52 44.64 60.87 38.51 112.73 8.49 2.05 0.0 0.08 12.71 14.74 3.87 11.19 17.7 5.42
0.25 0.03 25.7 21.0 65.48 92.99 1.57 0.35 1.54 0.99 6.81 23.22 0.0 0.0 0.72 0.0
0.97 0.0 68.11 43.99 47.33 148.47 8.75 0.03 0.0 0.0 1.41 7.71 0.0 0.0 0.36 0.0
4.15 0.41 18.36 16.69 19.48 28.39 5.96 14.03 0.09 0.1 9.42 10.54 145.33 143.83 101.09 136.86
0.0 0.0 8.87 4.9 23.26 31.79 3.11 0.0 0.5 0.0 0.54 0.0 0.0 0.0 0.0 0.0
1.59 0.25 429.1 415.95 342.93 769.75 6.76 0.49 0.24 0.67 42.66 35.99 0.0 0.0 0.79 0.0
44.26 12.63 81.97 86.31 137.27 210.06 15.68 15.83 0.31 0.85 16.71 21.71 48.83 48.48 48.77 60.67
0.32 0.14 12.33 41.18 31.18 54.61 6.14 0.09 0.0 0.0 0.34 0.63 0.16 0.38 1.9 1.33
0.12 12.12 116.11 97.63 194.02 232.69 0.37 1.68 6.93 7.93 35.78 38.34 0.0 0.0 0.0 0.0
8.51 26.08 67.5 82.49 111.18 195.58 15.05 4.6 1.13 1.25 11.99 10.33 5.35 7.28 8.82 4.65
34.85 11.02 186.61 279.47 406.67 390.48 92.27 87.62 10.24 6.99 117.31 117.77 14.13 7.72 6.78 30.76
3.89 0.38 38.15 43.61 61.59 69.81 18.42 0.79 0.0 0.0 7.88 14.25 0.1 0.25 0.21 0.29
13.87 7.06 196.72 279.96 155.84 422.48 5.1 13.19 5.4 18.13 85.18 39.43 0.46 0.22 0.18 0.09
2.89 3.5 31.91 29.41 35.8 47.2 5.77 5.65 2.4 6.06 13.63 11.16 0.97 2.03 1.9 1.11
0.22 0.0 1.14 0.94 1.63 2.8 0.0 0.0 0.0 0.06 0.44 0.52 0.0 0.0 0.0 0.0
0.5 1.4 15.44 4.58 7.68 19.18 1.43 2.08 0.54 0.33 0.68 0.8 5.44 0.94 0.12 4.42
17.84 64.5 499.21 412.43 395.61 949.15 53.74 83.55 81.39 59.77 140.08 126.03 26.91 29.34 124.1 41.93
8.82 17.53 232.24 240.21 496.41 457.75 20.8 25.74 20.54 26.08 60.16 75.92 93.92 125.98 149.25 110.97
0.0 0.02 0.83 1.95 1.79 3.79 0.22 0.2 0.0 0.0 0.13 0.04 0.0 0.0 0.0 0.0
0.12 0.37 3.07 5.56 5.53 8.29 1.59 0.75 0.0 0.05 0.48 0.4 25.49 17.98 4.24 32.6
0.0 0.0 1.17 2.78 3.39 3.99 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.29 1.21 0.0
0.0 0.0 33.9 17.91 45.27 71.84 10.95 0.06 0.0 0.0 0.64 2.37 0.0 0.0 0.0 0.0
0.54 1.27 8.11 10.1 14.66 20.73 0.75 0.82 0.0 0.08 0.08 0.43 16.49 24.98 17.19 8.95
0.05 2.48 14.37 16.26 12.07 32.07 0.96 0.65 0.26 0.41 7.93 6.84 1.92 1.95 2.51 0.29
0.0 0.34 4.08 2.87 6.45 9.65 1.93 0.01 0.0 0.0 0.06 0.21 0.0 0.0 1.07 0.0
0.39 1.32 3.28 3.75 8.11 7.59 1.55 0.06 0.09 0.0 1.67 1.21 0.06 0.05 0.35 0.05
1.86 5.51 136.92 171.85 159.54 414.28 8.11 2.06 2.15 0.46 16.62 23.3 6.06 6.41 4.07 6.87
14.93 12.46 206.91 355.45 279.06 634.56 66.37 18.23 17.28 24.25 130.25 90.59 18.37 14.07 23.46 24.38
0.22 0.01 13.12 10.06 15.22 21.69 4.19 0.04 0.0 0.0 0.15 0.74 0.0 0.0 0.1 0.0
2.15 1.63 94.29 93.28 151.12 200.82 45.78 16.32 0.27 0.0 8.56 42.27 40.92 26.02 16.0 25.63
1.76 20.65 176.23 196.58 418.52 386.69 39.95 31.4 29.22 69.83 150.59 139.53 0.38 1.0 1.06 0.42
0.0 0.06 4.67 3.18 5.05 8.86 0.53 1.05 0.39 0.28 0.63 0.82 1.81 1.02 0.0 1.49
0.89 0.3 32.89 32.03 57.5 72.5 2.09 4.03 0.47 0.25 5.03 2.92 2.61 0.95 1.71 3.73
5.5 10.86 35.92 28.0 71.24 79.78 1.11 4.16 1.06 2.31 6.66 8.71 8.93 12.57 31.07 21.58
8.08 4.97 160.05 123.12 95.61 284.17 1.97 1.48 0.88 0.14 38.43 34.69 2.83 0.8 7.25 8.11
0.64 0.05 15.27 25.87 22.62 44.16 0.46 0.33 0.09 0.09 0.73 0.63 0.07 0.21 0.29 0.0
0.84 7.48 17.32 23.12 24.32 36.97 1.89 2.23 4.44 4.25 5.13 2.74 1.79 1.58 2.54 2.37
0.0 0.0 13.0 16.63 12.52 34.93 0.41 4.26 0.31 0.97 2.65 1.59 0.0 0.0 0.26 0.0
0.22 1.27 125.86 210.75 132.56 546.51 2.88 2.39 0.09 2.37 12.51 10.32 0.12 0.06 0.24 0.0
0.49 0.0 21.61 11.87 30.57 37.29 6.65 0.08 0.0 0.0 0.38 1.86 0.0 0.0 0.5 0.12
2.49 1.71 9.19 11.25 10.93 23.12 4.51 1.33 0.03 0.03 0.52 0.37 1.33 1.52 3.19 2.03
0.08 0.55 16.8 12.81 12.64 31.64 2.09 1.36 0.8 0.83 4.5 3.97 1.64 1.88 1.44 1.84
19.83 10.09 80.44 74.6 156.16 242.71 42.05 7.6 17.72 13.65 25.65 24.41 8.72 10.44 17.13 8.0
0.0 0.0 10.79 11.33 8.18 24.6 0.9 0.04 0.0 0.0 0.21 0.53 0.0 0.0 0.24 0.0
2.35 0.58 17.79 15.53 43.86 51.7 3.22 0.7 0.45 1.81 7.28 7.49 1.94 3.41 1.91 3.42
2.59 1.38 87.21 93.89 180.4 225.03 1.26 1.87 7.76 13.38 10.14 10.82 4.88 5.43 15.21 9.11
0.01 0.01 16.95 13.25 22.55 35.35 12.42 2.07 0.03 0.03 0.88 4.81 0.93 0.18 0.15 0.29
0.0 0.21 8.02 7.1 14.06 15.15 2.4 0.78 0.18 0.19 0.77 1.42 0.0 0.2 0.0 0.0
58.42 14.95 236.22 441.02 481.97 507.78 100.8 90.48 36.32 14.22 53.98 96.86 87.93 64.41 95.58 75.04
0.05 0.0 67.34 63.87 70.6 110.69 4.13 0.04 0.47 0.21 1.67 3.1 0.0 0.0 0.34 0.0
60.04 55.42 219.72 340.07 219.36 459.22 66.1 60.17 27.95 24.42 96.43 118.87 49.39 36.14 72.62 53.86
21.58 12.72 104.97 122.97 142.8 189.38 55.26 84.37 11.33 9.01 67.94 86.25 41.95 44.41 56.9 40.49
0.47 0.14 54.39 42.35 54.32 117.94 0.5 0.3 0.99 1.07 7.79 7.04 9.28 6.29 0.48 13.3
0.05 0.04 4.28 5.58 6.48 9.18 1.36 0.61 0.03 0.04 0.03 0.4 0.18 0.07 0.0 0.0
0.06 0.0 6.04 5.74 8.58 17.64 0.0 0.0 0.58 1.13 0.89 4.46 0.0 0.0 0.0 0.0
0.48 0.39 9.59 12.41 12.9 20.72 1.89 0.07 0.28 0.43 2.45 2.72 0.18 0.08 0.35 0.08
0.35 0.03 6.33 7.02 10.85 12.16 2.0 2.57 0.2 0.06 1.29 2.21 3.45 5.22 5.37 2.71
0.03 0.02 7.23 5.61 9.39 14.77 4.83 0.13 0.0 0.0 0.11 0.39 0.0 0.0 0.0 0.0
0.0 0.14 0.75 1.23 1.3 2.21 0.0 0.05 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
0.03 0.0 65.09 45.11 53.17 103.4 15.46 3.78 0.0 0.0 1.12 2.51 0.1 0.05 0.19 0.27
48.06 13.6 81.53 126.5 90.35 203.92 33.93 17.88 37.14 43.87 36.39 29.66 20.11 13.45 10.92 18.67
2.62 0.9 78.73 76.47 61.74 133.25 10.85 6.93 0.87 0.14 1.22 6.65 10.27 2.68 9.93 8.66
19.52 14.02 87.71 117.48 180.58 231.37 34.33 23.46 20.45 19.81 48.36 32.16 12.99 11.31 10.66 17.96
0.91 0.37 258.66 195.3 386.75 494.87 4.38 2.55 0.73 1.14 2.87 2.45 2.03 1.04 7.09 3.22
0.0 0.0 3.57 2.59 3.05 6.63 1.66 0.06 0.0 0.0 0.08 0.11 0.0 0.0 0.0 0.0
5.96 1.35 132.56 177.31 191.21 362.54 3.74 1.37 3.98 2.81 29.5 35.21 1.89 4.18 6.0 3.67
3.44 2.45 88.98 118.7 131.38 250.32 7.16 1.62 1.7 1.49 23.66 25.28 0.52 0.89 1.71 0.16
2.2 3.7 22.55 24.4 30.79 40.46 3.43 2.18 1.33 2.28 15.33 15.02 0.41 0.8 1.74 0.75
3.06 8.95 70.4 45.87 54.29 115.53 3.31 10.98 7.23 5.79 9.13 7.76 7.83 10.17 34.56 11.68
0.08 0.0 5.8 6.41 6.8 11.86 0.58 0.0 0.0 0.0 0.3 1.95 0.0 0.0 0.4 0.0
0.03 0.16 31.58 44.06 17.97 79.75 0.15 0.02 0.0 0.03 0.69 0.61 0.0 0.03 0.0 0.0
0.0 0.08 19.98 33.4 21.0 58.64 0.55 0.25 8.26 1.22 4.91 5.62 0.0 0.0 0.0 0.0
0.0 0.0 30.31 39.73 32.91 77.37 17.77 0.06 0.0 0.0 0.76 3.14 0.0 0.0 0.0 0.0
14.93 34.94 87.26 71.05 148.09 119.88 14.57 11.96 17.46 7.5 16.15 21.83 22.15 13.18 17.87 29.97
0.47 0.05 11.92 11.82 8.68 25.61 7.3 2.23 0.61 0.79 1.89 1.61 0.0 0.0 1.08 0.0
1.47 0.0 21.45 40.06 17.1 53.83 0.0 0.07 0.0 0.0 0.0 0.0 0.0 3.05 12.82 0.0
16.79 6.1 404.5 420.75 774.99 810.84 22.71 17.89 99.57 121.69 273.94 243.3 8.84 16.84 64.03 22.5
5.01 1.33 97.39 119.65 170.91 258.28 17.08 19.15 1.88 0.78 24.56 29.17 11.35 7.17 6.07 9.87
0.04 0.1 8.88 13.05 16.59 26.42 2.09 0.38 0.17 0.1 1.45 1.39 0.1 0.14 0.95 0.36
0.0 0.0 1.07 2.03 2.34 3.15 0.34 0.03 0.0 0.0 0.23 0.22 0.0 0.0 0.0 0.0
0.0 0.0 1.6 1.49 1.82 3.14 0.0 0.0 0.0 0.0 0.0 0.0 0.63 0.0 0.0 0.0
0.0 0.0 1.36 6.8 3.75 7.04 0.26 0.0 0.0 0.0 0.17 0.16 0.0 0.0 0.0 0.0
0.05 0.0 5.9 6.89 10.03 14.71 2.56 0.01 0.0 0.0 1.4 3.75 0.0 0.0 0.0 0.0
0.35 0.0 4.65 22.35 19.29 27.58 3.49 0.0 0.0 0.0 0.68 1.68 0.0 0.0 0.0 0.0
0.0 0.0 9.44 16.04 8.75 27.22 0.0 0.01 0.0 0.0 1.84 0.97 0.0 0.0 0.0 0.0
23.14 14.17 568.31 457.76 564.41 1068.29 100.4 85.97 5.36 4.09 47.14 129.68 45.59 56.56 132.74 93.07
1.6 1.55 110.48 106.54 150.54 209.33 7.2 3.21 5.66 10.18 32.66 26.61 2.33 5.46 5.16 2.81
4.59 1.13 84.53 72.52 160.61 156.8 6.33 28.34 21.25 13.06 44.25 33.48 141.12 103.43 49.06 73.35
0.0 0.05 5.17 16.24 10.82 22.57 0.26 0.0 0.16 0.31 0.49 0.45 0.0 0.0 0.17 0.0
0.0 0.14 2.31 1.75 3.12 5.88 1.43 0.05 0.0 0.0 0.05 0.35 0.0 0.0 0.75 0.0
0.02 0.0 0.96 0.05 0.69 1.55 0.0 0.22 0.0 0.0 0.0 0.0 0.55 0.39 0.55 0.64
1.11 0.02 37.73 45.88 38.54 85.72 0.25 0.0 0.0 0.04 0.77 0.89 0.44 0.16 3.45 1.05
0.32 0.4 1.06 1.22 1.58 1.96 0.16 0.46 0.0 0.04 0.13 0.16 1.26 0.74 0.21 0.29
0.62 0.97 3.1 4.1 9.69 9.96 2.74 1.42 0.9 0.24 2.02 2.51 11.53 13.64 11.66 20.93
0.0 0.0 66.24 55.21 25.89 128.84 0.16 0.1 0.13 0.13 0.82 2.17 0.0 0.0 0.0 1.35
0.0 0.05 52.42 39.62 35.51 101.49 2.9 2.22 4.97 1.06 5.85 4.6 0.14 0.0 0.0 0.31
0.0 0.08 2.81 2.81 5.84 6.06 1.88 1.39 0.07 0.45 1.03 0.59 3.85 2.17 0.0 1.99
4.33 7.66 115.68 107.06 122.12 224.28 6.1 2.38 1.26 1.7 9.84 19.17 34.85 79.86 74.72 93.56
0.04 0.0 13.3 7.03 5.32 24.05 0.16 0.42 0.33 0.83 1.25 0.93 0.0 0.0 0.0 0.0
5.45 3.4 27.98 28.95 37.6 61.91 0.3 0.7 0.53 0.55 1.68 2.02 6.95 11.22 8.45 14.12
0.23 0.04 5.5 7.84 7.76 12.06 2.19 1.17 0.46 0.22 0.84 0.95 2.64 1.39 1.04 2.33
2.54 0.51 118.22 177.46 85.35 341.07 28.51 3.65 1.9 4.53 40.32 40.07 5.87 4.33 82.51 4.56
29.1 26.63 129.75 152.35 205.73 212.22 55.15 33.5 7.75 11.48 44.24 50.77 124.59 114.34 83.3 141.07
0.0 0.0 29.89 29.85 38.44 64.82 0.41 0.3 2.97 0.41 0.32 3.74 0.0 0.0 0.0 0.0
0.24 0.18 0.77 0.85 1.34 1.94 0.14 0.09 0.19 0.1 0.15 0.0 0.24 0.51 0.48 0.22
0.0 0.0 25.57 20.32 13.88 42.62 7.55 0.02 0.0 0.0 0.58 5.51 0.0 0.0 0.85 0.0
0.69 0.0 8.82 5.74 21.84 30.41 0.86 0.19 0.0 0.74 2.31 1.43 0.0 0.81 14.66 0.0
0.65 2.09 16.61 13.34 11.02 32.01 3.22 1.18 1.24 0.08 2.71 1.94 2.88 1.22 0.49 3.59
1.58 1.41 5.45 10.73 14.0 19.79 0.65 0.63 0.23 0.3 0.24 0.06 0.0 0.14 0.0 0.0
40.1 15.03 54.85 71.34 37.0 129.48 16.56 4.65 5.6 11.65 22.57 16.47 6.74 6.99 7.39 8.75
0.0 0.0 3.76 4.23 3.07 6.39 0.11 0.04 0.0 0.0 0.0 0.13 0.0 0.0 0.63 0.0
7.15 27.12 86.25 70.64 124.28 177.26 21.87 11.56 0.33 1.7 49.12 46.42 2.45 6.77 3.2 1.87
0.0 4.29 27.4 21.12 21.24 63.29 2.08 0.19 0.29 1.08 11.05 7.64 0.0 0.14 2.85 0.0
0.0 0.0 0.41 1.23 0.9 1.86 0.0 0.0 0.08 0.0 0.0 0.08 0.0 0.0 0.0 0.0
1.51 4.12 164.18 129.82 256.66 333.21 7.64 2.25 6.75 8.79 62.58 58.58 12.44 11.74 33.69 33.19
0.85 1.76 6.33 7.48 4.5 12.62 0.85 0.91 1.36 0.66 3.73 2.74 0.0 0.0 0.0 0.0
0.0 0.05 4.98 3.75 4.06 7.23 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
18.29 10.13 80.63 123.96 199.71 286.09 52.16 41.66 0.56 1.17 54.54 54.95 9.66 10.14 5.94 16.26
0.0 0.0 12.26 14.75 6.21 21.26 0.28 0.0 0.0 0.0 4.44 3.43 0.0 0.0 0.0 0.0
2.59 3.3 51.64 58.05 68.59 107.0 16.33 5.55 3.45 1.97 16.12 13.06 3.24 4.6 14.62 3.08
0.0 0.0 18.85 10.2 20.19 38.33 3.73 0.42 0.0 0.0 0.55 1.74 0.0 0.0 0.0 0.0
0.94 4.91 45.21 34.33 86.89 102.44 23.53 12.87 0.17 0.09 2.63 9.28 5.83 7.45 4.96 3.59
1.85 4.08 152.61 118.95 152.46 254.38 2.65 2.85 2.31 6.86 32.09 33.33 5.29 3.59 13.07 6.89
19.95 9.11 25.24 33.09 37.29 45.84 19.68 14.9 20.55 18.6 21.58 13.82 10.54 7.15 10.36 9.19
0.0 0.0 6.38 6.67 22.58 24.88 1.16 0.11 0.0 0.0 0.0 0.0 0.0 0.17 0.24 0.0
43.78 23.01 324.24 351.26 260.69 850.42 24.96 21.04 21.65 30.8 135.71 104.64 11.41 8.01 20.62 15.2
1.04 0.0 4.87 3.71 9.11 10.59 2.34 0.02 0.0 0.0 0.17 0.42 0.0 0.0 0.0 0.0
0.0 0.57 12.44 9.05 18.51 27.52 7.24 0.01 0.0 0.0 0.11 1.76 0.0 0.0 0.0 0.0
18.97 4.36 45.75 61.57 95.3 87.03 18.15 11.23 5.31 8.11 30.4 25.82 6.69 5.96 16.33 8.42
6.81 0.32 27.71 30.46 25.11 38.65 6.77 15.01 0.99 1.74 14.37 16.96 24.59 14.99 23.31 21.71
0.89 3.39 13.13 16.67 30.04 27.83 6.85 3.76 0.37 0.29 11.07 14.29 6.53 7.55 11.5 6.29
2.21 2.34 80.09 83.09 151.45 140.57 13.31 6.05 17.29 17.13 40.43 41.76 1.38 1.22 0.3 2.11
0.04 0.0 6.23 4.75 12.32 14.85 2.45 0.24 0.49 0.0 1.55 2.53 0.6 1.12 56.98 0.27
15.26 0.22 58.24 69.3 140.23 168.29 26.84 32.29 0.0 0.17 6.38 30.29 47.58 36.24 52.2 45.33
191.84 59.85 1179.51 1365.98 1010.22 2161.28 69.52 261.15 0.29 3.5 248.8 474.31 414.86 187.32 1184.58 509.75

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)