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Heatmap: Cluster_95 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-2.45 -2.46 0.66 -1.92 1.01 1.33 0.21 -2.58 - - -1.58 0.4 0.47 0.57 0.96 0.54
-0.4 0.54 0.9 1.11 1.25 2.07 -1.2 -3.22 -6.22 -4.81 -2.16 -1.5 -1.58 -1.5 -0.41 -0.73
-6.67 -4.72 -3.28 -4.6 -2.31 -2.68 -4.79 -6.22 - - -6.96 - 1.98 2.05 1.13 2.36
-4.6 0.79 0.85 1.03 0.52 1.63 0.8 0.41 -5.58 -8.85 -0.66 0.65 -2.63 -2.53 -4.27 -2.37
0.23 0.11 1.31 0.23 1.01 1.19 - - - -2.03 - - 0.79 1.11 0.18 -0.91
-1.41 -0.18 0.37 -1.42 1.11 1.31 -2.37 -4.18 -3.22 -3.97 -3.93 -1.72 -1.68 -1.55 2.63 -0.35
0.67 - -0.87 -0.54 1.58 1.9 - - - - - 1.27 - - 2.02 -
-1.92 0.47 1.06 0.57 1.74 1.49 0.16 -0.04 -2.12 -3.2 -0.03 0.15 -6.56 -5.65 -4.58 -4.36
-0.01 - 1.25 1.56 2.74 0.54 -4.59 -0.21 - - - -1.32 -2.01 - - -
0.12 -1.06 -0.03 -0.69 0.76 1.44 -1.7 -1.38 - - -2.93 -1.45 1.1 1.59 0.85 -1.83
-0.72 -0.24 -0.19 -0.3 0.53 0.29 -1.03 -1.44 -2.56 -3.22 -2.94 -2.66 0.76 1.43 1.36 0.87
-0.13 0.07 0.99 1.11 1.08 1.68 -2.04 -2.61 - - -2.99 -4.1 -2.78 0.45 0.19 0.42
-3.83 0.23 1.4 1.06 1.45 1.66 -2.4 -4.28 -2.2 -2.62 -0.59 -0.09 -1.5 -1.36 -0.58 -1.0
0.32 0.25 0.82 0.99 1.27 0.58 -0.65 -1.5 -1.09 -0.65 0.17 0.08 -1.06 -1.64 -1.32 -1.26
-2.88 0.82 1.23 1.24 1.67 1.69 -1.58 -0.38 -5.93 -7.37 -1.27 -1.57 -1.66 -1.97 -1.95 -1.8
-3.9 -2.34 -2.36 -3.41 -2.2 -2.51 -3.63 -3.2 -5.61 -7.15 -6.05 -6.18 2.13 1.85 1.58 1.93
-5.72 0.54 1.78 1.58 1.65 1.25 -0.91 -0.25 -2.39 -4.41 -1.63 -2.36 -4.14 -1.96 -3.33 -4.85
-1.83 -2.46 -2.3 -2.49 -1.26 -0.83 -4.29 -3.74 -3.49 -4.07 -4.45 -3.44 1.78 2.29 1.57 1.3
- 0.53 1.7 1.75 2.37 1.24 -3.27 - -5.94 - -5.84 -3.14 - - -2.62 -
-1.16 0.23 -0.19 -0.01 0.12 0.57 -1.2 -2.2 -1.87 -2.4 -3.36 -1.29 0.18 1.76 1.29 0.43
0.87 0.64 0.41 0.59 0.74 1.32 -0.84 0.53 -1.34 -1.03 -0.55 -0.7 -1.61 -2.92 -1.44 -0.73
-2.22 -7.38 -0.81 -2.51 -0.77 -0.33 -2.78 -4.32 - - - -4.28 0.07 2.91 1.98 -0.19
-2.52 1.33 1.12 0.59 1.56 2.07 -1.96 -2.05 -3.29 -3.65 -0.55 -0.33 -3.95 -3.96 -2.98 -4.24
-3.84 1.63 1.54 1.02 1.39 1.86 -3.11 -1.77 -1.43 -3.38 -1.34 -2.45 - -2.2 - -
-4.67 1.0 1.4 0.84 1.38 2.62 -5.15 -7.44 -6.27 -7.15 -3.49 -3.33 -4.46 -3.26 -2.27 -2.38
-9.15 1.32 0.21 0.26 1.23 2.12 0.26 -0.06 -4.86 - -0.43 0.55 -7.36 -4.76 -5.39 -
-3.09 0.76 1.75 1.28 1.41 1.72 -1.26 -3.17 -2.96 -3.63 -4.0 -2.42 -2.14 -1.07 -1.4 -1.38
-0.73 0.04 0.31 0.49 0.57 0.72 -0.79 -1.24 -4.93 -7.87 -1.86 -1.34 0.81 0.35 1.02 0.88
0.52 - -0.23 -1.48 0.63 1.33 - -3.48 - - - -1.24 2.1 2.17 - -
-3.08 1.35 1.29 0.49 1.67 1.16 0.28 0.8 -7.78 -8.72 -2.07 -1.29 -3.52 -2.26 -4.13 -3.23
- - 1.33 1.25 2.26 2.07 -1.9 - - - 0.88 - - - - -
- - 1.42 1.23 2.7 2.16 - - - - - - - - - -
-2.83 0.73 0.63 0.38 2.33 2.27 - -2.31 - - -1.26 - - - - -0.17
-1.62 0.22 0.44 0.3 0.8 0.53 0.19 -0.37 - - - - 0.95 1.37 -0.88 0.82
-1.07 0.09 1.28 1.26 1.39 1.42 -0.35 -1.49 -7.57 -7.51 -2.41 -1.28 -0.7 -0.72 -0.47 -0.63
-3.97 -0.05 -0.71 -1.36 -0.01 -0.73 -1.71 -1.64 -1.82 - -3.32 -0.84 2.12 1.17 -1.16 1.92
-0.25 0.27 0.9 0.93 1.13 1.04 -0.76 -1.37 -1.37 -1.41 -0.59 -0.5 -0.79 -0.81 -0.2 -0.3
-1.34 0.37 1.02 0.92 1.39 1.28 -1.09 -1.59 -2.13 -2.45 -1.57 -1.94 -1.48 -0.44 0.4 0.15
0.49 0.36 0.83 0.72 1.33 0.66 -3.42 -2.85 -2.03 -1.47 -0.33 -0.76 -0.18 -1.32 0.04 0.35
-0.16 0.97 1.46 0.98 1.14 1.88 -2.18 -3.03 -3.4 -4.38 -0.62 -0.54 -5.2 -5.48 -0.83 -3.51
- 0.95 0.09 0.7 1.47 0.34 -2.91 -1.34 - - -1.51 -0.62 - 0.16 2.23 -
-5.17 1.3 0.7 1.05 1.84 2.37 -1.54 -5.19 -7.53 - -2.08 -2.5 -6.18 -4.96 -2.21 -
-1.19 0.21 0.51 0.42 0.89 0.4 -0.74 -1.35 -0.77 -1.44 -1.19 -1.4 0.57 0.68 0.3 0.48
- 1.39 1.21 1.54 1.57 1.82 -1.34 - - - - - - - 0.35 -
-0.59 0.43 0.76 1.14 0.8 1.2 -0.28 -1.33 -0.76 -1.02 -0.81 -0.51 -0.72 -0.85 -0.55 -0.67
-0.96 -0.89 -0.95 -0.75 -0.28 -0.28 -1.91 -1.24 -2.92 -2.53 -2.61 -2.49 1.8 1.29 1.01 1.55
0.03 0.17 0.29 0.05 0.78 0.51 -0.38 -1.14 -1.74 -1.67 -0.84 -0.73 0.29 0.29 0.78 0.37
-1.25 1.48 0.05 0.12 1.69 2.13 -0.97 -3.46 -1.71 -3.6 -0.55 -0.62 -2.65 -1.25 -4.67 -2.96
-5.97 1.39 0.6 0.72 1.85 1.65 0.07 -0.81 -3.45 -4.33 -1.45 -0.17 -3.58 -3.16 -2.67 -3.46
-1.34 -1.28 0.31 0.12 1.43 0.62 -1.52 -2.44 -4.19 -3.91 -3.35 -2.7 1.04 1.15 1.05 0.47
-4.96 -2.37 -2.38 -2.61 -2.28 -1.75 -5.65 -5.81 -5.34 -6.87 -5.24 -3.47 1.82 1.82 2.28 1.49
-1.89 -1.56 -1.44 -1.64 -0.9 -0.87 -3.59 -2.85 -2.13 -2.82 -1.84 -1.77 1.05 1.39 2.3 1.5
- 0.76 1.11 0.43 1.75 1.91 -0.36 -0.19 - - -3.56 -2.08 -1.29 -1.57 -1.31 -0.86
-2.85 0.88 0.25 -0.23 0.68 0.35 -6.32 -4.56 - - - -2.69 1.55 -1.13 2.09 0.31
-2.97 0.13 1.33 0.83 1.27 1.33 -3.98 -3.91 -2.85 -3.93 -3.41 -3.15 -0.03 0.79 0.16 0.25
-6.63 0.77 1.58 1.51 2.56 0.45 -1.04 -6.65 - - -2.03 -1.63 - - -2.91 -
-1.23 -0.11 0.25 -0.43 0.85 1.4 -1.01 -2.09 -2.58 -2.49 -1.85 -1.02 0.8 1.31 -0.03 0.31
0.09 -0.94 0.16 -0.45 1.06 0.53 -2.35 -2.5 -2.32 -1.84 -2.49 -1.74 0.6 1.37 1.1 0.55
- -1.48 1.29 -0.54 1.75 2.15 - - 0.44 -0.5 -0.2 0.81 - - - -
-2.61 -1.46 -3.86 -2.35 -1.26 -1.25 -7.53 -3.62 - - - -4.7 1.49 2.28 1.83 1.6
-0.29 0.09 0.01 0.54 0.67 1.01 -0.63 -1.54 -1.38 -1.2 -0.06 -0.69 0.37 0.07 0.24 0.2
-3.08 -0.98 -1.49 -2.09 -1.51 -0.86 -3.67 -3.99 -7.04 -4.99 -6.95 -4.73 1.43 2.11 1.76 1.7
-4.27 - 1.88 1.48 2.08 2.05 -1.79 -3.78 - - - -1.28 - - - -1.65
-1.2 0.15 0.8 0.48 1.61 1.57 -0.77 -1.71 -0.73 -0.9 -0.17 -1.13 -0.72 -1.19 -2.38 -0.56
-2.9 -3.4 1.52 0.31 2.08 2.14 -2.28 -2.26 -1.51 -2.77 -2.74 -2.85 -0.92 - - 0.37
-5.91 1.21 1.18 0.74 2.0 1.85 -0.97 0.37 -6.52 - -3.84 -5.53 - - -3.21 -2.99
-4.69 -4.81 -0.12 -1.41 -0.28 -0.31 -5.71 -4.94 -5.45 - -5.36 -5.46 1.16 2.13 1.76 1.52
-1.58 -2.22 -1.45 -1.46 -0.58 -0.57 -4.9 -3.01 -4.58 - -3.89 -3.27 1.85 2.14 1.18 1.44
-1.18 -1.18 -1.06 -1.04 0.72 0.75 -2.45 -1.92 -3.45 -3.63 -2.55 -1.58 -0.28 1.36 2.23 0.69
-1.04 -0.24 0.36 0.32 0.54 0.14 -0.83 -1.42 -1.39 -2.09 -1.41 -1.16 0.55 1.12 0.93 0.73
-0.5 0.49 0.68 0.81 1.17 0.84 -1.43 -1.96 -1.32 -2.04 -0.77 -0.99 0.14 -0.21 0.21 0.01
-0.74 -1.37 -1.6 -0.82 -0.33 0.42 -2.23 -2.44 -6.2 -5.14 -3.11 -2.21 1.4 1.75 1.37 1.38
-1.71 -1.63 -1.35 -2.06 -0.48 -0.42 -4.89 -2.51 -4.59 -5.54 -4.5 -4.61 1.92 1.85 0.99 1.83
-6.02 0.4 1.86 2.0 1.92 1.45 - -1.97 - - - - - -1.92 - -
-1.79 -0.66 -0.04 -0.93 0.24 0.45 -2.13 -1.98 - -9.07 -4.95 -3.5 1.7 1.37 0.99 1.39
-1.33 -0.15 -0.5 0.31 0.52 0.48 -1.68 -3.68 -6.22 -5.16 -2.8 -1.06 -0.07 0.52 2.62 -1.68
-0.51 -0.37 -0.65 -0.89 0.08 0.09 -1.15 -1.24 -2.55 -3.24 -1.86 -1.72 1.22 1.49 1.19 1.06
-9.27 1.26 0.28 1.51 1.68 2.36 -0.1 -5.84 - - -4.81 -2.79 -5.57 -6.66 -5.59 -5.1
-3.24 0.93 0.4 1.05 1.72 0.52 -0.56 1.03 - - -0.46 0.75 - - - -0.42
-1.45 -0.63 -1.02 -1.5 -0.54 -0.16 -2.34 -2.68 -2.77 -3.04 -3.42 -1.74 1.44 1.69 1.32 1.64
-1.87 -0.68 -2.65 -2.36 -0.77 0.5 -3.45 -4.08 -3.08 -4.86 -3.45 -2.89 1.43 1.68 1.43 1.86
-0.3 0.12 0.35 1.8 1.78 1.48 -2.02 - - - - - -0.44 - 0.54 -0.56
- 1.03 1.04 0.74 2.45 2.11 - -8.18 - - -3.23 - -2.6 - - -2.72
-2.08 0.79 1.88 0.83 1.41 0.94 -4.98 1.21 - -3.69 -2.65 -2.76 -2.4 -0.91 -1.42 -2.48

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.