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Heatmap: Cluster_187 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.23 0.77 -1.05 -2.17 -0.84 -0.49 -1.44 -2.19 -2.88 -3.74 -3.16 -2.56 1.28 1.63 1.45 0.85
1.45 2.15 0.38 -0.46 0.7 0.47 -1.06 -1.5 -3.1 -6.4 -2.76 -1.24 -1.09 -0.89 -0.59 -0.79
1.16 1.39 -0.59 -0.79 -0.39 -0.21 -0.82 -1.75 -4.53 -5.79 -2.51 -2.34 0.56 0.87 1.18 0.5
0.87 2.57 - - -0.19 - - - - - - - - 0.5 2.57 -
0.89 2.62 0.54 0.86 1.2 -0.83 -2.23 -3.16 -3.06 -4.01 -3.37 -3.48 -2.79 -1.89 -0.82 -2.33
1.0 1.91 - - -0.33 0.84 - 0.33 - - - - 0.45 0.35 - 1.91
-0.44 0.64 -2.19 -1.86 -0.52 -0.78 -1.71 -1.72 -4.56 -4.5 -2.15 -2.16 1.45 1.76 0.93 1.47
-0.18 1.92 -2.59 - - 0.35 - -3.33 -0.38 - - -1.97 0.3 1.2 1.27 1.5
-0.64 0.19 -3.15 -2.24 -1.9 -1.31 -1.95 -1.29 -4.17 -4.11 -5.07 -3.18 1.5 2.47 0.47 1.34
0.53 1.09 -0.52 -1.23 -0.43 -0.03 0.09 -0.63 -1.88 -3.33 -2.4 -1.32 0.62 0.94 1.13 0.36
0.53 1.04 -0.56 -1.43 -0.13 -0.18 -0.09 -1.24 -0.96 -1.86 -1.41 -1.01 0.28 1.05 1.02 0.4
0.62 0.59 -1.46 -3.59 -0.51 -0.76 -0.81 -2.15 -4.64 -5.59 -3.23 -4.07 1.49 1.28 1.47 1.13
1.42 1.76 -0.58 -1.1 -0.3 -0.4 -1.84 -0.55 -2.6 -4.13 - -4.2 0.48 0.87 0.14 0.74
2.12 2.34 0.1 -0.43 0.48 0.14 -0.27 -0.17 -4.7 -9.29 -3.64 -1.52 -4.24 -5.56 - -5.85
1.52 1.72 0.53 -0.23 0.15 -0.59 0.2 -1.06 -1.18 -1.8 -0.43 -0.2 -1.09 -0.45 -2.08 -1.5
-0.58 0.23 -1.18 -1.89 -0.77 -1.15 -0.81 -1.53 -2.23 -2.33 -2.47 -1.88 1.47 1.59 1.39 1.14
0.27 1.0 -2.52 -3.19 -1.15 -1.17 -2.15 -1.65 - - -7.18 -4.96 1.39 1.24 1.07 1.98
-0.85 0.13 -1.84 -1.74 -0.98 -0.99 -2.07 -3.06 -2.27 -3.14 -3.72 -2.58 1.1 1.89 1.84 1.26
1.49 3.14 - - - -0.01 - - -0.98 - - -0.99 - 0.24 - 0.22
-2.31 -0.55 -2.51 -2.97 -3.05 -2.93 -4.09 -2.93 -3.57 -6.31 - -4.8 1.91 2.62 0.78 1.37
-0.42 0.31 -2.7 -2.78 -2.49 -1.65 -2.42 -1.04 - -7.05 -5.02 -2.95 1.65 1.67 1.22 1.89
1.02 1.2 -0.19 0.03 0.02 0.4 -0.54 -1.63 0.09 -0.3 -0.03 0.04 -0.53 -1.11 -0.65 -0.38
0.26 0.4 -1.33 -2.98 -0.93 -1.05 -1.4 -2.08 -3.46 -3.62 -3.09 -1.89 1.03 1.49 2.09 0.74
-0.65 0.34 -2.69 -3.33 -1.57 -1.07 -1.28 -0.62 - -8.29 -4.01 -2.74 1.53 2.01 -0.25 1.99
-8.3 2.29 -6.08 -9.21 0.39 0.46 1.07 0.66 - - - - 0.44 0.33 -0.17 0.27
1.69 2.28 -0.43 -0.71 -0.4 1.36 -3.63 -3.17 -2.4 -1.56 -0.27 0.23 -2.53 -2.78 - -2.39
-1.22 -0.35 -3.16 -3.76 -2.71 -3.03 -3.89 -4.91 -5.7 -6.66 -6.58 -3.53 1.75 1.88 2.21 1.27
2.18 3.04 - 0.13 - - - - - - - - - - 1.1 -
0.45 0.83 -1.76 -3.38 -2.62 -1.47 -2.07 -2.34 -2.78 -1.99 -2.23 -3.36 1.46 2.02 0.27 1.49
0.44 0.67 -1.73 -2.12 -0.77 -1.48 -1.27 -1.12 -1.04 -1.92 -2.53 -1.74 1.37 1.35 1.52 0.58
-1.24 -0.56 -4.8 -6.38 -4.67 -1.38 -5.42 -2.11 - - - -8.16 1.92 2.08 1.71 1.53
0.05 2.45 - - 0.71 0.21 -0.48 -1.04 0.33 -0.26 -1.21 -0.73 -0.24 -1.82 -2.07 -0.0
1.74 2.65 0.28 0.03 1.35 0.47 -3.97 -2.5 - - - - - - - -
-0.1 0.43 -1.71 -1.91 -0.3 -0.73 -1.4 -0.94 -2.04 -2.51 -2.23 -2.65 1.7 1.43 0.78 1.25
-0.16 0.58 -1.76 -3.25 -1.3 -0.98 -3.53 -2.55 -2.21 -3.08 -3.03 -2.99 1.68 1.51 1.43 1.44
2.19 2.23 0.52 -0.72 0.45 -0.06 -4.42 -4.96 -5.32 -4.07 -1.81 -1.47 -2.44 -2.52 -0.04 -2.22
0.32 0.56 -1.09 -2.16 -0.71 -1.18 -1.73 -1.18 -4.66 -5.18 -4.15 -2.08 1.89 1.25 0.77 1.39
0.03 0.24 -1.24 -2.23 -0.46 -1.08 -1.0 -1.7 -2.98 -2.92 -1.51 -1.99 0.72 1.39 2.09 0.83
0.74 1.73 - - - - - - - - - - 1.78 -0.31 2.76 -
-0.45 1.67 -0.78 - 0.56 -2.39 -3.04 -2.46 -0.76 0.3 - -0.77 -0.46 1.25 - 2.0
0.8 1.25 -0.17 -1.16 -0.63 -1.12 -0.29 -4.73 -2.51 - -1.41 -0.93 -0.16 0.64 1.39 1.28
0.71 1.33 0.27 -0.0 0.28 0.01 0.31 -0.62 -0.43 -1.04 -0.86 -0.13 -0.79 -0.39 -0.24 -0.62
-1.79 -0.8 -3.72 -4.65 -2.84 -2.65 -7.03 -6.29 - - - -4.08 1.76 2.0 2.11 1.56
0.17 1.23 -0.75 -1.7 -0.29 -0.17 -0.24 -1.44 -2.24 -2.8 -2.9 -1.84 0.92 1.35 1.34 -0.04
0.64 1.09 -0.26 -0.35 -0.13 0.16 -0.85 -1.7 -1.49 -1.96 -2.2 -2.03 0.7 0.97 0.97 0.24
0.25 1.26 - -4.99 0.16 -1.54 -0.37 0.46 - - - - 1.51 0.67 0.53 1.52
0.95 1.52 0.19 -1.88 0.49 0.6 -1.0 0.46 -4.13 -3.85 -3.36 -4.88 0.36 0.56 -0.55 0.37
-0.44 1.85 - - -1.32 - -0.53 -4.15 - - - - 0.47 1.95 1.44 1.34
0.76 1.51 -1.93 -2.69 -1.07 -0.66 -3.19 -1.71 - - -2.83 -3.26 1.2 1.41 1.29 0.9
1.36 1.33 -0.49 -1.11 -0.4 -0.61 -0.18 -1.02 -0.93 -1.32 -1.99 -1.29 0.22 0.53 0.7 0.2
1.33 1.45 -0.43 -0.8 0.68 0.53 -0.01 -0.81 -0.29 -2.54 -1.13 -1.28 -0.37 -0.59 0.08 -1.11
0.44 2.14 -2.84 - -0.08 -1.98 0.77 1.56 - - - - 0.1 -0.09 0.13 0.18
0.02 -0.05 -1.91 -2.19 -1.4 -1.55 -1.76 -2.0 -3.12 - -5.32 -5.44 1.51 1.94 1.58 1.29
2.37 2.85 -0.09 -0.93 -0.48 -0.3 - -6.94 -4.05 -1.46 -2.3 - - - - -
0.93 1.66 -0.49 -0.7 -0.14 0.3 -0.28 -1.54 -2.51 -2.42 -1.43 -0.69 0.39 -0.19 -0.55 1.05
1.46 1.72 -0.02 -0.81 -0.47 -1.7 -1.55 -2.13 -3.81 -3.69 -3.61 -3.76 0.53 0.85 -0.05 1.19
1.07 1.44 0.2 -0.61 -2.54 -1.97 -1.61 -2.45 - - - - 1.56 1.08 0.95 0.53
0.51 1.01 -3.84 -2.51 -0.13 -0.87 -1.51 -0.4 -2.26 - -2.17 - 1.53 0.88 -0.96 2.03

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.