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Heatmap: Cluster_231 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-0.05 0.19 - - -0.68 0.17 - 0.23 - - 0.88 - 1.11 1.6 - 1.98
-0.42 1.03 -1.45 -1.07 -2.14 -1.94 -0.3 -0.27 -2.61 -3.32 -0.21 -0.48 1.36 0.75 0.08 1.63
-1.77 1.56 -1.99 - -1.27 - - -4.05 - - 0.26 -0.84 0.93 1.74 1.89 0.39
2.71 2.37 - - - - -0.3 1.79 - - - - - - - -
0.22 1.26 -0.97 -1.07 -0.17 -1.24 0.41 -0.57 -1.17 -1.81 0.76 -0.8 1.12 0.3 -2.82 0.68
0.78 1.81 -0.73 -1.6 -1.06 -0.21 -0.91 -2.39 -0.48 -1.98 0.13 0.12 0.09 0.09 0.08 0.51
1.05 1.53 -2.25 -1.89 0.9 1.07 1.06 0.47 -0.63 - 0.95 -0.87 - - - -
-0.01 -0.78 -5.88 -3.55 -5.74 -5.92 -0.67 -1.12 -5.31 - -1.28 -3.0 2.15 1.13 0.18 2.29
1.37 1.51 -3.95 -2.8 -3.86 -3.94 -3.39 -0.72 -5.14 -2.77 -1.57 1.81 0.65 -0.27 -0.09 1.11
0.67 1.89 - - -1.83 -1.01 - - -1.83 -1.35 0.45 1.04 -1.05 -0.34 0.92 1.41
0.07 0.75 -0.12 0.11 0.11 -0.18 0.79 0.7 -0.07 -0.38 0.41 0.13 -0.94 -1.07 -1.85 -0.94
0.8 1.15 -0.78 -0.38 0.01 -1.43 0.82 1.05 - - - - 0.53 0.06 -0.62 1.23
1.25 1.74 -2.84 -3.1 -2.02 -1.38 1.9 -0.9 -1.83 -1.11 -0.19 0.08 -0.36 -0.52 -1.59 -0.63
-4.72 1.07 -2.92 -2.27 -1.21 -0.02 -0.74 2.24 -0.54 -1.48 1.1 1.37 -2.01 -2.52 -1.03 -3.13
-0.52 -0.43 -1.54 -1.69 -1.11 -1.15 -0.18 0.19 -1.16 -0.74 0.08 -1.41 1.63 1.03 0.32 1.07
0.48 1.03 -0.49 -0.29 0.04 0.09 0.95 0.02 -1.73 -1.36 0.16 0.07 -0.02 -0.63 -0.73 -0.13
-0.27 0.4 -4.49 -5.16 -2.19 -3.53 -0.99 -0.55 -2.11 -1.54 -1.36 -0.93 1.47 1.13 1.3 1.76
0.66 0.05 -6.56 -5.23 -2.73 -2.96 -3.02 0.16 -6.0 -3.94 -4.32 -2.49 1.98 1.75 0.82 1.3
0.82 0.5 -1.23 -0.63 -0.68 -1.05 0.68 -0.11 -0.74 -0.95 -0.35 0.12 0.5 0.33 0.26 0.34
-2.66 3.41 - - - - - - - - 1.18 1.56 - - - -
-1.76 -0.86 -4.27 -5.22 -3.55 -3.19 -2.86 -0.78 -9.68 -8.03 -2.95 -2.41 2.13 2.15 0.44 1.88
1.41 0.44 -2.59 -3.52 -2.01 -0.97 0.23 0.03 -1.39 -1.31 -0.69 -1.26 1.03 0.34 -0.12 1.45
0.31 2.07 -1.26 -2.38 -0.77 -2.68 1.83 1.74 -4.72 -5.66 -0.31 -0.53 -2.39 -2.68 - -1.34
0.42 0.79 -0.72 -0.26 -0.23 0.1 0.65 0.02 0.01 -0.21 0.67 0.44 -0.53 -1.13 -1.84 -0.45
1.6 1.52 -0.96 -0.77 0.39 -1.07 1.75 0.56 -1.32 -1.62 -1.1 -1.38 -2.49 -3.05 -1.17 -4.49
0.75 1.05 -0.75 -1.18 -0.56 -0.0 0.07 0.78 -0.47 -1.95 -0.57 -0.62 0.28 -0.21 0.03 0.46
1.14 1.42 - -2.37 -3.57 -4.74 -1.37 -1.93 -0.96 -1.07 0.92 -0.97 0.53 0.64 1.36 0.26
-0.4 0.16 -2.68 -3.02 -2.02 -1.74 -0.83 -0.62 -1.35 -1.52 -0.9 -0.47 1.7 1.07 0.84 1.56
1.38 2.08 -1.64 -1.31 -0.51 -1.41 1.78 0.98 - -1.33 -0.13 -0.6 - - - -
0.26 2.3 -0.79 -0.8 0.0 -0.08 0.5 -1.86 -2.81 -4.27 0.91 1.22 -3.47 -2.98 -2.49 -1.83
0.12 0.49 -3.0 -3.25 -2.54 -0.9 -0.64 -0.93 -2.5 -2.87 -0.58 -0.46 1.57 1.32 0.4 1.54
1.0 2.37 -2.08 -1.67 -2.29 -0.75 -0.74 -3.11 -3.46 -2.96 1.0 1.02 -1.01 -1.93 -2.36 0.66
-0.06 0.33 -0.98 -0.55 -0.45 -0.89 0.31 0.18 -1.26 -1.4 -0.11 -0.56 0.76 0.63 -0.01 1.21
0.87 2.71 -2.12 -1.85 -1.38 -1.4 1.29 0.61 -6.05 -4.53 -0.71 0.11 -2.91 -1.81 -3.42 -3.14
1.35 0.81 -2.17 -2.38 -1.86 -1.4 -0.01 0.43 -0.65 -0.79 - - 1.34 -0.02 -1.27 1.65
0.55 1.03 0.15 -1.37 0.81 -0.36 0.11 1.12 -0.87 -1.39 -0.55 -2.47 -0.13 -0.96 -0.13 0.09
-2.67 -1.46 - - - -5.77 -1.84 -2.27 -3.15 -6.09 -5.05 -4.57 1.74 1.96 1.83 1.99
-0.77 0.15 -1.58 -0.7 -2.19 -1.31 -0.05 -0.14 -6.01 -3.63 -3.33 -4.43 1.07 0.63 2.26 1.13
0.77 1.52 -2.12 -1.72 -0.89 -1.49 0.18 -0.12 -1.32 -1.18 0.6 0.62 -0.01 0.12 -0.33 0.22
0.44 0.03 -3.43 -3.09 -2.57 -4.04 -0.56 -0.82 -4.43 -2.37 -1.75 -1.12 1.14 1.55 1.04 1.9
-6.5 - - -6.4 - - -7.4 -5.37 - - -6.07 - 1.87 1.55 1.52 2.69
1.1 0.89 -2.9 -1.54 -0.75 -1.65 1.07 0.24 -0.37 -1.54 0.8 -0.37 0.6 0.09 -1.01 -0.65
0.63 1.18 -4.54 -3.88 -2.23 -2.87 -1.06 -0.14 -2.38 -0.74 -0.26 -1.12 0.9 0.81 0.6 1.65
- 2.78 - - 0.66 - - - - - - 1.09 2.44 - - -
0.79 0.23 -4.23 -3.99 -3.03 -2.64 -0.44 0.3 -4.06 -3.1 -0.79 -0.3 1.5 1.34 0.26 1.38
-0.12 2.83 - - -0.2 0.63 - -1.99 - - - 1.22 1.58 - - -
-1.18 -0.8 -2.85 -3.2 -1.88 -1.95 -0.81 -1.37 -1.19 -1.26 -2.34 -1.97 1.45 1.83 1.7 1.26
0.78 -0.57 -2.3 -2.55 -4.4 -2.68 -1.53 -0.48 -4.15 -3.37 -1.73 -2.27 1.48 1.57 1.03 1.81
0.08 0.15 -0.76 -0.35 -0.34 -0.01 0.28 0.29 -0.62 -0.64 0.05 -0.67 0.75 0.34 -0.08 0.47
0.01 0.41 -2.25 -1.13 -0.81 -3.82 -1.42 -0.62 -1.31 -2.72 0.32 -1.09 1.27 1.12 -0.92 1.98
-2.52 -2.92 -3.38 -4.03 -3.72 -2.43 -3.03 -2.91 -5.16 -5.11 -3.36 -5.15 1.75 2.02 2.07 1.69
1.62 1.59 - -2.63 - -1.26 -0.89 -0.79 -1.66 -2.33 1.7 0.87 -0.3 -0.4 - 0.06
0.7 1.31 -0.86 -1.03 -0.31 -0.48 1.49 -1.57 -2.97 -3.77 -0.5 0.66 -0.05 -0.33 -0.36 0.23
0.24 0.17 -1.68 -1.75 -0.91 -1.03 -0.45 -1.18 -1.41 -0.94 -0.97 -1.01 1.12 1.29 0.85 1.35
1.53 2.14 - - - - -2.25 -4.23 0.0 -0.94 1.42 - - 0.83 1.31 -
0.31 1.03 -2.56 -2.34 -2.13 -1.22 0.23 0.5 -2.31 -2.1 0.01 -0.33 1.2 0.66 -0.54 1.21
0.72 0.4 -3.7 -3.22 -4.15 -2.91 -3.37 0.33 -6.31 - -1.57 -2.73 2.29 0.75 0.2 1.63
- 3.2 - - - - 2.57 -0.18 - - - - - - - -
1.01 1.18 0.05 -1.53 -1.14 -0.57 0.47 -0.86 -0.12 -1.23 -0.03 0.6 0.64 -1.45 0.03 -1.07
0.78 0.64 -0.45 -0.41 -0.53 -0.61 0.21 -0.16 -0.23 -0.63 0.07 0.5 -0.07 0.06 -0.32 0.12
- -0.1 - - - - - -1.07 - - - 0.25 - 2.44 - 3.0
1.2 2.4 -3.15 -2.43 0.01 -0.97 -1.21 -2.35 -1.16 -1.52 0.61 0.86 -1.17 -0.7 -1.19 -1.61
0.83 1.42 -2.06 -3.46 -2.09 -2.4 -0.12 0.27 -0.65 -0.4 -0.2 -0.79 0.17 0.68 0.89 0.31
-0.1 0.53 -1.07 -0.2 -2.15 -0.01 -0.33 -0.68 -4.64 -3.58 -0.69 -0.95 1.6 0.6 0.4 1.32
-0.74 0.98 - - - - -0.79 -1.88 - - -0.49 - - -0.99 3.26 0.85
1.17 2.18 -2.52 -3.18 -2.06 -2.05 -0.76 -1.53 -4.79 -4.67 -0.85 0.48 0.45 0.31 -0.57 1.15
0.4 1.34 -1.7 -1.66 -0.97 -0.68 0.71 -1.04 -1.06 -1.85 -0.07 0.19 0.66 0.42 -0.34 0.78
1.1 1.51 - -3.2 -2.04 -3.56 -0.93 0.11 -1.19 -0.29 -0.09 -0.52 0.33 0.97 0.04 0.87

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.