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Heatmap: Cluster_135 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.2 0.27 -0.48 -1.12 0.58 -1.71 0.14 -0.11 -0.96 -0.77 -0.49 -0.55 0.69 0.54 0.8 0.42
- - - - 0.01 - - - - - - - - - 3.35 2.26
1.83 -0.27 1.06 -0.08 2.07 -1.25 0.21 -0.29 -3.29 -2.86 -2.1 -0.92 -2.77 -3.48 -2.75 -0.69
-2.48 - - - -2.28 - - - - - - - 2.68 2.22 - 2.19
0.24 -1.31 -0.48 -3.14 1.28 0.4 -2.15 -6.16 -1.3 -0.93 -0.79 -0.57 -0.58 0.79 0.4 1.89
-2.28 - - -1.06 1.52 - - - - - -0.71 0.18 - 2.73 1.47 0.38
0.68 - -2.0 -2.17 3.1 -1.23 -1.19 -4.07 - - -4.11 -2.62 0.16 -0.96 1.21 -1.89
-0.23 -2.8 -0.36 -0.66 1.12 1.05 -1.9 -1.43 - - - -1.67 - 1.78 2.31 -
- - -1.91 - 0.21 0.06 - - - - - - 2.22 2.07 0.97 1.45
1.41 - -0.61 -0.27 1.53 - - 0.99 - - - -0.04 - 0.21 2.28 -
- - -2.89 - -2.76 -2.92 - - - - - - 1.91 1.83 1.0 2.65
0.08 -0.89 -2.94 - 0.36 0.48 -2.62 -2.42 - - - - 2.29 1.68 - 1.65
-0.73 -2.97 -1.97 -1.91 0.13 -2.13 -4.03 -3.96 -2.99 -3.4 -1.5 -1.51 1.97 1.98 -0.27 1.88
2.69 - - - 3.25 - - - - - - - - - - -
- - - 0.88 2.23 3.1 -0.14 - - - - - - - - -
2.13 0.86 -1.12 -0.05 2.25 1.16 -2.79 -4.56 -3.13 -4.07 -4.04 -4.01 -2.8 -3.89 -1.82 -1.33
- - - - 1.12 2.0 - - - - - - 1.91 1.4 - 1.78
0.52 0.23 0.69 -1.01 1.82 -2.68 -3.12 -0.53 -5.51 -3.56 -3.16 -1.5 0.13 -0.07 1.77 -0.41
- 0.02 - - 1.11 2.64 0.89 -1.36 - - - -0.46 - - 1.86 -
- -0.51 -0.82 - 1.62 - - - - - - - - 0.38 3.37 -
-0.29 -0.76 -0.83 -2.09 1.08 -2.04 - 0.3 - - -0.53 -1.44 -0.09 1.06 0.47 2.24
- - - 2.27 2.47 -0.68 - -1.74 - - - - - - 2.23 -
- - - - 2.85 3.14 - - - - - - - - - -
1.57 -0.36 0.98 - 1.95 -2.44 - -2.77 - - - - 0.07 1.09 - 1.54
1.93 0.61 -0.44 -1.13 1.17 -0.51 -1.56 -1.79 0.37 0.09 -2.27 -0.46 -0.39 -0.28 -1.63 -0.49
- - 2.02 - 2.09 2.05 1.82 - - - - - - - - -
3.08 - - - 2.91 - - - - - - - - - - -
-0.86 - 1.59 - 2.13 1.98 -0.66 - - - - - - - - 1.79
- - 0.53 0.77 1.81 2.31 0.66 0.39 -0.86 - - - - -1.67 - -0.7
- - - - 4.0 - - - - - - - - - - -
- - -0.08 1.26 2.04 1.89 - - - - 0.6 - - 1.73 - -
2.23 - -0.58 -0.83 2.37 -0.03 - -2.83 - -2.52 -0.48 0.41 - -1.35 -0.28 -1.38
0.47 - -0.49 -1.16 2.88 0.8 -1.17 1.19 - - -0.81 0.09 - - - -
- - - - 2.29 1.47 - - - - - - 1.81 0.71 - 1.69
- - 1.02 - 2.45 2.55 -1.66 -1.11 - - - - 0.91 - - -
- - - - 3.63 - - 1.84 - - - - - - - -
- - 1.51 -0.1 1.58 1.13 -0.29 0.11 - - - - - - 2.37 -
-0.39 -1.48 -0.33 -0.2 0.35 0.8 -0.89 -0.86 -0.21 -0.31 -0.78 -0.42 1.1 1.18 -0.33 -0.15
- - - - 1.29 1.72 - - - - - - - 0.98 3.05 -
- - -1.3 -0.97 1.83 1.99 - - 0.87 - - -0.73 - 1.1 1.58 -
- - - - -1.91 -3.4 -3.45 - - - - - 2.55 0.98 1.11 2.47
- - 1.81 - 2.93 2.28 - - - - - - - - - -
- - -1.34 -1.74 0.04 -1.37 - - - - -2.97 - 0.83 1.05 2.68 1.82
0.17 -1.18 - -0.24 2.72 1.71 - -2.25 0.01 - - - 1.33 - - -
- 1.0 -0.22 - 2.88 2.35 - -0.62 - - - - - - - -
0.89 0.61 - 0.27 1.23 - 1.27 -0.45 -0.84 1.2 1.62 - - - - -
-0.81 -2.6 -0.7 1.29 2.13 1.71 -0.3 - -1.37 - 1.34 - - - - -0.3
- 1.13 1.18 0.56 2.58 1.79 - -0.64 - - - - - - - -
0.13 -0.36 0.09 -0.3 1.07 -0.49 -0.5 -0.4 -0.82 -0.02 -0.89 0.31 0.29 0.09 -0.09 0.5
- - -4.32 -0.76 -0.66 0.62 -2.31 -2.54 - - - - 2.52 1.79 0.12 1.35
- - - 1.56 3.28 0.52 0.0 - - - -1.12 -1.24 - - - -
- - - -2.39 -1.2 - - -7.68 - - - - 2.16 1.85 1.02 2.4
1.29 -1.16 -0.97 -0.64 2.16 0.41 -3.23 -0.96 - - - - 1.36 0.26 - 0.82
- - - - 3.68 - 1.67 - - - - - - - - -
- - - - 3.59 1.98 - - - - - - - - - -
- - -8.27 -7.94 -6.56 -6.72 - -7.93 - - - - 3.35 2.06 -0.26 -0.4
2.62 - - - 3.3 - - - - - - - - - - -
- - - 2.3 3.24 - -1.97 - - - -0.49 -0.62 - - - -
- - - - -0.78 -0.91 - - - - - - 3.33 - 1.98 -0.12
- - - - 3.03 2.97 - - - - - - - - - -
1.89 1.67 - - 2.12 1.04 0.3 0.57 - - - - - - - -
2.53 -1.33 -0.67 - 2.25 0.3 - - - -0.01 - - - 1.14 - -
- - - - 0.74 -1.75 -1.38 -3.36 - - - - - - 3.76 -
- - - - 2.52 3.36 - - - - - - - - - -
0.63 0.01 -0.57 0.2 0.88 -0.82 0.17 -0.58 -0.07 0.01 -0.08 -0.47 -0.01 -0.55 -0.45 0.47
- - - 1.66 1.42 2.04 - - - - - - - - 2.6 -
1.47 - - - 1.86 2.74 -0.84 - - - 1.22 - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.