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Heatmap: Cluster_127 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
1000.13 697.16 320.64 279.07 605.53 495.71 510.24 251.82 147.39 107.14 210.61 332.03 265.04 295.71 472.24 227.14
2.84 2.67 1.64 0.9 2.23 2.9 1.68 0.91 0.68 0.8 0.92 1.17 1.73 1.81 1.36 3.6
0.0 0.0 0.0 0.0 0.0 0.22 0.07 0.13 0.0 0.0 0.18 0.0 0.0 0.0 0.0 0.0
2.32 0.98 1.26 1.04 1.3 2.54 1.52 1.25 1.29 0.78 1.43 0.85 7.74 7.43 6.94 6.6
2.24 0.66 1.22 0.38 2.3 2.48 1.07 0.62 0.5 0.19 1.2 0.78 1.94 2.59 2.5 1.41
2.18 0.46 1.47 0.64 2.35 1.53 0.55 0.31 0.25 0.37 0.51 0.67 2.62 1.29 1.76 2.46
7.1 0.13 1.0 1.09 4.89 4.36 1.12 0.07 0.0 0.0 0.43 1.19 1.74 4.31 0.49 7.08
116.34 78.57 55.36 33.08 60.68 72.71 64.25 33.5 19.98 29.96 46.62 54.54 105.87 106.24 122.08 115.41
165.0 106.34 60.66 72.96 102.83 102.84 91.97 60.42 31.57 29.37 37.54 54.17 55.18 67.89 74.33 55.7
0.97 0.25 0.39 0.26 0.46 0.79 0.32 0.13 0.09 0.28 0.14 0.18 1.13 1.48 0.44 1.14
76.71 52.75 31.09 17.06 43.94 56.15 33.69 35.78 12.37 21.96 17.69 24.71 228.01 189.43 186.74 195.88
1.81 0.92 0.83 0.57 1.22 1.39 0.46 0.18 0.48 0.46 0.71 0.92 0.53 1.35 0.58 1.24
630.21 296.24 267.35 313.51 347.81 353.28 312.1 151.72 207.41 180.45 253.7 278.11 255.1 232.89 311.62 273.57
15.11 6.99 3.86 2.11 6.38 6.16 7.22 3.52 0.43 1.11 1.14 1.9 26.65 30.7 31.23 23.52
5.08 0.65 2.27 1.02 3.52 3.47 0.91 0.49 0.05 0.31 0.27 0.75 3.57 2.44 3.75 3.62
1.32 0.27 0.63 0.0 0.17 2.2 0.49 0.07 0.0 0.0 0.78 0.0 2.92 0.55 2.3 3.22
2.4 1.56 0.55 1.04 1.15 0.79 1.37 1.12 0.32 0.12 0.72 0.49 6.95 8.86 6.17 5.17
34.38 9.55 1.16 1.61 13.11 19.02 3.82 2.37 1.04 0.4 0.83 1.16 15.44 11.27 8.18 14.48
2.1 0.58 0.92 0.6 2.2 2.44 0.79 0.6 0.31 0.42 1.47 0.61 2.19 1.57 0.76 0.47
216.77 112.64 103.29 82.17 123.46 121.36 99.61 81.37 86.32 75.91 55.06 80.42 234.84 249.81 281.56 203.4
22.63 5.7 9.47 5.71 12.33 12.54 7.06 3.99 1.71 1.1 6.44 7.74 31.3 35.1 45.31 18.85
6.78 1.53 0.97 0.27 2.21 2.52 2.07 1.95 0.03 0.0 0.0 0.98 15.99 17.15 15.79 20.82
7.88 3.08 2.74 0.91 4.38 5.1 1.78 1.07 0.2 0.28 0.29 0.8 3.38 2.69 4.32 4.19
74.98 28.86 31.26 25.2 34.46 47.74 24.07 11.09 4.74 9.07 14.67 14.36 85.82 70.21 87.15 61.97
152.05 22.18 26.46 27.88 76.53 51.6 23.82 13.68 0.17 0.0 24.31 25.17 12.46 10.87 11.69 13.0
4.21 1.66 0.91 1.17 2.08 3.2 0.99 0.42 1.15 0.45 1.41 1.04 2.4 2.44 2.97 1.89
1.01 0.41 0.56 0.26 0.62 0.72 0.31 0.28 0.15 0.2 0.32 0.53 1.06 1.49 0.76 0.89
1.25 0.59 0.29 0.27 1.23 1.81 0.64 0.54 0.0 0.06 0.0 0.05 15.13 32.0 42.05 32.89
0.0 0.0 0.0 0.0 0.0 0.15 0.1 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
1.3 0.33 0.0 0.0 2.9 2.21 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.09 0.0 0.0
0.7 0.07 0.44 0.09 0.4 0.65 0.14 0.12 0.05 0.06 0.23 0.16 0.58 0.22 0.84 0.39
545.98 325.18 255.98 284.12 344.53 317.94 417.82 226.6 272.56 261.6 260.11 260.93 259.84 218.93 276.59 233.92
1.31 0.17 0.78 0.98 1.13 1.17 0.0 0.0 0.0 0.0 0.17 0.0 0.0 0.27 1.15 0.0
0.75 0.0 0.0 0.0 0.0 0.0 0.0 1.57 0.0 0.0 1.23 0.0 0.0 0.0 9.44 4.41
144.56 86.14 38.89 68.52 105.35 103.7 51.34 12.42 31.03 19.84 125.62 69.53 7.26 7.39 7.76 7.25
0.73 0.18 0.36 0.07 0.84 0.77 0.37 0.31 0.0 0.0 0.09 0.0 1.27 0.96 0.44 0.63
4.99 2.29 1.67 1.23 3.23 3.53 1.28 0.59 0.49 0.58 1.51 1.71 3.07 3.09 2.16 3.17
4.61 2.09 0.11 0.22 6.45 7.1 0.09 0.03 0.0 0.0 0.06 0.05 0.13 0.27 1.07 0.0
3.8 0.94 1.91 1.2 2.93 2.98 1.0 0.34 0.43 0.64 0.71 0.84 2.99 2.19 0.71 1.87
7.86 3.62 2.74 2.14 5.92 10.5 3.48 3.01 1.6 2.33 6.48 3.37 17.44 12.75 9.75 19.49
3.84 2.17 1.51 0.94 2.09 2.8 1.51 0.74 0.74 0.49 1.71 1.96 4.3 4.74 3.03 2.83
302.28 174.89 135.31 66.23 170.68 152.03 120.73 54.9 70.22 97.52 144.06 132.21 182.53 194.63 240.01 191.86
4.08 1.84 2.01 2.43 3.84 4.63 1.79 1.03 1.86 1.05 2.11 1.88 2.26 2.95 1.55 2.71
0.89 0.55 0.32 0.32 0.95 0.87 0.44 0.42 0.1 0.25 0.41 0.09 0.96 0.62 0.71 0.77
2.58 0.59 1.42 0.95 2.17 1.84 0.26 0.12 0.1 0.04 0.29 0.68 2.43 2.07 1.19 1.59
0.0 0.0 0.0 0.0 0.0 2.84 1.35 0.32 0.0 0.0 2.53 0.0 0.0 0.0 0.0 0.0
3.1 0.86 1.41 0.94 2.0 1.95 1.23 1.55 0.45 0.34 1.84 0.98 2.5 2.49 1.02 3.54
0.68 0.0 0.0 0.0 1.02 1.18 0.06 0.04 0.0 0.0 0.14 0.0 0.0 0.0 0.0 0.0
15.78 11.02 6.81 3.6 11.95 14.5 6.55 9.16 5.4 6.47 4.84 7.39 43.64 44.09 41.81 39.93
4.35 1.63 1.27 0.57 1.83 2.63 1.28 0.79 0.41 0.09 0.53 1.03 8.0 10.49 6.07 5.46
2.0 0.51 1.12 0.66 1.51 1.43 0.75 0.79 0.38 0.44 0.6 0.63 5.49 3.02 2.25 3.1
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.03 0.0 0.0 0.0 0.0 0.0
0.46 0.02 0.25 0.0 0.43 0.53 0.0 0.19 0.0 0.0 0.11 0.05 20.67 28.05 5.61 11.36
5.77 3.27 0.08 0.32 3.72 8.39 2.88 0.0 0.0 0.13 0.0 0.13 2.19 1.02 0.0 3.73
2.86 0.71 1.51 0.73 2.74 2.25 1.26 0.91 0.31 0.08 0.81 0.56 5.11 3.55 2.93 3.74
11.78 2.71 2.54 2.41 7.26 11.29 0.88 2.12 0.93 0.25 0.0 0.72 2.48 11.76 9.75 3.87
1.28 0.82 0.3 0.0 2.38 1.85 0.14 0.35 0.0 0.0 0.12 0.0 3.67 3.83 2.78 6.23
3.58 0.32 0.77 2.16 4.73 5.54 1.02 2.76 0.0 0.14 0.14 1.55 2.55 1.49 40.79 8.79
4.53 0.04 2.09 3.03 6.66 8.35 0.1 0.23 0.12 0.11 0.11 0.3 5.3 3.78 1.74 1.91
896.71 469.18 0.2 1.08 362.8 505.33 0.26 1.09 0.0 0.1 0.0 0.0 0.0 0.75 0.0 0.0
2.11 0.83 1.3 0.41 1.36 1.64 0.81 1.03 0.22 0.5 1.17 0.83 3.12 3.49 1.97 1.84
9.0 4.97 0.0 0.0 4.97 7.32 0.02 0.09 0.0 0.0 0.0 0.04 0.0 0.0 0.92 0.43
1.11 0.71 0.03 0.18 0.5 0.28 0.45 0.03 0.0 0.0 0.0 0.04 0.0 0.0 0.0 0.2
4.0 0.5 0.66 0.54 4.5 6.02 1.98 2.0 0.4 1.08 1.49 1.02 3.31 2.01 1.68 3.28
2.35 1.08 1.22 0.57 1.37 2.45 0.83 0.38 0.48 0.3 0.66 0.57 3.99 3.28 2.14 3.22
0.13 0.0 0.0 0.0 0.0 0.17 0.07 0.02 0.0 0.0 0.0 0.0 1.7 1.29 2.93 1.76
9.27 0.3 0.35 0.47 3.86 4.0 0.02 0.0 0.0 0.0 0.13 0.04 0.0 0.0 0.0 0.0
1.17 0.67 0.69 0.41 1.11 1.9 1.24 0.37 0.2 0.2 0.73 0.0 1.11 1.04 1.21 2.04
91.53 59.5 46.82 26.93 54.57 57.95 47.41 19.75 15.87 15.61 36.95 36.46 43.59 50.23 55.47 52.91
0.0 0.0 0.0 0.0 0.0 0.29 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
45.77 27.51 21.8 11.68 25.55 28.19 27.12 13.95 10.83 9.18 14.24 16.77 105.64 143.41 135.03 103.42
5.58 2.51 2.17 1.25 3.45 3.31 2.23 2.21 0.33 0.23 0.85 1.3 14.56 16.91 8.48 12.28
2.58 1.46 1.14 0.8 2.08 2.55 1.24 0.6 0.46 0.43 1.49 1.11 3.46 2.43 2.31 2.36
15.48 5.04 7.99 5.04 15.6 16.37 2.36 5.06 2.22 4.32 3.93 2.57 46.77 49.69 35.35 47.35
32.0 26.52 17.08 23.98 27.64 34.46 10.88 8.38 13.66 6.66 22.74 13.65 14.67 10.16 8.77 22.52
0.41 0.0 0.25 0.18 0.32 0.63 0.11 0.1 0.0 0.0 0.0 0.05 1.87 1.47 0.84 1.78
30.44 17.74 12.96 8.22 15.25 22.93 14.94 6.45 5.65 8.75 11.9 11.33 30.79 35.49 44.43 32.72
15.51 4.08 5.39 6.1 9.01 9.54 1.49 0.64 4.94 1.74 1.19 2.07 2.62 2.95 2.75 3.85
0.31 0.04 0.04 0.01 0.26 0.12 0.02 0.01 0.0 0.0 0.02 0.0 0.08 0.07 0.0 0.07
51.02 20.84 19.81 22.79 56.21 47.27 11.07 7.78 22.81 16.9 27.16 17.01 10.31 7.71 3.35 16.08
35.82 19.23 16.24 10.16 19.6 19.04 18.2 10.87 10.58 8.7 11.21 14.61 30.42 24.19 31.32 30.27
0.33 0.16 0.19 0.04 0.49 0.17 0.05 0.08 0.0 0.0 0.0 0.0 0.66 0.76 0.95 0.94
2.24 0.78 1.57 0.89 0.73 2.13 1.01 0.5 0.74 0.26 0.66 0.61 3.12 4.23 7.05 3.58

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)