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Heatmap: Cluster_127 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
1.36 0.84 -0.28 -0.48 0.64 0.35 0.39 -0.63 -1.4 -1.86 -0.88 -0.23 -0.55 -0.39 0.28 -0.77
0.7 0.62 -0.09 -0.95 0.36 0.74 -0.05 -0.94 -1.36 -1.12 -0.93 -0.58 -0.01 0.06 -0.35 1.05
- - - - - 2.53 0.87 1.85 - - 2.26 - - - - -
-0.29 -1.53 -1.17 -1.44 -1.12 -0.16 -0.9 -1.18 -1.13 -1.85 -0.98 -1.73 1.45 1.39 1.29 1.22
0.7 -1.07 -0.18 -1.87 0.74 0.85 -0.37 -1.15 -1.47 -2.85 -0.2 -0.82 0.49 0.91 0.85 0.03
0.85 -1.39 0.28 -0.93 0.95 0.33 -1.13 -1.97 -2.28 -1.73 -1.26 -0.86 1.11 0.08 0.54 1.02
1.7 -4.08 -1.14 -1.0 1.16 1.0 -0.96 -4.91 - - -2.35 -0.88 -0.33 0.98 -2.16 1.69
0.74 0.17 -0.33 -1.08 -0.2 0.06 -0.12 -1.06 -1.8 -1.22 -0.58 -0.35 0.6 0.61 0.81 0.73
1.18 0.54 -0.27 -0.0 0.49 0.49 0.33 -0.27 -1.21 -1.31 -0.96 -0.43 -0.4 -0.11 0.03 -0.39
0.88 -1.1 -0.43 -1.0 -0.2 0.58 -0.72 -1.98 -2.57 -0.92 -1.89 -1.58 1.1 1.48 -0.25 1.11
0.0 -0.54 -1.3 -2.16 -0.8 -0.45 -1.18 -1.1 -2.63 -1.8 -2.11 -1.63 1.58 1.31 1.29 1.36
1.09 0.11 -0.05 -0.59 0.51 0.71 -0.89 -2.21 -0.82 -0.9 -0.26 0.1 -0.69 0.66 -0.56 0.54
1.11 0.02 -0.13 0.1 0.25 0.28 0.1 -0.94 -0.49 -0.69 -0.2 -0.07 -0.19 -0.32 0.1 -0.09
0.52 -0.59 -1.44 -2.31 -0.72 -0.77 -0.54 -1.58 -4.62 -3.25 -3.2 -2.46 1.34 1.55 1.57 1.16
1.34 -1.64 0.17 -0.98 0.81 0.79 -1.14 -2.02 -5.32 -2.68 -2.89 -1.42 0.83 0.28 0.9 0.85
0.51 -1.8 -0.56 - -2.45 1.24 -0.93 -3.71 - - -0.25 - 1.65 -0.77 1.3 1.79
-0.02 -0.63 -2.13 -1.22 -1.07 -1.61 -0.82 -1.12 -2.91 -4.31 -1.75 -2.29 1.52 1.87 1.35 1.09
2.0 0.15 -2.89 -2.42 0.61 1.14 -1.17 -1.86 -3.06 -4.41 -3.38 -2.9 0.84 0.39 -0.07 0.75
0.9 -0.95 -0.29 -0.9 0.96 1.11 -0.51 -0.9 -1.89 -1.41 0.38 -0.9 0.96 0.47 -0.57 -1.25
0.65 -0.29 -0.42 -0.75 -0.16 -0.19 -0.47 -0.76 -0.68 -0.86 -1.33 -0.78 0.77 0.86 1.03 0.56
0.67 -1.31 -0.58 -1.31 -0.2 -0.18 -1.01 -1.83 -3.05 -3.7 -1.14 -0.87 1.14 1.31 1.68 0.41
0.28 -1.86 -2.53 -4.35 -1.33 -1.14 -1.43 -1.51 -7.58 - - -2.5 1.52 1.62 1.5 1.9
1.55 0.19 0.03 -1.57 0.7 0.92 -0.6 -1.33 -3.74 -3.26 -3.23 -1.75 0.33 -0.0 0.68 0.64
0.94 -0.44 -0.32 -0.63 -0.18 0.29 -0.7 -1.82 -3.04 -2.11 -1.41 -1.44 1.13 0.84 1.16 0.66
2.31 -0.47 -0.22 -0.14 1.32 0.75 -0.37 -1.17 -7.51 - -0.34 -0.29 -1.3 -1.5 -1.39 -1.24
1.25 -0.1 -0.96 -0.61 0.23 0.85 -0.84 -2.08 -0.62 -1.98 -0.34 -0.77 0.44 0.46 0.74 0.09
0.76 -0.55 -0.09 -1.21 0.05 0.28 -0.97 -1.11 -1.98 -1.6 -0.88 -0.18 0.83 1.32 0.34 0.57
-2.69 -3.77 -4.8 -4.88 -2.71 -2.15 -3.66 -3.9 - -7.16 - -7.23 0.91 1.99 2.39 2.03
- - - - - 3.3 2.62 - - - - - - - - -
1.61 -0.36 - - 2.76 2.37 - - - - - - - -2.28 - -
1.11 -2.1 0.46 -1.8 0.32 1.01 -1.22 -1.46 -2.55 -2.5 -0.46 -0.98 0.86 -0.54 1.38 0.27
0.88 0.13 -0.22 -0.07 0.21 0.1 0.49 -0.39 -0.13 -0.19 -0.19 -0.19 -0.2 -0.44 -0.11 -0.35
1.56 -1.37 0.8 1.14 1.34 1.39 - - - - -1.42 - - -0.7 1.37 -
-0.53 - - - - - - 0.53 - - 0.18 - - - 3.12 2.02
1.38 0.64 -0.51 0.31 0.93 0.9 -0.11 -2.16 -0.84 -1.48 1.18 0.33 -2.93 -2.91 -2.84 -2.93
0.74 -1.29 -0.27 -2.58 0.94 0.81 -0.24 -0.51 - - -2.25 - 1.53 1.13 -0.01 0.52
1.21 0.08 -0.38 -0.81 0.58 0.71 -0.75 -1.87 -2.13 -1.9 -0.52 -0.34 0.5 0.51 -0.0 0.55
1.73 0.58 -3.7 -2.63 2.21 2.35 -3.96 -5.36 - - -4.62 -4.76 -3.38 -2.35 -0.38 -
1.26 -0.76 0.26 -0.41 0.88 0.9 -0.67 -2.22 -1.9 -1.31 -1.17 -0.91 0.91 0.46 -1.17 0.23
0.16 -0.96 -1.36 -1.72 -0.25 0.58 -1.02 -1.22 -2.14 -1.59 -0.12 -1.06 1.31 0.86 0.47 1.47
0.8 -0.03 -0.55 -1.24 -0.08 0.34 -0.55 -1.58 -1.59 -2.17 -0.37 -0.18 0.96 1.1 0.46 0.36
0.99 0.2 -0.17 -1.2 0.17 0.0 -0.33 -1.47 -1.11 -0.64 -0.08 -0.2 0.27 0.36 0.66 0.34
0.78 -0.37 -0.24 0.03 0.69 0.96 -0.41 -1.21 -0.36 -1.18 -0.17 -0.34 -0.07 0.31 -0.62 0.19
0.71 0.02 -0.76 -0.75 0.8 0.69 -0.29 -0.36 -2.51 -1.13 -0.42 -2.52 0.83 0.19 0.39 0.51
1.17 -0.95 0.32 -0.26 0.92 0.68 -2.14 -3.2 -3.49 -5.01 -1.98 -0.76 1.08 0.85 0.06 0.47
- - - - - 2.69 1.62 -0.44 - - 2.52 - - - - -
0.92 -0.93 -0.22 -0.8 0.29 0.25 -0.41 -0.08 -1.86 -2.26 0.17 -0.74 0.61 0.6 -0.68 1.11
1.81 - - - 2.39 2.59 -1.8 -2.21 - - -0.46 - - - - -
-0.11 -0.63 -1.32 -2.24 -0.51 -0.23 -1.38 -0.9 -1.66 -1.4 -1.82 -1.21 1.35 1.37 1.29 1.23
0.58 -0.83 -1.19 -2.34 -0.67 -0.14 -1.18 -1.87 -2.84 -4.95 -2.45 -1.5 1.46 1.85 1.06 0.91
0.37 -1.61 -0.46 -1.22 -0.03 -0.11 -1.03 -0.96 -2.03 -1.8 -1.35 -1.29 1.83 0.97 0.55 1.01
- - - - - - - - - - 4.0 - - - - -
-3.22 -7.43 -4.07 - -3.28 -3.0 - -4.48 - - -5.2 -6.31 2.29 2.73 0.41 1.42
1.55 0.73 -4.57 -2.64 0.91 2.09 0.54 - - -3.9 - -3.97 0.15 -0.95 - 0.92
0.61 -1.41 -0.31 -1.37 0.54 0.26 -0.57 -1.05 -2.6 -4.54 -1.22 -1.75 1.44 0.92 0.64 0.99
1.41 -0.71 -0.8 -0.88 0.71 1.35 -2.34 -1.06 -2.26 -4.16 - -2.62 -0.83 1.41 1.14 -0.19
-0.22 -0.86 -2.3 - 0.68 0.32 -3.39 -2.07 - - -3.6 - 1.31 1.37 0.9 2.07
-0.41 -3.89 -2.64 -1.14 -0.01 0.22 -2.23 -0.79 - -5.14 -5.1 -1.63 -0.9 -1.68 3.1 0.88
0.92 -5.95 -0.2 0.33 1.47 1.8 -4.53 -3.4 -4.3 -4.5 -4.47 -2.99 1.14 0.66 -0.47 -0.33
2.68 1.75 -9.48 -7.02 1.38 1.85 -9.09 -7.0 - -10.41 - - - -7.55 - -
0.57 -0.76 -0.12 -1.79 -0.06 0.22 -0.81 -0.45 -2.69 -1.49 -0.27 -0.77 1.14 1.3 0.48 0.38
2.38 1.52 - - 1.52 2.08 -6.79 -4.31 - - - -5.56 - - -0.91 -2.01
2.33 1.69 -2.95 -0.29 1.18 0.34 1.03 -2.79 - - - -2.39 - - - -0.16
0.89 -2.1 -1.71 -2.01 1.06 1.48 -0.12 -0.1 -2.44 -1.0 -0.53 -1.08 0.62 -0.1 -0.36 0.61
0.6 -0.53 -0.35 -1.46 -0.18 0.65 -0.91 -2.02 -1.7 -2.38 -1.23 -1.45 1.36 1.08 0.46 1.05
-1.99 - - - - -1.6 -2.83 -4.82 - - - - 1.76 1.36 2.54 1.8
3.01 -1.96 -1.72 -1.28 1.75 1.8 -6.09 - - - -3.18 -4.87 - - - -
0.41 -0.39 -0.36 -1.09 0.34 1.11 0.49 -1.25 -2.18 -2.12 -0.27 - 0.34 0.24 0.46 1.21
1.04 0.42 0.07 -0.72 0.3 0.38 0.09 -1.17 -1.49 -1.51 -0.27 -0.29 -0.03 0.18 0.32 0.25
- - - - - 4.0 - - - - - - - - - -
-0.02 -0.75 -1.09 -1.99 -0.86 -0.71 -0.77 -1.73 -2.09 -2.33 -1.7 -1.46 1.19 1.63 1.55 1.16
0.2 -0.95 -1.16 -1.96 -0.49 -0.55 -1.12 -1.14 -3.87 -4.39 -2.51 -1.89 1.59 1.8 0.81 1.34
0.64 -0.18 -0.54 -1.05 0.33 0.62 -0.42 -1.45 -1.85 -1.94 -0.15 -0.58 1.06 0.55 0.48 0.51
-0.1 -1.72 -1.05 -1.72 -0.09 -0.02 -2.81 -1.71 -2.9 -1.94 -2.08 -2.69 1.5 1.58 1.09 1.51
0.8 0.53 -0.1 0.39 0.59 0.91 -0.75 -1.13 -0.43 -1.46 0.31 -0.43 -0.32 -0.85 -1.07 0.29
-0.28 - -0.99 -1.47 -0.67 0.33 -2.15 -2.32 - - - -3.25 1.9 1.55 0.75 1.83
0.65 -0.13 -0.58 -1.24 -0.35 0.24 -0.37 -1.59 -1.78 -1.15 -0.7 -0.77 0.67 0.87 1.2 0.76
1.75 -0.18 0.22 0.4 0.96 1.05 -1.63 -2.85 0.1 -1.41 -1.96 -1.16 -0.82 -0.65 -0.75 -0.26
2.24 -0.62 -0.71 -2.38 2.01 0.84 -1.79 -2.54 - - -2.06 - 0.21 0.11 - 0.08
1.19 -0.1 -0.18 0.03 1.33 1.08 -1.02 -1.52 0.03 -0.4 0.28 -0.4 -1.12 -1.54 -2.74 -0.48
0.88 -0.01 -0.26 -0.93 0.01 -0.03 -0.09 -0.84 -0.87 -1.16 -0.79 -0.41 0.65 0.32 0.69 0.64
0.13 -0.94 -0.65 -2.91 0.7 -0.82 -2.59 -1.97 - - - - 1.14 1.34 1.65 1.64
0.25 -1.26 -0.26 -1.08 -1.38 0.18 -0.89 -1.92 -1.34 -2.87 -1.51 -1.62 0.73 1.17 1.91 0.93

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.