Heatmap: Cluster_59 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-2.52 -5.76 1.82 1.05 2.34 1.18 - - - - -1.34 -1.12 -1.57 -1.66 -2.18 0.19
-4.47 -1.45 2.59 1.62 1.44 1.36 -2.91 -4.75 -2.11 -5.38 -3.34 -2.02 -3.65 -2.74 -2.58 -4.68
-4.16 - 2.51 1.37 1.35 1.72 -1.58 - - - -0.92 -2.61 - - -0.35 -
-4.3 - 2.36 1.61 1.42 1.67 -1.91 -3.0 -1.8 -0.94 -1.38 -2.81 - -2.6 - -
-2.13 - 2.21 1.58 2.12 1.6 -2.4 -5.56 - - -2.54 -1.93 -3.15 -5.24 - -
-4.06 -4.0 0.79 0.18 -0.17 0.24 -1.68 -1.95 -5.48 -4.12 -1.94 -1.53 1.27 1.68 1.05 1.0
-8.56 -6.17 2.33 1.74 1.57 2.06 -1.93 -5.69 -5.23 -4.39 -4.62 -3.88 - - - -
-3.45 - 2.35 1.69 1.29 1.97 - - - - -1.62 -0.99 - -4.39 -1.74 -4.42
-0.39 - 1.02 1.5 0.9 2.2 -0.66 - - - 0.72 -0.13 - - -0.43 -
-3.47 -7.08 1.53 0.04 1.1 0.25 -2.63 -3.09 - - - -4.65 1.67 1.09 0.85 0.26
-4.07 - 1.73 0.63 -1.47 1.97 -1.85 -2.16 - - - - 1.05 -0.37 - 1.78
- - 0.88 1.71 1.27 2.23 - - - - - -0.86 - -1.02 1.45 -
-3.59 -1.84 2.48 1.46 1.32 1.61 -6.12 -6.19 -6.73 -6.09 -2.87 -2.63 -4.3 -1.19 -0.15 -5.12
- -5.46 2.39 1.19 1.24 1.92 -0.89 -3.57 -4.73 -7.25 -0.3 -0.28 - - - -
- - 0.79 1.73 1.78 2.3 - - - -0.34 -0.7 -0.4 - -1.23 - -
-6.01 -2.51 2.4 1.35 2.12 1.31 -3.43 -5.15 -4.38 -5.17 -3.46 -1.92 -3.44 -3.09 -1.57 -3.78
- - 1.55 0.89 1.92 2.8 -2.95 - - - - -1.66 - - - -
-4.55 -5.36 2.61 1.45 2.0 1.19 -5.18 -8.14 -5.04 -2.57 -2.65 -1.7 - -8.83 -3.17 -
- -3.06 2.48 0.54 1.29 2.54 -1.79 -6.31 - - - -2.88 - - - -2.6
- - 2.38 1.81 1.21 2.28 - - - - -3.07 - - - - -
-3.86 -1.56 2.33 1.19 1.55 1.63 -1.29 -4.09 -3.54 -4.07 -3.16 -1.97 -2.71 -2.84 -0.5 -1.92
- - 2.3 1.81 1.38 2.22 -2.05 - - - - -4.0 - - - -
-6.22 -6.62 2.54 1.2 2.14 1.05 -3.76 -1.55 -5.33 -7.27 -1.95 -0.58 - - - -
-6.48 - 2.1 1.46 1.89 1.68 -5.28 -7.77 - - -1.24 0.61 - - -4.23 -
-1.79 -2.97 2.09 1.03 1.28 0.89 -0.69 -1.46 -4.03 -3.74 -2.57 -1.07 -0.39 -1.49 0.76 -1.26
-2.48 0.12 2.04 0.81 1.96 1.53 -1.49 -1.79 -5.21 - -2.12 -3.23 -2.37 -1.59 -0.98 -4.08
- - -0.39 -0.56 0.48 -1.01 -4.81 - - -1.51 - - 1.52 1.58 -0.26 2.48
-5.33 -6.5 2.26 1.32 0.73 2.34 -1.87 -1.58 -4.13 -4.56 -1.06 -0.65 -3.02 -5.7 - -
-4.43 -2.42 1.21 0.12 0.02 1.26 - -3.33 - - - -2.2 1.07 1.43 1.46 0.17
-2.49 -3.56 2.35 1.01 1.52 2.18 -2.34 -2.91 -5.61 -6.89 -1.24 -1.64 -5.53 -6.12 -4.08 -5.52
-2.26 -0.9 2.37 1.08 1.38 0.88 -3.7 -2.51 -2.89 -1.94 -3.31 -2.58 -0.92 -0.43 -0.73 -0.44
-4.34 -3.41 2.29 1.51 1.46 2.28 -5.0 -3.39 -10.25 -7.28 -2.1 -2.66 -9.91 - -6.93 -8.45
-6.59 -0.82 2.13 1.42 1.78 1.45 -0.37 -2.35 -1.93 -1.73 -1.85 -1.77 - -5.79 -4.21 -7.63
- - 2.09 1.94 0.41 2.71 - - - - - - - - - -
- - 2.35 1.17 1.75 1.81 -4.68 -3.27 - - -2.26 -1.37 - -3.2 -0.13 -
-6.61 - 2.35 1.5 2.35 1.46 -3.2 -7.89 - -7.19 -5.15 -3.56 - - - -
- - 0.16 -0.82 - 1.62 - - - - - - 2.06 1.23 0.72 1.62
-0.79 -1.73 2.52 1.07 1.69 1.25 -0.45 -2.26 -7.45 -6.93 -2.35 -1.0 -7.83 -10.93 - -7.37
-4.39 - 2.44 0.93 1.23 2.12 -3.28 -5.68 -0.15 -4.57 -1.58 -1.59 - - -2.31 -
- - 2.55 1.01 1.59 2.13 -5.4 - - - -2.45 -1.82 - -1.91 - -
-4.87 -6.56 2.3 1.74 1.73 1.88 -3.27 -7.05 -5.13 -6.65 -2.37 -1.77 - -5.9 - -6.51
-5.62 -4.92 2.47 1.25 1.45 2.0 -8.17 -6.0 -7.52 - -3.97 -2.89 -2.17 -7.27 -1.45 -1.13
-2.33 -2.36 2.31 1.46 1.98 1.23 -3.35 -5.25 -4.28 -6.22 -2.19 -0.31 - -5.04 -1.38 -
- -1.69 1.75 1.55 1.72 2.04 - -1.02 - - - - - - - 0.6
-4.96 -5.57 2.26 1.76 1.68 1.42 -4.01 -4.15 - - -2.25 -1.67 -3.21 -5.89 0.09 -4.92
-4.42 -0.32 2.13 0.82 1.78 2.12 -2.95 -3.56 -2.44 -3.96 -3.93 -3.03 - - -1.71 -1.81
-3.41 - 2.58 0.33 1.62 1.94 -2.99 -6.53 -7.31 -5.25 -0.86 -0.05 - -5.47 - -4.5
-4.74 -0.48 2.05 0.72 1.94 1.98 -7.2 -3.11 - -5.89 -1.85 -1.0 -3.61 -4.71 -3.64 -0.83
-6.25 -7.4 2.31 1.31 2.2 1.91 -6.47 -8.13 -3.55 -3.59 -7.93 -6.61 -7.96 - - -8.08
-5.38 -10.14 2.08 1.4 0.87 2.06 -3.75 -5.49 -7.44 -3.62 0.61 0.48 - -7.19 -5.95 -
-6.42 -6.88 2.43 1.57 2.08 1.39 -3.83 -3.26 -5.73 -6.35 -2.05 -1.68 - -8.5 - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.