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Heatmap: Cluster_22 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-7.07 -4.65 -1.52 -4.94 -2.14 -2.36 -0.09 -1.49 - - -6.61 -3.54 2.46 1.18 0.01 2.32
- -1.52 0.17 0.43 0.26 0.39 2.63 0.07 -0.8 -1.38 -0.71 -0.16 - -0.57 - -1.82
-0.57 0.3 -0.03 0.1 -0.28 -0.86 1.35 0.45 -0.63 0.09 0.15 0.11 -0.35 -1.52 -1.19 0.36
0.13 0.51 -0.58 -0.46 -0.36 -0.08 0.83 0.14 0.27 -0.39 -0.65 -0.46 -0.04 -0.1 -0.21 0.46
- - -1.98 -1.64 - - 0.53 1.19 - - - - 1.67 1.43 0.96 1.95
- - 0.83 - - - 0.15 - - - - - - - 3.71 -
-0.68 1.48 -0.43 -1.74 0.36 -1.12 2.51 1.19 -2.87 -3.4 -2.38 -1.7 -2.59 -3.0 -1.0 -1.7
-0.95 1.08 -0.15 -2.32 0.51 -1.32 2.61 1.52 -2.58 -4.09 -1.9 -2.43 -2.19 -2.82 -2.53 -1.96
-0.61 0.18 -0.68 -0.94 -2.14 -0.98 0.7 0.36 - - -2.6 -1.7 1.23 1.36 0.62 1.33
-3.09 -5.91 2.1 0.13 -0.02 0.05 2.73 0.58 -5.3 -3.66 - -6.31 -3.98 - - -2.79
-0.09 1.29 - -2.25 - -2.62 1.87 0.95 -1.0 - -1.91 -2.01 - -0.19 1.3 1.2
- - 1.1 0.23 -0.97 0.17 1.04 1.78 0.54 -0.35 -0.43 0.07 -0.01 -4.81 - -1.03
0.45 -0.54 -0.49 - 0.22 0.49 1.93 0.08 - - - - 1.42 1.64 - -
-0.6 -2.01 0.71 1.0 0.18 0.26 1.15 -1.25 -0.17 0.17 -0.63 -0.53 0.07 -0.14 -1.61 -0.26
- - 0.21 1.13 -0.67 - 2.78 - - - - -0.21 - - 2.09 -
-1.83 -0.61 0.08 0.35 -2.55 -2.53 1.11 0.86 -5.26 -4.67 -1.43 -0.61 1.11 0.96 0.31 0.98
-5.33 - -2.39 -2.91 -5.43 -4.01 -0.94 -1.2 - -3.94 - -3.42 0.71 0.88 3.03 1.48
-5.81 - 1.36 0.94 -0.2 -0.07 2.3 2.08 - - -3.37 -1.16 - - - -
- - 0.63 0.25 - - 1.6 0.02 - - -1.55 - -1.38 -0.47 2.41 1.31
-0.64 -1.96 -0.5 -0.7 -1.07 -0.57 0.75 1.09 -2.99 -3.84 -2.56 -4.91 1.42 0.9 0.46 1.32
-5.12 - 0.87 0.8 0.13 0.0 2.04 2.17 -2.04 -2.2 -0.59 -0.97 - -7.43 -5.36 -4.88
-0.76 -1.06 -0.47 -0.11 -0.97 -0.67 0.83 0.36 -0.46 -0.26 -0.19 -0.41 0.87 0.06 0.09 0.97
-2.08 1.3 -1.33 -1.65 -0.32 -0.05 2.4 1.93 -1.72 -1.86 -2.47 -1.86 -2.56 -2.45 -2.58 -2.54
-3.12 - 0.27 0.83 -0.18 0.92 2.31 2.1 -2.48 -3.0 -2.97 - -2.72 - - -1.85
-4.04 -5.43 -0.87 -2.68 -2.52 - 1.65 0.02 -4.99 -4.94 -1.72 -1.83 0.8 2.64 -1.17 0.85
-4.38 0.53 1.74 1.34 -0.86 -0.31 2.69 -1.69 -3.01 -2.43 - -4.82 - - -3.5 -3.6
-1.08 -0.21 -1.3 -1.58 -0.12 -0.55 0.83 0.07 -0.37 -0.46 -0.9 -0.27 0.95 0.3 0.6 0.96
-5.71 - - - - - -2.96 -3.68 - -4.22 -4.19 - 3.12 2.0 0.71 0.44
- - 1.83 0.16 - -2.21 3.11 0.89 - - - -0.61 - - - -
- -1.3 1.43 1.21 -0.13 -0.58 2.74 -0.74 -2.86 -2.8 -0.92 -0.61 - -1.94 - -
-4.67 -5.81 1.21 1.02 -7.13 -7.3 3.04 -0.23 -0.37 -1.7 0.14 -1.72 -6.35 - - -5.42
-0.39 -0.25 -0.66 -0.98 -0.74 -0.7 0.64 0.29 -1.6 -1.6 -0.67 -0.85 1.18 0.76 0.29 1.17
-0.51 -0.88 -0.4 -0.03 -0.75 -0.53 0.86 0.31 -0.35 -0.46 0.03 -0.9 1.08 0.32 -0.6 0.68
-1.09 0.21 -0.17 0.22 -0.44 0.12 1.61 0.09 0.29 0.01 0.19 -0.26 -0.56 -1.13 -1.54 -0.53
- 2.33 - - - - 3.22 0.72 - - - - - - - -
-4.52 - -2.3 -0.74 -1.12 -0.95 1.04 0.09 - - - - 1.61 1.19 0.19 2.2
-2.59 -3.39 -1.2 - -1.9 -2.11 -0.21 -1.06 - - -5.05 -3.57 1.44 1.93 1.55 1.96
0.08 0.8 -0.89 -0.29 -0.18 -0.82 1.16 0.46 -0.1 -0.49 -1.14 -1.55 0.23 0.35 -0.63 0.32
-0.82 - 2.43 - 1.43 - 1.89 - - - - - - - 1.86 -
-3.03 - 2.19 - -0.95 0.73 2.87 0.13 - - - -0.45 - - - -
-2.71 0.11 0.87 -2.12 -0.74 -1.9 2.67 0.89 -2.86 -2.81 -0.77 -0.29 0.04 - - -0.08
-2.14 -0.83 -0.25 0.3 -0.5 -0.8 1.72 0.15 -0.14 -1.5 -0.32 -0.72 -0.31 -0.06 1.17 -0.39
-4.02 -0.97 - -0.9 - - -0.59 -0.11 - - - - 2.26 1.58 - 2.46
-1.85 -0.92 -0.43 -0.96 -0.41 -0.92 1.0 0.43 -5.17 - -2.08 -1.86 1.58 0.76 0.72 1.29
-0.15 0.44 0.07 - -0.82 -0.94 2.06 -0.17 - - -0.2 - 1.71 -0.71 - 0.85
-5.24 - -0.75 -0.49 -4.84 -4.85 1.42 1.05 - - - - 2.24 0.87 0.51 0.89
- - -0.57 -0.24 - - 1.1 1.37 - - - - 1.41 0.73 0.16 2.12
-3.48 -7.29 -3.23 -3.18 -4.11 -4.91 -2.01 -1.72 - - - -7.12 1.65 2.45 0.84 2.22
-2.4 -0.21 -0.92 -0.92 -3.34 -2.2 0.9 -0.3 -2.01 -2.87 -0.43 -0.08 0.99 1.24 1.36 0.94
-2.05 - -0.42 0.1 -3.31 -1.85 2.46 0.74 - -2.74 0.89 0.0 0.07 -1.62 0.46 -0.64
-1.88 0.63 -0.19 0.24 -1.26 -1.55 1.92 1.0 -1.08 -1.24 -0.33 -0.88 0.13 -0.21 -1.01 -0.13
-1.9 -1.45 0.51 -0.01 -2.63 -2.41 2.85 1.54 0.15 -3.33 -1.81 -3.12 -1.52 -2.62 -4.87 -1.65
- - 2.17 1.52 -0.79 -1.72 2.94 -5.52 - - - -4.56 - - - -
-0.64 -3.99 -0.74 -1.89 -5.15 -6.91 0.4 0.99 - - -3.89 -3.5 1.83 1.5 1.06 1.29
- - 0.55 0.77 - - 2.75 2.52 - - - - -2.25 -4.35 - -3.37
- -5.99 -0.63 -0.97 -2.05 -2.24 0.95 0.5 - - - - 1.51 1.37 1.43 1.54
-4.65 -2.42 -2.19 - -1.66 - -0.87 -1.7 - - - -2.19 2.21 1.94 1.42 1.59
-2.14 0.26 -2.31 -1.43 -1.54 -1.81 1.53 0.88 -3.66 -2.47 -1.67 -2.19 1.4 1.33 -0.19 0.86
-3.37 -3.62 -0.35 -0.02 -1.59 -2.05 1.12 0.15 -1.8 -2.17 -1.5 -2.26 1.87 0.83 0.2 1.35
-4.03 - -0.33 0.04 -3.72 -4.48 1.56 -0.62 -5.88 - - - 1.56 0.95 0.15 2.13
-1.22 2.02 - - - - 2.84 2.13 - - - - - - - -
- - -2.16 -2.24 - - 1.1 -0.34 - - - - 2.04 1.39 0.05 2.28
- - -3.73 -4.39 -3.6 - -1.4 -1.18 - - - - 2.14 2.09 1.48 1.82
- - 2.1 -3.62 -0.16 -1.75 3.07 -5.23 - - -1.36 0.63 - - -3.91 -
-3.03 -2.6 1.17 0.31 -1.03 -0.39 1.84 2.22 -0.39 -0.48 -2.09 -2.25 -2.04 -2.55 -2.48 -2.16
-1.04 -0.24 -0.08 -0.34 -0.48 -1.59 1.68 0.19 -0.87 -0.88 0.67 0.37 0.06 -0.13 -0.76 0.05
- - 2.24 - - - 3.45 -1.34 - - - - - - - -
- - 3.05 - 1.02 - 2.32 - - - - -0.57 - - - -
-7.12 0.2 -1.38 -0.81 -7.1 -6.24 0.81 0.21 - - - - 1.68 1.06 0.42 2.12
-3.01 - 1.35 0.1 -2.1 0.05 2.62 - - -1.61 -0.57 -1.68 - -1.41 1.66 -
-7.44 -5.75 -0.87 -0.29 -3.61 -5.5 1.05 1.51 -4.12 -5.06 -5.15 -6.72 1.52 0.77 0.6 1.75
- - 0.05 0.78 -4.75 -5.91 1.71 0.87 -4.43 -6.23 - - 0.74 0.92 0.79 1.46
- 1.03 -5.72 - - - 1.59 0.72 - - - - 1.15 1.25 0.56 1.68
-2.92 - -1.65 -1.81 -1.69 -1.99 0.62 0.68 - -3.29 -1.25 -3.36 2.35 0.42 1.07 1.26
- - 1.01 -2.95 -0.34 -0.99 2.55 1.74 -3.71 -2.06 -0.29 0.19 - -0.46 -1.39 -
- - -1.29 -2.25 - - -0.4 -1.15 - - - - 2.32 1.56 0.58 2.25
- -0.4 -3.17 -1.84 -0.72 -2.21 0.55 -0.37 - - - - -1.26 1.73 2.52 1.2
-4.84 -7.76 -1.44 -2.09 - -4.13 0.46 -0.72 -5.77 -3.41 -5.63 -3.76 2.14 1.93 1.39 1.18
-5.63 -5.35 -0.71 -1.75 - - 0.98 0.92 - - - - 1.94 1.43 0.66 1.62
- - 2.67 - - - 2.96 0.91 - - - - - - - -
-3.31 - -0.66 -0.75 -1.43 -2.8 -0.05 -2.07 -5.51 -1.36 -4.42 - 1.55 1.62 1.89 1.48
- 1.77 - - - - 2.2 1.31 - - - - 2.46 - - -
-7.66 - 1.98 0.39 -2.97 -3.55 3.36 -4.69 - - -3.04 -3.21 - - - -
- - 0.4 0.3 -2.61 - 2.41 1.32 - - - - -0.82 0.4 0.89 0.79
-3.28 -5.25 -0.2 0.43 -4.84 -7.33 1.51 0.79 - -6.66 -4.39 -5.73 1.25 1.08 0.35 1.68
- - -0.91 -1.54 -2.47 -2.19 0.72 -0.31 - - - - 1.38 1.62 1.82 1.6
- 0.03 -3.72 - - - 1.05 -0.82 - - - - 1.46 1.78 1.83 1.34
-0.91 -0.98 -0.4 -0.45 -0.18 -0.66 2.0 1.19 - - -1.25 -1.78 0.81 0.67 -2.12 0.48

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.